cluster # 3693

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Oryza sativa
cluster # 3693 cluster # 3693 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3693#0 length = 713 sequences # 1

consensus_3693#1 length = 346 sequences # 1

consensusID : consensus_3693#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 713
fasta sequence

                              [AATCGCCATCAAAGGCAAAGCCACCGCCTCCGCCGCGGCCGCCAAGAGCAGCAGCCGCCTCCGCCGCCGCCACCGCCGCCCCGCGGTCGACGCAAGGGTAAGGGTAAGGGTAAGGGTAGGGCAGAGCGGACCGCGGCGGCGATGCTCGCTTGGAAGGAGAAGGTGGCGGACAGGCTCGCCCGCCTCCTCGCCGACTCCCCCGCCTCCCCCTCCTCCGCAGCCGCCACACCACCACCACAACCCGCCACCGCCGCCGCCGCCGCCGCCGCTGCCGTTGAGCCGCAGGCAACGCCTTTTCCAGTGGAGCATTTTACTTCCCCTAAGAAAGGATCATTATCTTCTTACGTGATGTCCCTTCTACCAACCTCAAATCCGGGACATGAAAGGACTTCACCGAGTTCACAGCATATGAAACCACTGCCTCCTGAATCGCTTCCTAAACGATGGAGGGGGAATGATTTCTTGTGGCATGATCCGCCCCTGGCATTAAGTGAGGAATCTGGATCTGAAAGTGAGAGAGACGAAAGGAATGGAAATTCTAATAACGAGCAGATCCTGCAGTCACACAGGCCCATCGATAACTCAAATGGAAATGAAGAAACATCAACATCAGACTGCACAGACTCTCTTTATTATTTAACTGAAAAGTCTACATTTATATCTCTAAAATTGTTTGGATTCTTTCAATCTTCTCTCCCTGGGACCTTAAAGGG]

[+] EMBL CB629873             [AATCGCCATCAAAGGCAAAGCCACCGCCTCCGCCGCGGCCGCCAAGAGCAGCAGCCGCCTCCGCCGCCGCCACCGCCGCCCCGCGGTCGACGCAAGGGTAAGGGTAAGGGTAAGGGTAGGGCAGAGCGGACCGCGGCGGCGATGCTCGCTTGGAAGGAGAAGGTGGCGGACAGGCTCGCCCGCCTCCTCGCCGACTCCCCCGCCTCCCCCTCCTCCGCAGCCGCCACACCACCACCACAACCCGCCACCGCCGCCGCCGCCGCCGCCGCTGCCGTTGAGCCGCAGGCAACGCCTTTTCCAGTGGAGCATTTTACTTCCCCTAAGAAAGGATCATTATCTTCTTACGTGATGTCCCTTCTACCAACCTCAAATCCGGGACATGAAAGGACTTCACCGAGTTCACAGCATATGAAACCACTGCCTCCTGAATCGCTTCCTAAACGATGGAGGGGGAATGATTTCTTGTGGCATGATCCGCCCCTGGCATTAAGTGAGGAATCTGGATCTGAAAGTGAGAGAGACGAAAGGAATGGAAATTCTAATAACGAGCAGATCCTGCAGTCACACAGGCCCATCGATAACTCAAATGGAAATGAAGAAACATCAACATCAGACTGCACAGACTCTCTTTATTATTTAACTGAAAAGTCTACATTTATATCTCTAAAATTGTTTGGATTCTTTCAATCTTCTCTCCCTGGGACCTTAAAGGG]




>consensus_3693#0
AATCGCCATCAAAGGCAAAGCCACCGCCTCCGCCGCGGCCGCCAAGAGCAGCAGCCGCCT
CCGCCGCCGCCACCGCCGCCCCGCGGTCGACGCAAGGGTAAGGGTAAGGGTAAGGGTAGG
GCAGAGCGGACCGCGGCGGCGATGCTCGCTTGGAAGGAGAAGGTGGCGGACAGGCTCGCC
CGCCTCCTCGCCGACTCCCCCGCCTCCCCCTCCTCCGCAGCCGCCACACCACCACCACAA
CCCGCCACCGCCGCCGCCGCCGCCGCCGCTGCCGTTGAGCCGCAGGCAACGCCTTTTCCA
GTGGAGCATTTTACTTCCCCTAAGAAAGGATCATTATCTTCTTACGTGATGTCCCTTCTA
CCAACCTCAAATCCGGGACATGAAAGGACTTCACCGAGTTCACAGCATATGAAACCACTG
CCTCCTGAATCGCTTCCTAAACGATGGAGGGGGAATGATTTCTTGTGGCATGATCCGCCC
CTGGCATTAAGTGAGGAATCTGGATCTGAAAGTGAGAGAGACGAAAGGAATGGAAATTCT
AATAACGAGCAGATCCTGCAGTCACACAGGCCCATCGATAACTCAAATGGAAATGAAGAA
ACATCAACATCAGACTGCACAGACTCTCTTTATTATTTAACTGAAAAGTCTACATTTATA
TCTCTAAAATTGTTTGGATTCTTTCAATCTTCTCTCCCTGGGACCTTAAAGGG

consensusID : consensus_3693#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [ATGCTTCCACCACGCAAAGCCACCGCCTCCGCCGCGGCCGCCAAGAGCAGCAGCCGCCTCCGCCGCCGCCACCGCCGCCGCGCGGTCGACGCAAGGGTAAGGGTAAGGGTAAGGGTAGGGCAGAGCGGACCGCGGCGGCGATGCTCGCTTGGAAGGAGAAGGAGGCGGACAGGCTCGCCCGCCTCCTCGCCGACTCCCCCGCCTCCACCTCCTCCGCAGCCGCCACACCAGAACCACAACTCGCCACCGCCGCCGCCGCCGCCGCCGCTGCCGGAGAGCCGCAGGGAACGCCTTTTCCAGTGGAGCATTTTACTTCCCCTAAGAAAGGATCATTATCTTCTGTACG]

[+] EMBL CB629875             [ATGCTTCCACCACGCAAAGCCACCGCCTCCGCCGCGGCCGCCAAGAGCAGCAGCCGCCTCCGCCGCCGCCACCGCCGCCGCGCGGTCGACGCAAGGGTAAGGGTAAGGGTAAGGGTAGGGCAGAGCGGACCGCGGCGGCGATGCTCGCTTGGAAGGAGAAGGAGGCGGACAGGCTCGCCCGCCTCCTCGCCGACTCCCCCGCCTCCACCTCCTCCGCAGCCGCCACACCAGAACCACAACTCGCCACCGCCGCCGCCGCCGCCGCCGCTGCCGGAGAGCCGCAGGGAACGCCTTTTCCAGTGGAGCATTTTACTTCCCCTAAGAAAGGATCATTATCTTCTGTACG]




>consensus_3693#1
ATGCTTCCACCACGCAAAGCCACCGCCTCCGCCGCGGCCGCCAAGAGCAGCAGCCGCCTC
CGCCGCCGCCACCGCCGCCGCGCGGTCGACGCAAGGGTAAGGGTAAGGGTAAGGGTAGGG
CAGAGCGGACCGCGGCGGCGATGCTCGCTTGGAAGGAGAAGGAGGCGGACAGGCTCGCCC
GCCTCCTCGCCGACTCCCCCGCCTCCACCTCCTCCGCAGCCGCCACACCAGAACCACAAC
TCGCCACCGCCGCCGCCGCCGCCGCCGCTGCCGGAGAGCCGCAGGGAACGCCTTTTCCAG
TGGAGCATTTTACTTCCCCTAAGAAAGGATCATTATCTTCTGTACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3693#0      -AATCGCCATCAAAGGCAAAGCCACCGCCTCCGCCGCGGCCGCCAAGAGCAGCAGCCGCC 59
consensus_3693#1      ATGCTTCCACCA--CGCAAAGCCACCGCCTCCGCCGCGGCCGCCAAGAGCAGCAGCCGCC 58
                            *** **   *********************************************

consensus_3693#0      TCCGCCGCCGCCACCGCCGCCCCGCGGTCGACGCAAGGGTAAGGGTAAGGGTAAGGGTAG 119
consensus_3693#1      TCCGCCGCCGCCACCGCCGCCGCGCGGTCGACGCAAGGGTAAGGGTAAGGGTAAGGGTAG 118
                      ********************* **************************************

consensus_3693#0      GGCAGAGCGGACCGCGGCGGCGATGCTCGCTTGGAAGGAGAAGGTGGCGGACAGGCTCGC 179
consensus_3693#1      GGCAGAGCGGACCGCGGCGGCGATGCTCGCTTGGAAGGAGAAGGAGGCGGACAGGCTCGC 178
                      ******************************************** ***************

consensus_3693#0      CCGCCTCCTCGCCGACTCCCCCGCCTCCCCCTCCTCCGCAGCCGCCACACCACCACCACA 239
consensus_3693#1      CCGCCTCCTCGCCGACTCCCCCGCCTCCACCTCCTCCGCAGCCGCCACACCAGAACCACA 238
                      **************************** ***********************  ******

consensus_3693#0      ACCCGCCACCGCCGCCGCCGCCGCCGCCGCTGCCGTTGAGCCGCAGGCAACGCCTTTTCC 299
consensus_3693#1      ACTCGCCACCGCCGCCGCCGCCGCCGCCGCTGCCGGAGAGCCGCAGGGAACGCCTTTTCC 298
                      ** ********************************  ********** ************

consensus_3693#0      AGTGGAGCATTTTACTTCCCCTAAGAAAGGATCATTATCTTCT-TACGTGATGTCCCTTC 358
consensus_3693#1      AGTGGAGCATTTTACTTCCCCTAAGAAAGGATCATTATCTTCTGTACG------------ 346
                      ******************************************* ****            

consensus_3693#0      TACCAACCTCAAATCCGGGACATGAAAGGACTTCACCGAGTTCACAGCATATGAAACCAC 418
consensus_3693#1      ------------------------------------------------------------
                                                                                  

consensus_3693#0      TGCCTCCTGAATCGCTTCCTAAACGATGGAGGGGGAATGATTTCTTGTGGCATGATCCGC 478
consensus_3693#1      ------------------------------------------------------------
                                                                                  

consensus_3693#0      CCCTGGCATTAAGTGAGGAATCTGGATCTGAAAGTGAGAGAGACGAAAGGAATGGAAATT 538
consensus_3693#1      ------------------------------------------------------------
                                                                                  

consensus_3693#0      CTAATAACGAGCAGATCCTGCAGTCACACAGGCCCATCGATAACTCAAATGGAAATGAAG 598
consensus_3693#1      ------------------------------------------------------------
                                                                                  

consensus_3693#0      AAACATCAACATCAGACTGCACAGACTCTCTTTATTATTTAACTGAAAAGTCTACATTTA 658
consensus_3693#1      ------------------------------------------------------------
                                                                                  

consensus_3693#0      TATCTCTAAAATTGTTTGGATTCTTTCAATCTTCTCTCCCTGGGACCTTAAAGGG 713
consensus_3693#1      -------------------------------------------------------