These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [TTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGGCNNTCCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATCGTCTTGATCATCGCCGGGGCGAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATGGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGAGCTCCACGTCGTCGTCCCCTCCGTCGTCGCATTACCTCCTCCGGGGTAATCGCGGCTTCCTGCAANCCCGCAACGTTCAAAACGTGGGGCCCACCGACNAATTNTTGGGGTAAGAACGTTGGCAACTTTCCCCGTGGAATTGGGGCAACGGGGAAATAACGGGGGGGGGGGGTCCCAC] [+] EMBL C72343 [TTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGGCNNTCCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATCGTCTTGATCATCGCCGGGGCGAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATGGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGAGCTCCACGTCGTCGTCCCCTCCGTCGTCGCATTACCTCCTCCGGGGTAATCGCGGCTTCCTGCAANCCCGCAACGTTCAAAACGTGGGGCCCACCGACNAATTNTTGGGGTAAGAACGTTGGCAACTTTCCCCGTGGAATTGGGGCAACGGGGAAATAACGGGGGGGGGGGGTCCCAC] consensusID : consensus_373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [CAGGGAAAAAGGAAGGGGTTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGCNTTNCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATNGTNTTGATCATCGCCGGGGCGAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATGGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGAGCTCCACGTCGTCGTCCCCTCCGTCGTCGCAGTCACCTCCTCCGGGGTCATCGCCGCCTNCTGCCAGCCCGCCACCGTNCACAACGTCGGGCCCCACCGACCAATTTCTCGGGCTCAGAACGTCGCCACTTCCCGTCGAATNGGGGCACCGGGAA] [+] EMBL C71754 [CAGGGAAAAAGGAAGGGGTTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGCNTTNCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATNGTNTTGATCATCGCCGGGGCGAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGATGGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCGAGCTCCACGTCGTCGTCCCCTCCGTCGTCGCAGTCACCTCCTCCGGGGTCATCGCCGCCTNCTGCCAGCCCGCCACCGTNCACAACGTCGGGCCCCACCGACCAATTTCTCGGGCTCAGAACGTCGCCACTTCCCGTCGAATNGGGGCACCGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_373#0 ------------------TTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCGGCN 42 consensus_373#1 CAGGGAAAAAGGAAGGGGTTTATCGCGACGAGGAGCCGAGGAGGGGGAGGCGCGCCG-CN 59 *************************************** ** consensus_373#0 NTCCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATCGTCTTGATCATCGCCGGGGC 102 consensus_373#1 TTNCCATTCCAGAACATCCTCTCGTGGGAGGGGTGGAATNGTNTTGATCATCGCCGGGGC 119 * ************************************ ** ***************** consensus_373#0 GAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGAT 162 consensus_373#1 GAGATCCGTCTCGACGTCCGGCGGGAAATGGACGATTCCCCGCTAGATAATCTGTTTGAT 179 ************************************************************ consensus_373#0 GGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCG 222 consensus_373#1 GGAAATGGATTGGATTCATCGGCAGGCGCGGACAGCTCTAGCTCCACGGGATCACCGCCG 239 ************************************************************ consensus_373#0 AGCTCCACGTCGTCGTCCCCTCCGTCGTCGCA-TTACCTCCTCCGGGGTAATCGCGGCTT 281 consensus_373#1 AGCTCCACGTCGTCGTCCCCTCCGTCGTCGCAGTCACCTCCTCCGGGGTCATCGCCGCCT 299 ******************************** * ************** ***** ** * consensus_373#0 CCTGCAANCCCGCAAC-GTTCAAAACGTGGGGCCC-ACCGACNAATTNTTGGGG-TAAGA 338 consensus_373#1 NCTGCCAGCCCGCCACCGTNCACAACGTCGGGCCCCACCGACCAATTTCTCGGGCTCAGA 359 **** * ***** ** ** ** ***** ****** ****** **** * *** * *** consensus_373#0 ACGTTGGCAACTTTCCCCGTGGAATTGGGGCAACGGGGAAATAACGGGGGGGGGGGGTCC 398 consensus_373#1 ACGTCGCCA---CTTCCCGTCGAATNGGGGCACCGGGAA--------------------- 395 **** * ** * ***** **** ****** **** * consensus_373#0 CAC 401 consensus_373#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||