These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3645#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [CTCAACCTCGCCGCTCACGCTCGCCGCCGCCGCTTGCGTCGCGCTCGCCGGCCCTGCTCTTGTCGCTCTCGCCGCCGCCGCCGCCGCCGCTTTCGTCGCGCTCGCCGGCCGCACTCTCGTCACGCTCGCCGCCGCTGCTCTCGTCGCACTCGCCACCGCCGCCGCTTGCGTCGTGCTCGCCGGCCCCGCTCTCGTCGCTTACGTCGCGCTCACCGGCCGTGCTCTCTCACGCTCGACACCGCCGCCGCCGCTCGCATTGTGCTCAAGATGCTTGACGAGAAGCGCGAACGTGAGCTCACTCCCAGGAAGGATGATGCCAAAGAAATGCAAGAGTAGCCTTGGCTTCATCTAGGAAAGATGGTTGACAAACTGATCTGCAACAACTCTTGTATCTTTCTTGCCTAGTTTCCTATTCTTGCTTCTAGCCAACAAAGCTTGATAAACTTGTTTTCTCACTTCTTCGGTCATGTCTTTCCTTCCTTCGATGGTTTACTTCAACGGGAGCCACGACATGTTCTAGCAAAAGGAAGAAAATCAAGTTCATTGATAGTACAAATAACCATGGCATGTTCTAGCAAAATCTAATTGTATCAAAAAGCAAGTTGGCTTACCAGCAAGGTGTCGTACATAATCGAAATCGACTGCACC] [+] EMBL AK111071 [CTCAACCTCGCCGCTCACGCTCGCCGCCGCCGCTTGCGTCGCGCTCGCCGGCCCTGCTCTTGTCGCTCTCGCCGCCGCCGCCGCCGCCGCTTTCGTCGCGCTCGCCGGCCGCACTCTCGTCACGCTCGCCGCCGCTGCTCTCGTCGCACTCGCCACCGCCGCCGCTTGCGTCGTGCTCGCCGGCCCCGCTCTCGTCGCTTACGTCGCGCTCACCGGCCGTGCTCTCTCACGCTCGACACCGCCGCCGCCGCTCGCATTGTGCTCAAGATGCTTGACGAGAAGCGCGAACGTGAGCTCACTCCCAGGAAGGATGATGCCAAAGAAATGCAAGAGTAGCCTTGGCTTCATCTAGGAAAGATGGTTGACAAACTGATCTGCAACAACTCTTGTATCTTTCTTGCCTAGTTTCCTATTCTTGCTTCTAGCCAACAAAGCTTGATAAACTTGTTTTCTCACTTCTTCGGTCATGTCTTTCCTTCCTTCGATGGTTTACTTCAACGGGAGCCACGACATGTTCTAGCAAAAGGAAGAAAATCAAGTTCATTGATAGTACAAATAACCATGGCATGTTCTAGCAAAATCTAATTGTATCAAAAAGCAAGTTGGCTTACCAGCAAGGTGTCGTACATAATCGAAATCGACTGCACC] consensusID : consensus_3645#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 196 fasta sequence [GAAATGGTAAGATAACACAACTTAATAATCGCATTACAAGGATGTCTCTATTAATTGAGTGCGGAACCTAACTAGCTTCATTCTAAATGTTCAATGCAGCAAGAGTAGCCTTGGCTTCATCTAGGAAAGATGGTTGACAAACTGATCTGCAACAACTCTTGTATCTTTCTTGCCTAGTTTCCCATTCTTGCTTCTA] [+] EMBL D43136 [GAAATGGTAAGATAACACAACTTAATAATCGCATTACAAGGATGTCTCTATTAATTGAGTGCGGAACCTAACTAGCTTCATTCTAAATGTTCAATGCAGCAAGAGTAGCCTTGGCTTCATCTAGGAAAGATGGTTGACAAACTGATCTGCAACAACTCTTGTATCTTTCTTGCCTAGTTTCCCATTCTTGCTTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3645#0 CTCAACCTCGCCGCTCACGCTCGCCGCCGCCGCTTGCGTCGCGCTCGCCGGCCCTGCTCT 60 consensus_3645#1 ------------------------------------------------------------ consensus_3645#0 TGTCGCTCTCGCCGCCGCCGCCGCCGCCGCTTTCGTCGCGCTCGCCGGCCGCACTCTCGT 120 consensus_3645#1 ------------------------------------------------------------ consensus_3645#0 CACGCTCGCCGCCGCTGCTCTCGTCGCACTCGCCACCGCCGCCGCTTGCGTCGTGCTCGC 180 consensus_3645#1 ------------------------------------------------------------ consensus_3645#0 CGGCCCCGCTCTCGTCGCTTACGTCGCGCTCACCGGCCGTGCTCTCTCACGCTCGACACC 240 consensus_3645#1 ----------------------------------------GAAATGGTAAGAT-AACACA 19 * * * * * **** consensus_3645#0 GCCGCCGCCGCTCGCATTGTGCTCAAGATGCTTGACGAGAAGCGCGAACGTGAGCTCACT 300 consensus_3645#1 ACT--TAATAATCGCATTACA---AGGATGTCTC-TATTAATTGAGTGCGGAACCTAACT 73 * ******* * **** * ** * * ** * ** *** consensus_3645#0 CCCAGGAAGGATGATGCCAAAGAAATGCAAGAGTAGCCTTGGCTTCATCTAGGAAAGATG 360 consensus_3645#1 AGCTTCATTCTAAATGTTCAATGCA-GCAAGAGTAGCCTTGGCTTCATCTAGGAAAGATG 132 * * *** ** * ********************************** consensus_3645#0 GTTGACAAACTGATCTGCAACAACTCTTGTATCTTTCTTGCCTAGTTTCCTATTCTTGCT 420 consensus_3645#1 GTTGACAAACTGATCTGCAACAACTCTTGTATCTTTCTTGCCTAGTTTCCCATTCTTGCT 192 ************************************************** ********* consensus_3645#0 TCTAGCCAACAAAGCTTGATAAACTTGTTTTCTCACTTCTTCGGTCATGTCTTTCCTTCC 480 consensus_3645#1 TCTA-------------------------------------------------------- 196 **** consensus_3645#0 TTCGATGGTTTACTTCAACGGGAGCCACGACATGTTCTAGCAAAAGGAAGAAAATCAAGT 540 consensus_3645#1 ------------------------------------------------------------ consensus_3645#0 TCATTGATAGTACAAATAACCATGGCATGTTCTAGCAAAATCTAATTGTATCAAAAAGCA 600 consensus_3645#1 ------------------------------------------------------------ consensus_3645#0 AGTTGGCTTACCAGCAAGGTGTCGTACATAATCGAAATCGACTGCACC 648 consensus_3645#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||