cluster # 3682

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Oryza sativa
cluster # 3682 cluster # 3682 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3682#0 length = 634 sequences # 1

consensus_3682#1 length = 167 sequences # 1

consensusID : consensus_3682#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [GAGACCCGAAATAAAAATAAATTAAAAAAAAATCTGCTTCAACGAGAGAACCCAGAAAAAAACCAGCAGAGAGAAGTCTCCAGATTCTAGGGTTGGGGAATCGCGGCGAGAGGAAGTAGCAGCGGCGGCGGCGGAGGGAGGGGAGGTGAACCAGCAGCCTGAGCAGGAGCGGCGGCGTCGGCGGCGGCGGATTCCAAGTTTTGTTGCAATGGGTTTCTTCAGGACCAGCTTCACATTAATGTTTGGAATGGGATGTGGTGTCTATGTAGCTCAGAATTATGACGTCCCAAATGTCAAGAAGCTATTCAACACGTACATGTTCCTAGCCAAGCATATTGAGGAAACATATCGTAAGCCAAAGAGAGACGACTGATAGATTGCAAAGTTTTTTCTTGCATCACCCTTGGATTGTGAAGTATATCTCTGACATGATACAGAAAATGTAATCTCTTCAGAAGTTTCATAGGAAGTTTCTATTTCTCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTTGCGGATAATTTACCGGATGTCTAGTTGAGCACTTCTTTTTTGTTTGATTGCCAATTGTAGGCAAATGGAAAGTTTATGCTAATTTTTTTCAAAT]

[+] EMBL AK103880             [GAGACCCGAAATAAAAATAAATTAAAAAAAAATCTGCTTCAACGAGAGAACCCAGAAAAAAACCAGCAGAGAGAAGTCTCCAGATTCTAGGGTTGGGGAATCGCGGCGAGAGGAAGTAGCAGCGGCGGCGGCGGAGGGAGGGGAGGTGAACCAGCAGCCTGAGCAGGAGCGGCGGCGTCGGCGGCGGCGGATTCCAAGTTTTGTTGCAATGGGTTTCTTCAGGACCAGCTTCACATTAATGTTTGGAATGGGATGTGGTGTCTATGTAGCTCAGAATTATGACGTCCCAAATGTCAAGAAGCTATTCAACACGTACATGTTCCTAGCCAAGCATATTGAGGAAACATATCGTAAGCCAAAGAGAGACGACTGATAGATTGCAAAGTTTTTTCTTGCATCACCCTTGGATTGTGAAGTATATCTCTGACATGATACAGAAAATGTAATCTCTTCAGAAGTTTCATAGGAAGTTTCTATTTCTCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTTGCGGATAATTTACCGGATGTCTAGTTGAGCACTTCTTTTTTGTTTGATTGCCAATTGTAGGCAAATGGAAAGTTTATGCTAATTTTTTTCAAAT]




>consensus_3682#0
GAGACCCGAAATAAAAATAAATTAAAAAAAAATCTGCTTCAACGAGAGAACCCAGAAAAA
AACCAGCAGAGAGAAGTCTCCAGATTCTAGGGTTGGGGAATCGCGGCGAGAGGAAGTAGC
AGCGGCGGCGGCGGAGGGAGGGGAGGTGAACCAGCAGCCTGAGCAGGAGCGGCGGCGTCG
GCGGCGGCGGATTCCAAGTTTTGTTGCAATGGGTTTCTTCAGGACCAGCTTCACATTAAT
GTTTGGAATGGGATGTGGTGTCTATGTAGCTCAGAATTATGACGTCCCAAATGTCAAGAA
GCTATTCAACACGTACATGTTCCTAGCCAAGCATATTGAGGAAACATATCGTAAGCCAAA
GAGAGACGACTGATAGATTGCAAAGTTTTTTCTTGCATCACCCTTGGATTGTGAAGTATA
TCTCTGACATGATACAGAAAATGTAATCTCTTCAGAAGTTTCATAGGAAGTTTCTATTTC
TCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTT
GCGGATAATTTACCGGATGTCTAGTTGAGCACTTCTTTTTTGTTTGATTGCCAATTGTAG
GCAAATGGAAAGTTTATGCTAATTTTTTTCAAAT

consensusID : consensus_3682#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 167
fasta sequence

                              [TTCATAGGAAGTTTCTATTTCTCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTTGCGGATAATTTACCGGATGTCTAGTTGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU093694             [TTCATAGGAAGTTTCTATTTCTCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTTGCGGATAATTTACCGGATGTCTAGTTGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_3682#1
TTCATAGGAAGTTTCTATTTCTCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGA
TTCTACCGATGTAACAGTTTTGCGGATAATTTACCGGATGTCTAGTTGAGCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3682#0      GAGACCCGAAATAAAAATAAATTAAAAAAAAATCTGCTTCAACGAGAGAACCCAGAAAAA 60
consensus_3682#1      ------------------------------------------------------------
                                                                                  

consensus_3682#0      AACCAGCAGAGAGAAGTCTCCAGATTCTAGGGTTGGGGAATCGCGGCGAGAGGAAGTAGC 120
consensus_3682#1      ------------------------------------------------------------
                                                                                  

consensus_3682#0      AGCGGCGGCGGCGGAGGGAGGGGAGGTGAACCAGCAGCCTGAGCAGGAGCGGCGGCGTCG 180
consensus_3682#1      ------------------------------------------------------------
                                                                                  

consensus_3682#0      GCGGCGGCGGATTCCAAGTTTTGTTGCAATGGGTTTCTTCAGGACCAGCTTCACATTAAT 240
consensus_3682#1      ------------------------------------------------------------
                                                                                  

consensus_3682#0      GTTTGGAATGGGATGTGGTGTCTATGTAGCTCAGAATTATGACGTCCCAAATGTCAAGAA 300
consensus_3682#1      ------------------------------------------------------------
                                                                                  

consensus_3682#0      GCTATTCAACACGTACATGTTCCTAGCCAAGCATATTGAGGAAACATATCGTAAGCCAAA 360
consensus_3682#1      ------------------------------------------------------------
                                                                                  

consensus_3682#0      GAGAGACGACTGATAGATTGCAAAGTTTTTTCTTGCATCACCCTTGGATTGTGAAGTATA 420
consensus_3682#1      ------------------------------------------------------------
                                                                                  

consensus_3682#0      TCTCTGACATGATACAGAAAATGTAATCTCTTCAGAAGTTTCATAGGAAGTTTCTATTTC 480
consensus_3682#1      ---------------------------------------TTCATAGGAAGTTTCTATTTC 21
                                                             *********************

consensus_3682#0      TCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTT 540
consensus_3682#1      TCGACAACTGTTGAACTATGATCTTGGTTAGCTGTGAGATTCTACCGATGTAACAGTTTT 81
                      ************************************************************

consensus_3682#0      GCGGATAATTTACCGGATGTCTAGTTGAGCACTTCTTTTTTGTTTGATTGCCAATTGTAG 600
consensus_3682#1      GCGGATAATTTACCGGATGTCTAGTTGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 141
                      *******************************               *     **    * 

consensus_3682#0      GCAAATGGAAAGTTTATGCTAATTTTTTTCAAAT 634
consensus_3682#1      AAAAAAAAAAAAAAAAAAAAAAAAAA-------- 167
                        ***   ***    *    **