These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_371#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [CCTCGAGATTGGATCCCCCTTTTTGCTTGAATAATAAAGAAATGGTGGTCATTCATTCCCTCTACATTCTTGAGTTCAATTCTCTCTCTCGCTCAATCAATTCTATTCACAATACGTTATCGGCACTTTCCCTCTCCCAAGGGAGTTCGCGAAGTTTAAGAAGGAAGAACATCACTTTTTGATCTGCGGGAAAAGCCAATACAAAAACAACGGAAGGGACGATGCCTACCTTTCATTGGATCATGGATGCCGTTCTCGGCCTCCCTCGCCATCAGCGCGCACGCCAGCTTCGCTATCTTCTTCGTCTATCGATGAGGAGGACGCGTTGGGGATCCCTCGGAGGCAGGGCTAGGGTTGTGGCCGCCGCCACTACCCTCGCCGCCGGGTGACTGCAACTCCAGTTGAGGTTCCCCCGCCTG] [+] EMBL CB684629 [CCTCGAGATTGGATCCCCCTTTTTGCTTGAATAATAAAGAAATGGTGGTCATTCATTCCCTCTACATTCTTGAGTTCAATTCTCTCTCTCGCTCAATCAATTCTATTCACAATACGTTATCGGCACTTTCCCTCTCCCAAGGGAGTTCGCGAAGTTTAAGAAGGAAGAACATCACTTTTTGATCTGCGGGAAAAGCCAATACAAAAACAACGGAAGGGACGATGCCTACCTTTCATTGGATCATGGATGCCGTTCTCGGCCTCCCTCGCCATCAGCGCGCACGCCAGCTTCGCTATCTTCTTCGTCTATCGATGAGGAGGACGCGTTGGGGATCCCTCGGAGGCAGGGCTAGGGTTGTGGCCGCCGCCACTACCCTCGCCGCCGGGTGACTGCAACTCCAGTTGAGGTTCCCCCGCCTG] consensusID : consensus_371#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 84 fasta sequence [GAATTGATTGAGCGAGAGAGAGAATTGAACACAAGAATGTAGAGGGAATGAATGAGCAGATTTCTTTATTGATCAAAAAAAAAA] [+] EMBL AA750798 [GAATTGATTGAGCGAGAGAGAGAATTGAACACAAGAATGTAGAGGGAATGAATGAGCAGATTTCTTTATTGATCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_371#0 CCTCGAGATTGGATCCCCCTTTTTGCTTGAATAATAAAGAAATGGTGGTCATTCATTCCC 60 consensus_371#1 ------------------------------------------------------------ consensus_371#0 TCTACATTCTTGAGTTCAATTCTCTCTCTCGCTCAATCAATTCTATTCACAATACGTTAT 120 consensus_371#1 ------------------------------------------------------------ consensus_371#0 CGGCACTTTCCCTCTCCCAAGGGAGTTCGCGAAGTTTAAGAAGGAAGAACATCACTTTTT 180 consensus_371#1 ---------------------------------------------------GAATTGATT 9 * * ** consensus_371#0 GATCT-GCGGGAAAAGCCAATACAAAAACAACGGAAGGGACGATGCCTACCTTTCATTG- 238 consensus_371#1 GAGCGAGAGAGAGAATTGAACACAAGAATGTAGAGGGAATGAATGAGCAGATTTCTTTAT 69 ** * * * ** ** ** **** ** * * *** * **** ** consensus_371#0 -GATCATGGATGCCGTTCTCGGCCTCCCTCGCCATCAGCGCGCACGCCAGCTTCGCTATC 297 consensus_371#1 TGATCAAAAAAAAAA--------------------------------------------- 84 ***** * consensus_371#0 TTCTTCGTCTATCGATGAGGAGGACGCGTTGGGGATCCCTCGGAGGCAGGGCTAGGGTTG 357 consensus_371#1 ------------------------------------------------------------ consensus_371#0 TGGCCGCCGCCACTACCCTCGCCGCCGGGTGACTGCAACTCCAGTTGAGGTTCCCCCGCC 417 consensus_371#1 ------------------------------------------------------------ consensus_371#0 TG 419 consensus_371#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||