These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3674#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [CGAGCTTCAGTTCAGCTCGCCATTGCTAAGCCTGAAAGCTTCCTTCGHAGCGCACTTVGGAGCTGGAAGATGAGGAGGTTTTCTCTACATGCCGTGAGATATCTCGTGCTGTGGATGCTGCTGCGGTGTGGCCGTGAGCTCGTTGCAGCGGTGCCTCCTGATGGCTGGTACGATTACACTGCATACACCGACTGCAGAGGGCAGCCGGAGCCGGCGCTGTACAACGGAGGGATTCTGAGGTTCGGCAACAGCGACGACCCGACCGGKCTACCGCACGACGGAGACCGGCGTCTTCTCGCCGGCGTTCGTGGTCTACAACCTCAACAAGACCACCATGTACACCTTCTCAAGCTGGGTCAAGCTGGAAGGCGCGTCCTCTGCTCTGATCACGGCGAGGCTTGCGCTGGACAACGCCGGCGCGCGGTGCATCGGCACGGTTCTCGCGAGGACGTCTKCTGGGCCTTCCTCAAGGGCGGCTTCGYCCTCGACTGGCCAACACAAMCCTCAGTTATWTTTTTTCAGAATGCTGACAAGACCCCT] [+] EMBL BE229586 [CGAGCTTCAGTTCAGCTCGCCATTGCTAAGCCTGAAAGCTTCCTTCGHAGCGCACTTVGGAGCTGGAAGATGAGGAGGTTTTCTCTACATGCCGTGAGATATCTCGTGCTGTGGATGCTGCTGCGGTGTGGCCGTGAGCTCGTTGCAGCGGTGCCTCCTGATGGCTGGTACGATTACACTGCATACACCGACTGCAGAGGGCAGCCGGAGCCGGCGCTGTACAACGGAGGGATTCTGAGGTTCGGCAACAGCGACGACCCGACCGGKCTACCGCACGACGGAGACCGGCGTCTTCTCGCCGGCGTTCGTGGTCTACAACCTCAACAAGACCACCATGTACACCTTCTCAAGCTGGGTCAAGCTGGAAGGCGCGTCCTCTGCTCTGATCACGGCGAGGCTTGCGCTGGACAACGCCGGCGCGCGGTGCATCGGCACGGTTCTCGCGAGGACGTCTKCTGGGCCTTCCTCAAGGGCGGCTTCGYCCTCGACTGGCCAACACAAMCCTCAGTTATWTTTTTTCAGAATGCTGACAAGACCCCT] consensusID : consensus_3674#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 251 fasta sequence [CGACTTTCAGTGCAGAGGGCAGCCGGAGCCGGCGCTGTACAACGGAGGGATTCTGAGGTTCGGCAACAGCGACGACCCGACCGGCTACCGCACGACGGAGACCGGCGTCTTCTCGNCGGCGTTCGTGGTCTACAACCTCAACAAGACCACCATGTACACCTTCTCAAGCTGGGTCAAGCTGGAAGGCGCGTCCTCTGCTCTGATCACGGCGAGGCTTGCGCTGGACAACGCCGGCGCGCGGTGCATCGGCA] [+] EMBL AU093482 [CGACTTTCAGTGCAGAGGGCAGCCGGAGCCGGCGCTGTACAACGGAGGGATTCTGAGGTTCGGCAACAGCGACGACCCGACCGGCTACCGCACGACGGAGACCGGCGTCTTCTCGNCGGCGTTCGTGGTCTACAACCTCAACAAGACCACCATGTACACCTTCTCAAGCTGGGTCAAGCTGGAAGGCGCGTCCTCTGCTCTGATCACGGCGAGGCTTGCGCTGGACAACGCCGGCGCGCGGTGCATCGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3674#0 CGAGCTTCAGTTCAGCTCGCCATTGCTAAGCCTGAAAGCTTCCTTCGHAGCGCACTTVGG 60 consensus_3674#1 ------------------------------------------------------------ consensus_3674#0 AGCTGGAAGATGAGGAGGTTTTCTCTACATGCCGTGAGATATCTCGTGCTGTGGATGCTG 120 consensus_3674#1 ------------------------------------------------------------ consensus_3674#0 CTGCGGTGTGGCCGTGAGCTCGTTGCAGCGGTGCCTCCTGATGGCTGGTACGATTACACT 180 consensus_3674#1 ------------------------------------------------------------ consensus_3674#0 GCATACACCGACTGCAGAGGGCAGCCGGAGCCGGCGCTGTACAACGGAGGGATTCTGAGG 240 consensus_3674#1 --CGACTTTCAGTGCAGAGGGCAGCCGGAGCCGGCGCTGTACAACGGAGGGATTCTGAGG 58 ** * ************************************************ consensus_3674#0 TTCGGCAACAGCGACGACCCGACCGGKCTACCGCACGACGGAGACCGGCGTCTTCTCGCC 300 consensus_3674#1 TTCGGCAACAGCGACGACCCGACCGG-CTACCGCACGACGGAGACCGGCGTCTTCTCGNC 117 ************************** ******************************* * consensus_3674#0 GGCGTTCGTGGTCTACAACCTCAACAAGACCACCATGTACACCTTCTCAAGCTGGGTCAA 360 consensus_3674#1 GGCGTTCGTGGTCTACAACCTCAACAAGACCACCATGTACACCTTCTCAAGCTGGGTCAA 177 ************************************************************ consensus_3674#0 GCTGGAAGGCGCGTCCTCTGCTCTGATCACGGCGAGGCTTGCGCTGGACAACGCCGGCGC 420 consensus_3674#1 GCTGGAAGGCGCGTCCTCTGCTCTGATCACGGCGAGGCTTGCGCTGGACAACGCCGGCGC 237 ************************************************************ consensus_3674#0 GCGGTGCATCGGCACGGTTCTCGCGAGGACGTCTKCTGGGCCTTCCTCAAGGGCGGCTTC 480 consensus_3674#1 GCGGTGCATCGGCA---------------------------------------------- 251 ************** consensus_3674#0 GYCCTCGACTGGCCAACACAAMCCTCAGTTATWTTTTTTCAGAATGCTGACAAGACCCCT 540 consensus_3674#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||