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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 373 cluster # 373       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_373#0 length = 401 sequences # 1  
consensus_373#1 length = 395 sequences # 1  

consensusID : consensus_373#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence
                              [TTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGGCNNTCCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATCGTCTTGATCATCGCCGGGGCGAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATGGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGAGCTCCACGTCGTCGTCCCCTCCGTCGTCGCATTACCTCCTCCGGGGTAATCGCGGCTTCCTGCAANCCCGCAACGTTCAAAACGTGGGGCCCACCGACNAATTNTTGGGGTAAGAACGTTGGCAACTTTCCCCGTGGAATTGGGGCAACGGGGAAATAACGGGGGGGGGGGGTCCCAC]

[+] EMBL C72343               [TTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGGCNNTCCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATCGTCTTGATCATCGCCGGGGCGAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATGGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGAGCTCCACGTCGTCGTCCCCTCCGTCGTCGCATTACCTCCTCCGGGGTAATCGCGGCTTCCTGCAANCCCGCAACGTTCAAAACGTGGGGCCCACCGACNAATTNTTGGGGTAAGAACGTTGGCAACTTTCCCCGTGGAATTGGGGCAACGGGGAAATAACGGGGGGGGGGGGTCCCAC]


>consensus_373#0 TTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGGCNNTCCCATTCCAGAACATC CTCTCGTGGGAGGGGTGGAATCGTCTTGATCATCGCCGGGGCGAGATCCGTCTCGACGTC CGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATGGAAATGGATTGGATTCA TCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGAGCTCCACGTCGTCGTCC CCTCCGTCGTCGCATTACCTCCTCCGGGGTAATCGCGGCTTCCTGCAANCCCGCAACGTT CAAAACGTGGGGCCCACCGACNAATTNTTGGGGTAAGAACGTTGGCAACTTTCCCCGTGG AATTGGGGCAACGGGGAAATAACGGGGGGGGGGGGTCCCAC



consensusID : consensus_373#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence
                              [CAGGGAAAAAGGAAGGGGTTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGCNTTNCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATNGTNTTGATCATCGCCGGGGCGAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATGGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGAGCTCCACGTCGTCGTCCCCTCCGTCGTCGCAGTCACCTCCTCCGGGGTCATCGCCGCCTNCTGCCAGCCCGCCACCGTNCACAACGTCGGGCCCCACCGACCAATTTCTCGGGCTCAGAACGTCGCCACTTCCCGTCGAATNGGGGCACCGGGAA]

[+] EMBL C71754               [CAGGGAAAAAGGAAGGGGTTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGCNTTNCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATNGTNTTGATCATCGCCGGGGCGAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATGGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGAGCTCCACGTCGTCGTCCCCTCCGTCGTCGCAGTCACCTCCTCCGGGGTCATCGCCGCCTNCTGCCAGCCCGCCACCGTNCACAACGTCGGGCCCCACCGACCAATTTCTCGGGCTCAGAACGTCGCCACTTCCCGTCGAATNGGGGCACCGGGAA]


>consensus_373#1 CAGGGAAAAAGGAAGGGGTTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGCNT TNCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATNGTNTTGATCATCGCCGGGGCG AGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATG GAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGA GCTCCACGTCGTCGTCCCCTCCGTCGTCGCAGTCACCTCCTCCGGGGTCATCGCCGCCTN CTGCCAGCCCGCCACCGTNCACAACGTCGGGCCCCACCGACCAATTTCTCGGGCTCAGAA CGTCGCCACTTCCCGTCGAATNGGGGCACCGGGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_373#0      ------------------TTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGGCN 42
consensus_373#1      CAGGGAAAAAGGAAGGGGTTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCG-CN 59
                                       *************************************** **

consensus_373#0      NTCCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATCGTCTTGATCATCGCCGGGGC 102
consensus_373#1      TTNCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATNGTNTTGATCATCGCCGGGGC 119
                      * ************************************ ** *****************

consensus_373#0      GAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGAT 162
consensus_373#1      GAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGAT 179
                     ************************************************************

consensus_373#0      GGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCG 222
consensus_373#1      GGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCG 239
                     ************************************************************

consensus_373#0      AGCTCCACGTCGTCGTCCCCTCCGTCGTCGCA-TTACCTCCTCCGGGGTAATCGCGGCTT 281
consensus_373#1      AGCTCCACGTCGTCGTCCCCTCCGTCGTCGCAGTCACCTCCTCCGGGGTCATCGCCGCCT 299
                     ******************************** * ************** ***** ** *

consensus_373#0      CCTGCAANCCCGCAAC-GTTCAAAACGTGGGGCCC-ACCGACNAATTNTTGGGG-TAAGA 338
consensus_373#1      NCTGCCAGCCCGCCACCGTNCACAACGTCGGGCCCCACCGACCAATTTCTCGGGCTCAGA 359
                      **** * ***** ** ** ** ***** ****** ****** ****  * *** * ***

consensus_373#0      ACGTTGGCAACTTTCCCCGTGGAATTGGGGCAACGGGGAAATAACGGGGGGGGGGGGTCC 398
consensus_373#1      ACGTCGCCA---CTTCCCGTCGAATNGGGGCACCGGGAA--------------------- 395
                     **** * **    * ***** **** ****** **** *                     

consensus_373#0      CAC 401
consensus_373#1      ---
                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)