cluster # 3697

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3697 cluster # 3697 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3697#0 length = 284 sequences # 1

consensus_3697#1 length = 268 sequences # 1

consensusID : consensus_3697#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 284
fasta sequence

                              [GCGCCCTAAAGCCGAGCCACGCGTCGCGCACGCTGCGGAGATCGCCTCCTCCTCGCCGCCGCCGCCGGGGGGAATGCCGAGCACGGGGCGCGACGCGGAGGGGACCCGCGGCGACTTCCCCGACGGCTTCNTCTTCGGCGTCGCCACCTCCGCTTACCAGATTGAAGGGGCGAGACGGGAGGGAGGCAAAGGAGATAACATATGGGATGGTTTCACAGAAAACAAAGAACGTATCTTAGATGGAAGCAGTGGAGAAGTTGCAGATGATCCTTACCATCGATACA]

[+] EMBL CB630142             [GCGCCCTAAAGCCGAGCCACGCGTCGCGCACGCTGCGGAGATCGCCTCCTCCTCGCCGCCGCCGCCGGGGGGAATGCCGAGCACGGGGCGCGACGCGGAGGGGACCCGCGGCGACTTCCCCGACGGCTTCNTCTTCGGCGTCGCCACCTCCGCTTACCAGATTGAAGGGGCGAGACGGGAGGGAGGCAAAGGAGATAACATATGGGATGGTTTCACAGAAAACAAAGAACGTATCTTAGATGGAAGCAGTGGAGAAGTTGCAGATGATCCTTACCATCGATACA]




>consensus_3697#0
GCGCCCTAAAGCCGAGCCACGCGTCGCGCACGCTGCGGAGATCGCCTCCTCCTCGCCGCC
GCCGCCGGGGGGAATGCCGAGCACGGGGCGCGACGCGGAGGGGACCCGCGGCGACTTCCC
CGACGGCTTCNTCTTCGGCGTCGCCACCTCCGCTTACCAGATTGAAGGGGCGAGACGGGA
GGGAGGCAAAGGAGATAACATATGGGATGGTTTCACAGAAAACAAAGAACGTATCTTAGA
TGGAAGCAGTGGAGAAGTTGCAGATGATCCTTACCATCGATACA

consensusID : consensus_3697#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 268
fasta sequence

                              [GCGACTCACCTGCCGAGCCACGCGTCGCGCACGCTGCGGAGATCGCCTCCTCCTCGCCGCCGCCGCCGGGGGGAATGGGGAGCACGGGGCGCGACGGGAGGTGACCCGCGGCGACTTCCCCGACGGCTTCGTCTTCGGCGTCGCCACCTCCGCTTACCAGATTGAAGGGGCGAGACGGGAGGGAGGCAAAGGAGATAACATATGGGATGTTTTCACAGAAAACAAAGACGTATCTTAGATGGGAGCAGTTGAGAAGTTGCANTTGATC]

[+] EMBL OSS4135A             [GCGACTCACCTGCCGAGCCACGCGTCGCGCACGCTGCGGAGATCGCCTCCTCCTCGCCGCCGCCGCCGGGGGGAATGGGGAGCACGGGGCGCGACGGGAGGTGACCCGCGGCGACTTCCCCGACGGCTTCGTCTTCGGCGTCGCCACCTCCGCTTACCAGATTGAAGGGGCGAGACGGGAGGGAGGCAAAGGAGATAACATATGGGATGTTTTCACAGAAAACAAAGACGTATCTTAGATGGGAGCAGTTGAGAAGTTGCANTTGATC]




>consensus_3697#1
GCGACTCACCTGCCGAGCCACGCGTCGCGCACGCTGCGGAGATCGCCTCCTCCTCGCCGC
CGCCGCCGGGGGGAATGGGGAGCACGGGGCGCGACGGGAGGTGACCCGCGGCGACTTCCC
CGACGGCTTCGTCTTCGGCGTCGCCACCTCCGCTTACCAGATTGAAGGGGCGAGACGGGA
GGGAGGCAAAGGAGATAACATATGGGATGTTTTCACAGAAAACAAAGACGTATCTTAGAT
GGGAGCAGTTGAGAAGTTGCANTTGATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3697#0      GCGCCCTAAA-GCCGAGCCACGCGTCGCGCACGCTGCGGAGATCGCCTCCTCCTCGCCGC 59
consensus_3697#1      GCGACTCACCTGCCGAGCCACGCGTCGCGCACGCTGCGGAGATCGCCTCCTCCTCGCCGC 60
                      *** *  *   *************************************************

consensus_3697#0      CGCCGCCGGGGGGAATGCCGAGCACGGGGCGCGACGCGGAGGGGACCCGCGGCGACTTCC 119
consensus_3697#1      CGCCGCCGGGGGGAATGGGGAGCACGGGGCGCGACG-GGAGGTGACCCGCGGCGACTTCC 119
                      *****************  ***************** ***** *****************

consensus_3697#0      CCGACGGCTTCNTCTTCGGCGTCGCCACCTCCGCTTACCAGATTGAAGGGGCGAGACGGG 179
consensus_3697#1      CCGACGGCTTCGTCTTCGGCGTCGCCACCTCCGCTTACCAGATTGAAGGGGCGAGACGGG 179
                      *********** ************************************************

consensus_3697#0      AGGGAGGCAAAGGAGATAACATATGGGATGGTTTCACAGAAAACAAAGAACGTATCTTAG 239
consensus_3697#1      AGGGAGGCAAAGGAGATAACATATGGGATGTTTTCACAGAAAACAAAGA-CGTATCTTAG 238
                      ****************************** ****************** **********

consensus_3697#0      ATGGAAGCAGTGGAGAAGTTGCAGATGATCCTTACCATCGATACA 284
consensus_3697#1      ATGGGAGCAGTTGAGAAGTTGCANTTGATC--------------- 268
                      **** ****** ***********  *****