cluster # 3736

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Oryza sativa
cluster # 3736 cluster # 3736 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3736#0 length = 795 sequences # 1

consensus_3736#1 length = 723 sequences # 1

consensusID : consensus_3736#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 795
fasta sequence

                              [GTTACAGAGGGTTCTTATAAATACACCTTATTTTTAGTATCAAACAAGATCTTCAAGAATTAGTGGTTGCTCAGAAGCCAACAAATAGGCTCCGAGAGCATCCCAGTAGCAATCACCTAGCTAGTGTGTTCTACTATATTGGTTATCAACGACCTTTGCCGATGATTTATTTTGTTCTCCAAAGCTATGCCAGCACGATCAGGACGTTAGCTGCTGCTGGGGCGACTGTCGCTGCTTGGAATGGCAAGCAGCGTCTGGGGAAGGTTACTGACCTTTGTTGCCTCATCTGCACGCTTTGCCGGCTTCTGTATTTCAATACCATGATGATGAAGTTCAGCAGTAGCCTTCGGTGGGTTAACTTGCCTATCTTCGGAGTCTATTTTTCGTTTCTTCATGCTGGTAGAACTCCTGTTGCCATCCGATCCTGCACCGACGCTCATTTCATTAACTTTGTCGACACTTCTGCTACTCTGACTATTTCCATTGTTAACCACAGGATACATGGTATGGGTGCTTGTCATATTTTGCAGGGACTGTGCAGATTGTGGGGCGGCAGGGTCGCTGTCACGCAACTTGGCAGCAGCAGCCAGCCTTCTCTTCATCCTCTGGTCATTGCGGACCTGAATGGCATGATTGGTTTAAATGAGGTACTATAAAATAGGATAATTTGGAAATTTACATTACTGAATTGTACACTTGTTTTCCTTCACTCCATATGATTATGACGGTTAAAAATAAAGACATGGTTAAGCTAAAATGGCATTCACGCCTTAAGAGAAGATCTTTCACCTTCCT]

[+] EMBL CB631702             [GTTACAGAGGGTTCTTATAAATACACCTTATTTTTAGTATCAAACAAGATCTTCAAGAATTAGTGGTTGCTCAGAAGCCAACAAATAGGCTCCGAGAGCATCCCAGTAGCAATCACCTAGCTAGTGTGTTCTACTATATTGGTTATCAACGACCTTTGCCGATGATTTATTTTGTTCTCCAAAGCTATGCCAGCACGATCAGGACGTTAGCTGCTGCTGGGGCGACTGTCGCTGCTTGGAATGGCAAGCAGCGTCTGGGGAAGGTTACTGACCTTTGTTGCCTCATCTGCACGCTTTGCCGGCTTCTGTATTTCAATACCATGATGATGAAGTTCAGCAGTAGCCTTCGGTGGGTTAACTTGCCTATCTTCGGAGTCTATTTTTCGTTTCTTCATGCTGGTAGAACTCCTGTTGCCATCCGATCCTGCACCGACGCTCATTTCATTAACTTTGTCGACACTTCTGCTACTCTGACTATTTCCATTGTTAACCACAGGATACATGGTATGGGTGCTTGTCATATTTTGCAGGGACTGTGCAGATTGTGGGGCGGCAGGGTCGCTGTCACGCAACTTGGCAGCAGCAGCCAGCCTTCTCTTCATCCTCTGGTCATTGCGGACCTGAATGGCATGATTGGTTTAAATGAGGTACTATAAAATAGGATAATTTGGAAATTTACATTACTGAATTGTACACTTGTTTTCCTTCACTCCATATGATTATGACGGTTAAAAATAAAGACATGGTTAAGCTAAAATGGCATTCACGCCTTAAGAGAAGATCTTTCACCTTCCT]




>consensus_3736#0
GTTACAGAGGGTTCTTATAAATACACCTTATTTTTAGTATCAAACAAGATCTTCAAGAAT
TAGTGGTTGCTCAGAAGCCAACAAATAGGCTCCGAGAGCATCCCAGTAGCAATCACCTAG
CTAGTGTGTTCTACTATATTGGTTATCAACGACCTTTGCCGATGATTTATTTTGTTCTCC
AAAGCTATGCCAGCACGATCAGGACGTTAGCTGCTGCTGGGGCGACTGTCGCTGCTTGGA
ATGGCAAGCAGCGTCTGGGGAAGGTTACTGACCTTTGTTGCCTCATCTGCACGCTTTGCC
GGCTTCTGTATTTCAATACCATGATGATGAAGTTCAGCAGTAGCCTTCGGTGGGTTAACT
TGCCTATCTTCGGAGTCTATTTTTCGTTTCTTCATGCTGGTAGAACTCCTGTTGCCATCC
GATCCTGCACCGACGCTCATTTCATTAACTTTGTCGACACTTCTGCTACTCTGACTATTT
CCATTGTTAACCACAGGATACATGGTATGGGTGCTTGTCATATTTTGCAGGGACTGTGCA
GATTGTGGGGCGGCAGGGTCGCTGTCACGCAACTTGGCAGCAGCAGCCAGCCTTCTCTTC
ATCCTCTGGTCATTGCGGACCTGAATGGCATGATTGGTTTAAATGAGGTACTATAAAATA
GGATAATTTGGAAATTTACATTACTGAATTGTACACTTGTTTTCCTTCACTCCATATGAT
TATGACGGTTAAAAATAAAGACATGGTTAAGCTAAAATGGCATTCACGCCTTAAGAGAAG
ATCTTTCACCTTCCT

consensusID : consensus_3736#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 723
fasta sequence

                              [TATAAATACACCTTATCCTTAAAAGTCAACAAGATCTTCAAGAATTAGTGGTTGCTCAGAAGCCAACAAATAGGCTCCGAGAGCATCCCCCTAACAATCACCTAGCTAGTGTGTTCTACTATATTGGTTATCAACGACCTTTGCCGATGATTTATTTTGTTCTCCAAAGCTATGCCAGCACGATCAGGACGTTAGCTGCTGCTGGGGCGACTGTCGCTGCTTGGAATGGCAAGCAGCGTCTGGGGAAGGTTACTGACCTTTGTTGCCTCATCTGCACGCTTTGCCGGCTTCTGTATTTCAATACCATGATGATGAAGTTCAGCAGTAGCCTTCGGTGGGTTAACTTGCCTATCTTCAGAGTCTATTTTTCGTTTCTTCATGCTGGTAGAACTCCTGTTGCCATCCGATCCTGCACCGACGCTCATTTCATTAACTTTGTCGACACTTCTGCTACTCTGACTATTTCCATTGTTAACCACAGGATACATGGTATGGGTGCTTGTCATATTTTGCAGGGACTGTGCAGATTGTGGGGCGGCAGGGTCGCTGTCACGCAACTTGGCAGCAGCAGCCAGCCTTCTCCTCTTCATCCTCTGGTCATTGCGGACCTTCCTCTGCCTATATAATAAATTCCTTCGCTCCTTAGATCTAGAAATGGCATCTCGAATTCCAACTTTATCCATGTCGCCATGTGGCCATAAGTTAGCAAGCTCTAGATACAAC]

[+] EMBL CB673737             [TATAAATACACCTTATCCTTAAAAGTCAACAAGATCTTCAAGAATTAGTGGTTGCTCAGAAGCCAACAAATAGGCTCCGAGAGCATCCCCCTAACAATCACCTAGCTAGTGTGTTCTACTATATTGGTTATCAACGACCTTTGCCGATGATTTATTTTGTTCTCCAAAGCTATGCCAGCACGATCAGGACGTTAGCTGCTGCTGGGGCGACTGTCGCTGCTTGGAATGGCAAGCAGCGTCTGGGGAAGGTTACTGACCTTTGTTGCCTCATCTGCACGCTTTGCCGGCTTCTGTATTTCAATACCATGATGATGAAGTTCAGCAGTAGCCTTCGGTGGGTTAACTTGCCTATCTTCAGAGTCTATTTTTCGTTTCTTCATGCTGGTAGAACTCCTGTTGCCATCCGATCCTGCACCGACGCTCATTTCATTAACTTTGTCGACACTTCTGCTACTCTGACTATTTCCATTGTTAACCACAGGATACATGGTATGGGTGCTTGTCATATTTTGCAGGGACTGTGCAGATTGTGGGGCGGCAGGGTCGCTGTCACGCAACTTGGCAGCAGCAGCCAGCCTTCTCCTCTTCATCCTCTGGTCATTGCGGACCTTCCTCTGCCTATATAATAAATTCCTTCGCTCCTTAGATCTAGAAATGGCATCTCGAATTCCAACTTTATCCATGTCGCCATGTGGCCATAAGTTAGCAAGCTCTAGATACAAC]




>consensus_3736#1
TATAAATACACCTTATCCTTAAAAGTCAACAAGATCTTCAAGAATTAGTGGTTGCTCAGA
AGCCAACAAATAGGCTCCGAGAGCATCCCCCTAACAATCACCTAGCTAGTGTGTTCTACT
ATATTGGTTATCAACGACCTTTGCCGATGATTTATTTTGTTCTCCAAAGCTATGCCAGCA
CGATCAGGACGTTAGCTGCTGCTGGGGCGACTGTCGCTGCTTGGAATGGCAAGCAGCGTC
TGGGGAAGGTTACTGACCTTTGTTGCCTCATCTGCACGCTTTGCCGGCTTCTGTATTTCA
ATACCATGATGATGAAGTTCAGCAGTAGCCTTCGGTGGGTTAACTTGCCTATCTTCAGAG
TCTATTTTTCGTTTCTTCATGCTGGTAGAACTCCTGTTGCCATCCGATCCTGCACCGACG
CTCATTTCATTAACTTTGTCGACACTTCTGCTACTCTGACTATTTCCATTGTTAACCACA
GGATACATGGTATGGGTGCTTGTCATATTTTGCAGGGACTGTGCAGATTGTGGGGCGGCA
GGGTCGCTGTCACGCAACTTGGCAGCAGCAGCCAGCCTTCTCCTCTTCATCCTCTGGTCA
TTGCGGACCTTCCTCTGCCTATATAATAAATTCCTTCGCTCCTTAGATCTAGAAATGGCA
TCTCGAATTCCAACTTTATCCATGTCGCCATGTGGCCATAAGTTAGCAAGCTCTAGATAC
AAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3736#0      GTTACAGAGGGTTCTTATAAATACACCTTATTTTTAGTATCAAACAAGATCTTCAAGAAT 60
consensus_3736#1      ---------------TATAAATACACCTTATCCTTAAAAGTCAACAAGATCTTCAAGAAT 45
                                     ****************  ***  *   ******************

consensus_3736#0      TAGTGGTTGCTCAGAAGCCAACAAATAGGCTCCGAGAGCATCCCAGTAGCAATCACCTAG 120
consensus_3736#1      TAGTGGTTGCTCAGAAGCCAACAAATAGGCTCCGAGAGCATCCCCCTAACAATCACCTAG 105
                      ********************************************  ** ***********

consensus_3736#0      CTAGTGTGTTCTACTATATTGGTTATCAACGACCTTTGCCGATGATTTATTTTGTTCTCC 180
consensus_3736#1      CTAGTGTGTTCTACTATATTGGTTATCAACGACCTTTGCCGATGATTTATTTTGTTCTCC 165
                      ************************************************************

consensus_3736#0      AAAGCTATGCCAGCACGATCAGGACGTTAGCTGCTGCTGGGGCGACTGTCGCTGCTTGGA 240
consensus_3736#1      AAAGCTATGCCAGCACGATCAGGACGTTAGCTGCTGCTGGGGCGACTGTCGCTGCTTGGA 225
                      ************************************************************

consensus_3736#0      ATGGCAAGCAGCGTCTGGGGAAGGTTACTGACCTTTGTTGCCTCATCTGCACGCTTTGCC 300
consensus_3736#1      ATGGCAAGCAGCGTCTGGGGAAGGTTACTGACCTTTGTTGCCTCATCTGCACGCTTTGCC 285
                      ************************************************************

consensus_3736#0      GGCTTCTGTATTTCAATACCATGATGATGAAGTTCAGCAGTAGCCTTCGGTGGGTTAACT 360
consensus_3736#1      GGCTTCTGTATTTCAATACCATGATGATGAAGTTCAGCAGTAGCCTTCGGTGGGTTAACT 345
                      ************************************************************

consensus_3736#0      TGCCTATCTTCGGAGTCTATTTTTCGTTTCTTCATGCTGGTAGAACTCCTGTTGCCATCC 420
consensus_3736#1      TGCCTATCTTCAGAGTCTATTTTTCGTTTCTTCATGCTGGTAGAACTCCTGTTGCCATCC 405
                      *********** ************************************************

consensus_3736#0      GATCCTGCACCGACGCTCATTTCATTAACTTTGTCGACACTTCTGCTACTCTGACTATTT 480
consensus_3736#1      GATCCTGCACCGACGCTCATTTCATTAACTTTGTCGACACTTCTGCTACTCTGACTATTT 465
                      ************************************************************

consensus_3736#0      CCATTGTTAACCACAGGATACATGGTATGGGTGCTTGTCATATTTTGCAGGGACTGTGCA 540
consensus_3736#1      CCATTGTTAACCACAGGATACATGGTATGGGTGCTTGTCATATTTTGCAGGGACTGTGCA 525
                      ************************************************************

consensus_3736#0      GATTGTGGGGCGGCAGGGTCGCTGTCACGCAACTTGGCAGCAGCAGCCAGCCTTCTC--- 597
consensus_3736#1      GATTGTGGGGCGGCAGGGTCGCTGTCACGCAACTTGGCAGCAGCAGCCAGCCTTCTCCTC 585
                      *********************************************************   

consensus_3736#0      TTCATCCTCTGGTCATTGCGGACCTGAATGGCATGATTGGTTTAAATGAGGTACTATAAA 657
consensus_3736#1      TTCATCCTCTGGTCATTGCGGACCT--------TCCTCTGCCTATATAATAAATTCCTTC 637
                      *************************        *  *  *  ** ** *   * *     

consensus_3736#0      ATAGGATAATTTGGAAATTTACATTACTGAATTGTACACTTGTTTTCCTTCACTCCATAT 717
consensus_3736#1      GCTCCTTAGATCTAGAAATGGCATC-TCGAATTCCA-ACTT--TATCCATGTCGCCATGT 693
                            **  *    ** *  ***    *****  * ****  * *** *  * **** *

consensus_3736#0      GATTATGACGGTTAAAAATAAAGACATGGTTAAGCTAAAATGGCATTCACGCCTTAAGAG 777
consensus_3736#1      GGCCATAAGTTAGCAAGCTCTAGATACAAC------------------------------ 723
                      *   ** *      **  *  *** *                                  

consensus_3736#0      AAGATCTTTCACCTTCCT 795
consensus_3736#1      ------------------