These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3739#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2543 fasta sequence [TTCTACCAAACCAAATCAAATTCTCGCTTCTTCTTGGACGCCGGGAACACCAAACCAACGAACAAACGGCGAATCCAAGTTTCGATTCGATTCGGTTCGGTTCCAACTCCAATCCGCGGCGCCGGCGGCAACAATGGCGGCGCTCCACGCACTCCAGCGATCTCAGTGGAGAATGAGGACTGAGGAGTAGTGATCTCGAATCGTGCAGAGCAGGGCTCCGCCTCCAGGGCAGAGGCATGTCTCTCGCCTGCGGGCTCCCGCTGCTGGAATGCGTCTACTGCCTGGGATGCGCGCGGTGGGCGTGGAAGCGGTGCCTCCACTCCGGCGACCGCGACAGCGCCACCTGGGGCCTCGCCTCCGCCGATGACTTCGCCCCCGTCCCGCGCCTCTGCCGCCTCATCATGGCCAACTACGACCACCACCCCTGCCACCCCCTCGACGCCCGCTGCGTCGTCCGCCGCCGCACCTACGCCGACACCCGCGGCCGCGTCACCCCCTACCTCCTCTACCTCGACCACCCCAACTCCGACATCGTCCTCGCCCTCCGCGGCCTCAACCTCGCCAGGGAGACCGACTACGCCCTCCTCCTCGACAACCGCCTCGGCAAGCGCCGCTTCCATGGCGGCTACGTCCACAACGGCCTCCTCCGCGCCGCCGCCTGGGTTCTCGACGCCGAGTGCGACCTCCTCCGGGACCTCCTCGCCGACCACCCCGACTACACCCTCACCTTCACTGGCCACTCCCTCGGCGCCGGCATCGCCGCCATGCTCACCGTCGTCGTCCTCCTCAACCTCGACAAGCTCGGCACCAATCTCCACAGGAGCCGCATCAGGTGCTACGCCATGGCGCCTGCCAGATGTATGTCGCTCAATCTGGCTATCAGATATGCCGACGTTATCAACTCTGTTGTCCTGCAAGTGAGCCCAGCGTTGTTCCCCCTTTTCAATTCCTGCTATACTTGCTTATTCCTCCTCACCATTCCTACCACATCACACTTGATCTGCATTCTTCATCTTCTGTCTCAACAAAATAATTATAGCTCCTTATTGACAGGATGATTTCTTGCCTCGGACAGCCACTCCTTTAGAAGACATTTTCAAGTCAATCCTATGGTACATATATGCCCATGCCCACCAATCTTTTACAAAAGTAGCGTTACACAATTCTACACTGGTCATACAAGGCAGCACTATCACATATATGATTCCAGTCACATTTAATTTTCCTTTTACAGTAAATACCATCACTACCTTTCTGCTTGTTAATTCCAATTGTCGAGATGGCTTCCATAGGCAGATCGGTAACATATGTGCTCATCCATTGTTTCATTTGCTAACTGATGTAGTTATTACTTAAGCTGGCTTGTGTGGCTAATAATTGCCTGAAACTTATGCGATTGCACAATATTTCTTGTTGGATGTCTATGTAAGAGCTTTGTAGGGACCTAAAGAAGTTGATGCCGTTTACTTGTGATTTTCAAAGTTATAGAAAGTTTCTCTGTTTATACTTCAGTAATCACAGCTAGTATCTGACTTGACCCAAGCAATTAGCAGCTAATAGCTGATATGTATAGTATGACTTGAGGAAGGAAATAGAGGATCTGATGGACAGTGCAAATGCACCAGTGAGTTAGAAAAGTGGAGATAGAAAATGACATTTAGTTTGGGATGGGGTGGTTGATCCGATTTTTTCTGTTTCTCTGCTTGTAGCAATGCTATGCAGTAAGTTGGATGTAGCTTCATTTCTCCTTCCAGCTTATTGGGTTCAAACAAGTTTAAACTTGGATCATCTCCTCTTTTTGGGCAGCTTGCCCTGCCTGCTGTGTATCAGATGTTTGAGGGACACTTGCATACCTGAAGATGCTATGTTAAAAGATCCAAGGAGGCTTTATGCACCAGGTCGGATATATCACATTGTAGAGAGAAAAATGTTCAGGTGTGGAAGATACCCCCCAGTGGTGAAAACAGCTGTGCCTGTGGATGGTAGATTTGAGCATATAGTTCTTTCCTGCAATGCCACAATGGACCATGCCATTATTTGGATCGAGAGGGAAGCACAAAAGGCGTTGGATTTGATGCTTGAGAAGGAGAAGGCAATGGAGGTGCCATCGGAGCAGAGGATGGAGAGGAACGAGAGCCTGCAGAGGGAGCACGTAGAGGAGCACAAGGCAGCTCTGCGCAGGGCTGTGACGCTCTCGGTGCCGGACGCTCGGTCGCCGTCGGCTTACGGCACCTTCGGCGAGCAGCCGGAGAGAAGCGAGAGCTTCCCGCCGGTGTCAGCGATGGCCAGGCAGCGTATGAGCTGGAACGACCTCATCGAGCGGGTCTTCGACAGGGACGAGTCAGGCCACATTGTGCTGCGCAGCTCACCTTCTCCCTAGCTGTGCCTGTACATTCCATTCCATCCTCTTTCTTCTTCCTTTCCTTACCCTGGTATGCACCTTTTCATCATCTCTTTTTATTTTTTTATGTATATGCAACTTCAACTTCTGCTGTTATTTTTTCTTCCTTATTATTCATTCATGGTATCTACCGACGCATTTT] [+] EMBL AK069587 [TTCTACCAAACCAAATCAAATTCTCGCTTCTTCTTGGACGCCGGGAACACCAAACCAACGAACAAACGGCGAATCCAAGTTTCGATTCGATTCGGTTCGGTTCCAACTCCAATCCGCGGCGCCGGCGGCAACAATGGCGGCGCTCCACGCACTCCAGCGATCTCAGTGGAGAATGAGGACTGAGGAGTAGTGATCTCGAATCGTGCAGAGCAGGGCTCCGCCTCCAGGGCAGAGGCATGTCTCTCGCCTGCGGGCTCCCGCTGCTGGAATGCGTCTACTGCCTGGGATGCGCGCGGTGGGCGTGGAAGCGGTGCCTCCACTCCGGCGACCGCGACAGCGCCACCTGGGGCCTCGCCTCCGCCGATGACTTCGCCCCCGTCCCGCGCCTCTGCCGCCTCATCATGGCCAACTACGACCACCACCCCTGCCACCCCCTCGACGCCCGCTGCGTCGTCCGCCGCCGCACCTACGCCGACACCCGCGGCCGCGTCACCCCCTACCTCCTCTACCTCGACCACCCCAACTCCGACATCGTCCTCGCCCTCCGCGGCCTCAACCTCGCCAGGGAGACCGACTACGCCCTCCTCCTCGACAACCGCCTCGGCAAGCGCCGCTTCCATGGCGGCTACGTCCACAACGGCCTCCTCCGCGCCGCCGCCTGGGTTCTCGACGCCGAGTGCGACCTCCTCCGGGACCTCCTCGCCGACCACCCCGACTACACCCTCACCTTCACTGGCCACTCCCTCGGCGCCGGCATCGCCGCCATGCTCACCGTCGTCGTCCTCCTCAACCTCGACAAGCTCGGCACCAATCTCCACAGGAGCCGCATCAGGTGCTACGCCATGGCGCCTGCCAGATGTATGTCGCTCAATCTGGCTATCAGATATGCCGACGTTATCAACTCTGTTGTCCTGCAAGTGAGCCCAGCGTTGTTCCCCCTTTTCAATTCCTGCTATACTTGCTTATTCCTCCTCACCATTCCTACCACATCACACTTGATCTGCATTCTTCATCTTCTGTCTCAACAAAATAATTATAGCTCCTTATTGACAGGATGATTTCTTGCCTCGGACAGCCACTCCTTTAGAAGACATTTTCAAGTCAATCCTATGGTACATATATGCCCATGCCCACCAATCTTTTACAAAAGTAGCGTTACACAATTCTACACTGGTCATACAAGGCAGCACTATCACATATATGATTCCAGTCACATTTAATTTTCCTTTTACAGTAAATACCATCACTACCTTTCTGCTTGTTAATTCCAATTGTCGAGATGGCTTCCATAGGCAGATCGGTAACATATGTGCTCATCCATTGTTTCATTTGCTAACTGATGTAGTTATTACTTAAGCTGGCTTGTGTGGCTAATAATTGCCTGAAACTTATGCGATTGCACAATATTTCTTGTTGGATGTCTATGTAAGAGCTTTGTAGGGACCTAAAGAAGTTGATGCCGTTTACTTGTGATTTTCAAAGTTATAGAAAGTTTCTCTGTTTATACTTCAGTAATCACAGCTAGTATCTGACTTGACCCAAGCAATTAGCAGCTAATAGCTGATATGTATAGTATGACTTGAGGAAGGAAATAGAGGATCTGATGGACAGTGCAAATGCACCAGTGAGTTAGAAAAGTGGAGATAGAAAATGACATTTAGTTTGGGATGGGGTGGTTGATCCGATTTTTTCTGTTTCTCTGCTTGTAGCAATGCTATGCAGTAAGTTGGATGTAGCTTCATTTCTCCTTCCAGCTTATTGGGTTCAAACAAGTTTAAACTTGGATCATCTCCTCTTTTTGGGCAGCTTGCCCTGCCTGCTGTGTATCAGATGTTTGAGGGACACTTGCATACCTGAAGATGCTATGTTAAAAGATCCAAGGAGGCTTTATGCACCAGGTCGGATATATCACATTGTAGAGAGAAAAATGTTCAGGTGTGGAAGATACCCCCCAGTGGTGAAAACAGCTGTGCCTGTGGATGGTAGATTTGAGCATATAGTTCTTTCCTGCAATGCCACAATGGACCATGCCATTATTTGGATCGAGAGGGAAGCACAAAAGGCGTTGGATTTGATGCTTGAGAAGGAGAAGGCAATGGAGGTGCCATCGGAGCAGAGGATGGAGAGGAACGAGAGCCTGCAGAGGGAGCACGTAGAGGAGCACAAGGCAGCTCTGCGCAGGGCTGTGACGCTCTCGGTGCCGGACGCTCGGTCGCCGTCGGCTTACGGCACCTTCGGCGAGCAGCCGGAGAGAAGCGAGAGCTTCCCGCCGGTGTCAGCGATGGCCAGGCAGCGTATGAGCTGGAACGACCTCATCGAGCGGGTCTTCGACAGGGACGAGTCAGGCCACATTGTGCTGCGCAGCTCACCTTCTCCCTAGCTGTGCCTGTACATTCCATTCCATCCTCTTTCTTCTTCCTTTCCTTACCCTGGTATGCACCTTTTCATCATCTCTTTTTATTTTTTTATGTATATGCAACTTCAACTTCTGCTGTTATTTTTTCTTCCTTATTATTCATTCATGGTATCTACCGACGCATTTT] consensusID : consensus_3739#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence [TTTTTCTCCTTTTTCTTTTCGCTTTTCTCAGCTTCCACGCCATCTCCATTGTGCTGCGCAGCTCACCTTCTCCCTAGCTGTGCCTGTACATTCCATTCCATCCTCTTTCTTCTTCCTTTCCTTACCCTGGTATGCACCTTTTCATCATCTCTTTTTATTTTTTTATGTATATGCAACTTCAACTTCTGCTGTTATTTTTTCTTCCTTATTATTCATTCATGGTATCTACCGACGCATTTTTTGCTGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AU181791 [TTTTTCTCCTTTTTCTTTTCGCTTTTCTCAGCTTCCACGCCATCTCCATTGTGCTGCGCAGCTCACCTTCTCCCTAGCTGTGCCTGTACATTCCATTCCATCCTCTTTCTTCTTCCTTTCCTTACCCTGGTATGCACCTTTTCATCATCTCTTTTTATTTTTTTATGTATATGCAACTTCAACTTCTGCTGTTATTTTTTCTTCCTTATTATTCATTCATGGTATCTACCGACGCATTTTTTGCTGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3739#0 TTCTACCAAACCAAATCAAATTCTCGCTTCTTCTTGGACGCCGGGAACACCAAACCAACG 60 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 AACAAACGGCGAATCCAAGTTTCGATTCGATTCGGTTCGGTTCCAACTCCAATCCGCGGC 120 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 GCCGGCGGCAACAATGGCGGCGCTCCACGCACTCCAGCGATCTCAGTGGAGAATGAGGAC 180 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 TGAGGAGTAGTGATCTCGAATCGTGCAGAGCAGGGCTCCGCCTCCAGGGCAGAGGCATGT 240 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 CTCTCGCCTGCGGGCTCCCGCTGCTGGAATGCGTCTACTGCCTGGGATGCGCGCGGTGGG 300 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 CGTGGAAGCGGTGCCTCCACTCCGGCGACCGCGACAGCGCCACCTGGGGCCTCGCCTCCG 360 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 CCGATGACTTCGCCCCCGTCCCGCGCCTCTGCCGCCTCATCATGGCCAACTACGACCACC 420 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 ACCCCTGCCACCCCCTCGACGCCCGCTGCGTCGTCCGCCGCCGCACCTACGCCGACACCC 480 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 GCGGCCGCGTCACCCCCTACCTCCTCTACCTCGACCACCCCAACTCCGACATCGTCCTCG 540 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 CCCTCCGCGGCCTCAACCTCGCCAGGGAGACCGACTACGCCCTCCTCCTCGACAACCGCC 600 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 TCGGCAAGCGCCGCTTCCATGGCGGCTACGTCCACAACGGCCTCCTCCGCGCCGCCGCCT 660 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 GGGTTCTCGACGCCGAGTGCGACCTCCTCCGGGACCTCCTCGCCGACCACCCCGACTACA 720 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 CCCTCACCTTCACTGGCCACTCCCTCGGCGCCGGCATCGCCGCCATGCTCACCGTCGTCG 780 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 TCCTCCTCAACCTCGACAAGCTCGGCACCAATCTCCACAGGAGCCGCATCAGGTGCTACG 840 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 CCATGGCGCCTGCCAGATGTATGTCGCTCAATCTGGCTATCAGATATGCCGACGTTATCA 900 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 ACTCTGTTGTCCTGCAAGTGAGCCCAGCGTTGTTCCCCCTTTTCAATTCCTGCTATACTT 960 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 GCTTATTCCTCCTCACCATTCCTACCACATCACACTTGATCTGCATTCTTCATCTTCTGT 1020 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 CTCAACAAAATAATTATAGCTCCTTATTGACAGGATGATTTCTTGCCTCGGACAGCCACT 1080 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 CCTTTAGAAGACATTTTCAAGTCAATCCTATGGTACATATATGCCCATGCCCACCAATCT 1140 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 TTTACAAAAGTAGCGTTACACAATTCTACACTGGTCATACAAGGCAGCACTATCACATAT 1200 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 ATGATTCCAGTCACATTTAATTTTCCTTTTACAGTAAATACCATCACTACCTTTCTGCTT 1260 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 GTTAATTCCAATTGTCGAGATGGCTTCCATAGGCAGATCGGTAACATATGTGCTCATCCA 1320 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 TTGTTTCATTTGCTAACTGATGTAGTTATTACTTAAGCTGGCTTGTGTGGCTAATAATTG 1380 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 CCTGAAACTTATGCGATTGCACAATATTTCTTGTTGGATGTCTATGTAAGAGCTTTGTAG 1440 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 GGACCTAAAGAAGTTGATGCCGTTTACTTGTGATTTTCAAAGTTATAGAAAGTTTCTCTG 1500 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 TTTATACTTCAGTAATCACAGCTAGTATCTGACTTGACCCAAGCAATTAGCAGCTAATAG 1560 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 CTGATATGTATAGTATGACTTGAGGAAGGAAATAGAGGATCTGATGGACAGTGCAAATGC 1620 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 ACCAGTGAGTTAGAAAAGTGGAGATAGAAAATGACATTTAGTTTGGGATGGGGTGGTTGA 1680 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 TCCGATTTTTTCTGTTTCTCTGCTTGTAGCAATGCTATGCAGTAAGTTGGATGTAGCTTC 1740 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 ATTTCTCCTTCCAGCTTATTGGGTTCAAACAAGTTTAAACTTGGATCATCTCCTCTTTTT 1800 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 GGGCAGCTTGCCCTGCCTGCTGTGTATCAGATGTTTGAGGGACACTTGCATACCTGAAGA 1860 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 TGCTATGTTAAAAGATCCAAGGAGGCTTTATGCACCAGGTCGGATATATCACATTGTAGA 1920 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 GAGAAAAATGTTCAGGTGTGGAAGATACCCCCCAGTGGTGAAAACAGCTGTGCCTGTGGA 1980 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 TGGTAGATTTGAGCATATAGTTCTTTCCTGCAATGCCACAATGGACCATGCCATTATTTG 2040 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 GATCGAGAGGGAAGCACAAAAGGCGTTGGATTTGATGCTTGAGAAGGAGAAGGCAATGGA 2100 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 GGTGCCATCGGAGCAGAGGATGGAGAGGAACGAGAGCCTGCAGAGGGAGCACGTAGAGGA 2160 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 GCACAAGGCAGCTCTGCGCAGGGCTGTGACGCTCTCGGTGCCGGACGCTCGGTCGCCGTC 2220 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 GGCTTACGGCACCTTCGGCGAGCAGCCGGAGAGAAGCGAGAGCTTCCCGCCGGTGTCAGC 2280 consensus_3739#1 ------------------------------------------------------------ consensus_3739#0 GATGGCCAGGCAGCGTATGAGCTGGAACGACCTCATCGAGCGGGTCTTCGACAGGGACGA 2340 consensus_3739#1 ----------------------TTTTTCTCCTTTTTCTTTTCGCTTTTCT-CAGCTTCCA 37 * * * * ** * * *** *** * * consensus_3739#0 GTCAGGCCACATTGTGCTGCGCAGCTCACCTTCTCCCTAGCTGTGCCTGTACATTCCATT 2400 consensus_3739#1 CGCCATCTCCATTGTGCTGCGCAGCTCACCTTCTCCCTAGCTGTGCCTGTACATTCCATT 97 * * *************************************************** consensus_3739#0 CCATCCTCTTTCTTCTTCCTTTCCTTACCCTGGTATGCACCTTTTCATCATCTCTTTTTA 2460 consensus_3739#1 CCATCCTCTTTCTTCTTCCTTTCCTTACCCTGGTATGCACCTTTTCATCATCTCTTTTTA 157 ************************************************************ consensus_3739#0 TTTTTTTATGTATATGCAACTTCAACTTCTGCTGTTATTTTTTCTTCCTTATTATTCATT 2520 consensus_3739#1 TTTTTTTATGTATATGCAACTTCAACTTCTGCTGTTATTTTTTCTTCCTTATTATTCATT 217 ************************************************************ consensus_3739#0 CATGGTATCTACCGACGCATTTT------------------------------------- 2543 consensus_3739#1 CATGGTATCTACCGACGCATTTTTTGCTGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 277 *********************** consensus_3739#0 ---------------------------------------------------- consensus_3739#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 329 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||