|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3748#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1976 fasta sequence
[CCCATCGGCCTTGTTGGTTTGAAATACAGAGTCCAGGTGCGAGCCAAGTCCCCTCTCTTCGCGACTGATTGCGTTTCCTTAAATATGCAAGGCAGGTAGAGGGCCGGGTGAGAAATTTTGAGATTTCGACCCACAGAGGGCGGAAAACCCTTGGATTTTAGATTCACTCAAGGCTTCGTCGCGTCATGGGTATTTTCAAGTTGAATCTGCTCCTAAAGCTGCAGCGGCAGCGGCAGCGCCGTCGTCGCCAAATCCAAGCCCGTAATGGATCAGTTTTGATTCATCCACGGGATAAAATAAACGCTCCAGCCTGTCAAAATAACACACACTCTTGGAGTGGCCAAGCGAAGTGTTCAGACCCAACGCTTCTGGAGGACGTCTCGTGTCATATACATTCCCTGATGTCTATGCGGGATGCTGCTCGTGTTGCCTGTGTGTCTCGGGCGTTTGCACGTTCCTGGAGATGCCTTCCCAACCTCGACTTCAGTGAGGGATCATTAGGAATAAATAGAAGTACATGCAAAAAAGATGAGAAACTGGGAGATTTGACCAGCAAAATTGATTGGATTCTGAAAAATCACTCAGGCATTGGCATAAAGAAACTCATCATTCAGGTTGGCAGTGTATACAGTCGGGACAGTAGTCATCTTGCTCATCTCGATAGTTGGCTTCAGTGTGCTGTTAAACCAGGGATTGAAGAGCTGATTGTTAATCTGTCATCAATGAATGCAAAATGCAATTTCCCATGTGAACTTTTATCTAGTGGAACTGGAGATTCACTTCGCTATATTTATCTTGCCTCTTGCAACTTCCATCCCACAGTAAGAATTGGTTGCTTGAAAAGCTTGACAAGACTACAGCTGTGTATGGTGAATATCACGGAAAACGAGCTAAGGTGCCTTCTTTCCATTTCATTGGGTTTGGAGCGGTTGGAACTCAGGCACTGCAGTACGTTAAAATGCTTGAAAGTACCATGCCTGCAGCGTCTCAGCTACCTAGATGTTATGACTTGCACCGGGCTGCAAGTTATAGAGAGCAAAGCTCCAAATCTCTCCAGTATTCGCTTTGAAGGTGACCTCTATGTACAATTGTCACTTGGTGAACCACTGCAAATTAAGCAATTGTACAGGTTATGTAATGATGCTGCCTTTTATGCTCGTACTGAGCTGCCATCCAGCATGCCAAATCTTGAAAGGCTTATTATACATTCTGACACTGAGATGGTCAATACACCAATGGTGCCTAGCAAATTCTATCACCTCAAGTACTTGAGTATTGCCCTTGGTGGACAGACCTATGATTACCTTTCTCTGGTTTCCTTTTTTGATGCTTCTCCTTTCTTGGAGACTTTTATCTTGAATGCACTCCGAGAACGCACGGAACGTGCCACAATTTTTGGGGATCCTTCAGGTCTGAGGATGATGCCAGAGCACCGTCATGACAAACTCAAGTGTGTGAAGATAATCAATTTCTCTTCTGTGAAGACTTTGGTTGAGTTAACATGTCACATTGTTGAATCAGCGACAGCACTCGAATGTCTTACGTTGGACACAACGTCAGGTTCGCCTAGATGTTCTGTGAACAGACTTGGTAAATGCTTCTTGATGCGCAGAGAGACACTCATGGAAGCCCACAGAGCACTCAAGGCTGTTCAAACATACATCGAGCTCAAAGTTCCCTCCAAAGTTGAGTTAAACGTCTTGGAGCCTTGCAGCCGGTGCCATGCTCTTGACCTTTAGATGTCAAATATGTGCGTGTGGTTGTTCTTAATAACCAGTATTGCAACTGTCAGTTACAAGTGTTGTTTTATTAAACGTACATTTGCCCCGAAACTATCAGGCTATCAGCCCTGTTTACTGTTGAGGTTTGTAATGACATGGATGTGGTAATGTTTCATTCTGTTATTTCTCTTGAGACTTATGATTCTTTATTTGCTGTGTTTGTAGGATTGATTGTTGATAATATGTTAATAATGA]
[+] EMBL AK102063 [CCCATCGGCCTTGTTGGTTTGAAATACAGAGTCCAGGTGCGAGCCAAGTCCCCTCTCTTCGCGACTGATTGCGTTTCCTTAAATATGCAAGGCAGGTAGAGGGCCGGGTGAGAAATTTTGAGATTTCGACCCACAGAGGGCGGAAAACCCTTGGATTTTAGATTCACTCAAGGCTTCGTCGCGTCATGGGTATTTTCAAGTTGAATCTGCTCCTAAAGCTGCAGCGGCAGCGGCAGCGCCGTCGTCGCCAAATCCAAGCCCGTAATGGATCAGTTTTGATTCATCCACGGGATAAAATAAACGCTCCAGCCTGTCAAAATAACACACACTCTTGGAGTGGCCAAGCGAAGTGTTCAGACCCAACGCTTCTGGAGGACGTCTCGTGTCATATACATTCCCTGATGTCTATGCGGGATGCTGCTCGTGTTGCCTGTGTGTCTCGGGCGTTTGCACGTTCCTGGAGATGCCTTCCCAACCTCGACTTCAGTGAGGGATCATTAGGAATAAATAGAAGTACATGCAAAAAAGATGAGAAACTGGGAGATTTGACCAGCAAAATTGATTGGATTCTGAAAAATCACTCAGGCATTGGCATAAAGAAACTCATCATTCAGGTTGGCAGTGTATACAGTCGGGACAGTAGTCATCTTGCTCATCTCGATAGTTGGCTTCAGTGTGCTGTTAAACCAGGGATTGAAGAGCTGATTGTTAATCTGTCATCAATGAATGCAAAATGCAATTTCCCATGTGAACTTTTATCTAGTGGAACTGGAGATTCACTTCGCTATATTTATCTTGCCTCTTGCAACTTCCATCCCACAGTAAGAATTGGTTGCTTGAAAAGCTTGACAAGACTACAGCTGTGTATGGTGAATATCACGGAAAACGAGCTAAGGTGCCTTCTTTCCATTTCATTGGGTTTGGAGCGGTTGGAACTCAGGCACTGCAGTACGTTAAAATGCTTGAAAGTACCATGCCTGCAGCGTCTCAGCTACCTAGATGTTATGACTTGCACCGGGCTGCAAGTTATAGAGAGCAAAGCTCCAAATCTCTCCAGTATTCGCTTTGAAGGTGACCTCTATGTACAATTGTCACTTGGTGAACCACTGCAAATTAAGCAATTGTACAGGTTATGTAATGATGCTGCCTTTTATGCTCGTACTGAGCTGCCATCCAGCATGCCAAATCTTGAAAGGCTTATTATACATTCTGACACTGAGATGGTCAATACACCAATGGTGCCTAGCAAATTCTATCACCTCAAGTACTTGAGTATTGCCCTTGGTGGACAGACCTATGATTACCTTTCTCTGGTTTCCTTTTTTGATGCTTCTCCTTTCTTGGAGACTTTTATCTTGAATGCACTCCGAGAACGCACGGAACGTGCCACAATTTTTGGGGATCCTTCAGGTCTGAGGATGATGCCAGAGCACCGTCATGACAAACTCAAGTGTGTGAAGATAATCAATTTCTCTTCTGTGAAGACTTTGGTTGAGTTAACATGTCACATTGTTGAATCAGCGACAGCACTCGAATGTCTTACGTTGGACACAACGTCAGGTTCGCCTAGATGTTCTGTGAACAGACTTGGTAAATGCTTCTTGATGCGCAGAGAGACACTCATGGAAGCCCACAGAGCACTCAAGGCTGTTCAAACATACATCGAGCTCAAAGTTCCCTCCAAAGTTGAGTTAAACGTCTTGGAGCCTTGCAGCCGGTGCCATGCTCTTGACCTTTAGATGTCAAATATGTGCGTGTGGTTGTTCTTAATAACCAGTATTGCAACTGTCAGTTACAAGTGTTGTTTTATTAAACGTACATTTGCCCCGAAACTATCAGGCTATCAGCCCTGTTTACTGTTGAGGTTTGTAATGACATGGATGTGGTAATGTTTCATTCTGTTATTTCTCTTGAGACTTATGATTCTTTATTTGCTGTGTTTGTAGGATTGATTGTTGATAATATGTTAATAATGA]
consensusID : consensus_3748#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence
[ACAGAGGGCGGAAAACCCTTGGATTTTAGATTCACTCAAGGCTTCGTCGCGTCATGGGTATTTTCAAGTTGAATCTGCTCCTAAAGCTGCAGCGGCAGCGGCAGCGCCGTCGTCGCCAAATCCAAGCCCGTAGTAAGCCAAATCAACTCTATGCTATCGTATTATTTGGTATTTGTACAGCGCTCACTACAAGATCCCCTTCTTTTGCATTAAAAAGTAACTTCTTTTTCCGTCAGAGATGTTCTGTGGATCGTTTCCCTCTGGGGAAAATCTTGTATGTGTGCGCGTTGGGGGATGGACGGCGGCTTACTGATTTTTGTTTTATCTAAGCAGTAGTTTACTTAGTTTTCACTCTTCGTGTAAATTTCACAAAACTACCAAATTATCTCAAACCTACAGATTTGAAGTGTTATCACAAAACTAGGGGTTTAACACTAAATTTATCACAAAACTACATATATATGGCAAAGTATCGTAAAACTACAGATTTAATATTTGATGGTATCA]
[+] EMBL CF303147 [ACAGAGGGCGGAAAACCCTTGGATTTTAGATTCACTCAAGGCTTCGTCGCGTCATGGGTATTTTCAAGTTGAATCTGCTCCTAAAGCTGCAGCGGCAGCGGCAGCGCCGTCGTCGCCAAATCCAAGCCCGTAGTAAGCCAAATCAACTCTATGCTATCGTATTATTTGGTATTTGTACAGCGCTCACTACAAGATCCCCTTCTTTTGCATTAAAAAGTAACTTCTTTTTCCGTCAGAGATGTTCTGTGGATCGTTTCCCTCTGGGGAAAATCTTGTATGTGTGCGCGTTGGGGGATGGACGGCGGCTTACTGATTTTTGTTTTATCTAAGCAGTAGTTTACTTAGTTTTCACTCTTCGTGTAAATTTCACAAAACTACCAAATTATCTCAAACCTACAGATTTGAAGTGTTATCACAAAACTAGGGGTTTAACACTAAATTTATCACAAAACTACATATATATGGCAAAGTATCGTAAAACTACAGATTTAATATTTGATGGTATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3748#0 CCCATCGGCCTTGTTGGTTTGAAATACAGAGTCCAGGTGCGAGCCAAGTCCCCTCTCTTC 60
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 GCGACTGATTGCGTTTCCTTAAATATGCAAGGCAGGTAGAGGGCCGGGTGAGAAATTTTG 120
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 AGATTTCGACCCACAGAGGGCGGAAAACCCTTGGATTTTAGATTCACTCAAGGCTTCGTC 180
consensus_3748#1 ------------ACAGAGGGCGGAAAACCCTTGGATTTTAGATTCACTCAAGGCTTCGTC 48
************************************************
consensus_3748#0 GCGTCATGGGTATTTTCAAGTTGAATCTGCTCCTAAAGCTGCAGCGGCAGCGGCAGCGCC 240
consensus_3748#1 GCGTCATGGGTATTTTCAAGTTGAATCTGCTCCTAAAGCTGCAGCGGCAGCGGCAGCGCC 108
************************************************************
consensus_3748#0 GTCGTCGCCAAATCCAAGCCCGTAATGGATCAGTTTTGATTCATCCACGGGATAAAATAA 300
consensus_3748#1 GTCGTCGCCAAATCCAAGCCCGTAGTAAGCCAAATCAACTCTAT----GCTATCGTATTA 164
************************ * ** * * ** * ** ** *
consensus_3748#0 ACGCTCCAGCCTGTCAAAATAACACACACTCTTGGAGTGGCCAAGCGAAGTGTTCAGACC 360
consensus_3748#1 ----TTTGG--TATTTGTACAGCGCTCACTACAAGA-TCCCCTTCTTTTGCATTAAAAAG 217
* * * * * * * * **** ** * ** * ** * *
consensus_3748#0 CAACGCTTCTGGAGGACGTCTCGTGTCATATACATTCCCTGATGTCTATGCGGGATGCTG 420
consensus_3748#1 TAAC--TTCT--------TTTTCCGTCAGAGATGTTCTGTGG-ATCGTTTCCCTCTGGGG 266
*** **** * * **** * * *** ** ** * * ** *
consensus_3748#0 CTCGTGTTGCCTGTGTGTCTCGGGCGTTTGCACGTTCCTGGAGATGCCTTCCCAACCTCG 480
consensus_3748#1 AAAATCTTGTATGTGTGC-----GCGTTGGGGGATG---GACGGCGGCTTACTGATTTTT 318
* *** ****** ***** * * * * * *** * * *
consensus_3748#0 ACTTCAGTGAGGGATCATTAGGAATAAATAGAAGTACATGCAAAAAAGATGAGAAACTGG 540
consensus_3748#1 GTTTTATCTAAGCAGTAGTTTACTTAGTTTTCACTCTTCGTGTAAATTTCACAAAACTAC 378
** * * * * * * ** * * * * *** *****
consensus_3748#0 GAGATTTGACCAGCAAAATTGATTGGA--TTCTGAAAAATCACTCAGGCATTGGCATAAA 598
consensus_3748#1 CAAATTATCTCAAACCTACAGATTTGAAGTGTTATCACAAAACTAGGGGTTTAACACTAA 438
* *** ** * **** ** * * * * *** ** ** ** **
consensus_3748#0 GAAACTCATCATTCAGGTTGGCAGTGTATACAGTCGGGACAGTAGTCATCTTGCTCATCT 658
consensus_3748#1 ---ATTTATCA--CAAAACTACA-TATATATGGCAAAG--TATCGTAAAACTACAGAT-T 489
* * **** ** ** * **** * * * ** * * * ** *
consensus_3748#0 CGATAGTTGGCTTCAGTGTGCTGTTAAACCAGGGATTGAAGAGCTGATTGTTAATCTGTC 718
consensus_3748#1 TAATATTTGATGGTATCA------------------------------------------ 507
*** *** *
consensus_3748#0 ATCAATGAATGCAAAATGCAATTTCCCATGTGAACTTTTATCTAGTGGAACTGGAGATTC 778
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 ACTTCGCTATATTTATCTTGCCTCTTGCAACTTCCATCCCACAGTAAGAATTGGTTGCTT 838
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 GAAAAGCTTGACAAGACTACAGCTGTGTATGGTGAATATCACGGAAAACGAGCTAAGGTG 898
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 CCTTCTTTCCATTTCATTGGGTTTGGAGCGGTTGGAACTCAGGCACTGCAGTACGTTAAA 958
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 ATGCTTGAAAGTACCATGCCTGCAGCGTCTCAGCTACCTAGATGTTATGACTTGCACCGG 1018
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 GCTGCAAGTTATAGAGAGCAAAGCTCCAAATCTCTCCAGTATTCGCTTTGAAGGTGACCT 1078
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 CTATGTACAATTGTCACTTGGTGAACCACTGCAAATTAAGCAATTGTACAGGTTATGTAA 1138
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 TGATGCTGCCTTTTATGCTCGTACTGAGCTGCCATCCAGCATGCCAAATCTTGAAAGGCT 1198
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 TATTATACATTCTGACACTGAGATGGTCAATACACCAATGGTGCCTAGCAAATTCTATCA 1258
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 CCTCAAGTACTTGAGTATTGCCCTTGGTGGACAGACCTATGATTACCTTTCTCTGGTTTC 1318
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 CTTTTTTGATGCTTCTCCTTTCTTGGAGACTTTTATCTTGAATGCACTCCGAGAACGCAC 1378
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 GGAACGTGCCACAATTTTTGGGGATCCTTCAGGTCTGAGGATGATGCCAGAGCACCGTCA 1438
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 TGACAAACTCAAGTGTGTGAAGATAATCAATTTCTCTTCTGTGAAGACTTTGGTTGAGTT 1498
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 AACATGTCACATTGTTGAATCAGCGACAGCACTCGAATGTCTTACGTTGGACACAACGTC 1558
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 AGGTTCGCCTAGATGTTCTGTGAACAGACTTGGTAAATGCTTCTTGATGCGCAGAGAGAC 1618
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 ACTCATGGAAGCCCACAGAGCACTCAAGGCTGTTCAAACATACATCGAGCTCAAAGTTCC 1678
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 CTCCAAAGTTGAGTTAAACGTCTTGGAGCCTTGCAGCCGGTGCCATGCTCTTGACCTTTA 1738
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 GATGTCAAATATGTGCGTGTGGTTGTTCTTAATAACCAGTATTGCAACTGTCAGTTACAA 1798
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 GTGTTGTTTTATTAAACGTACATTTGCCCCGAAACTATCAGGCTATCAGCCCTGTTTACT 1858
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 GTTGAGGTTTGTAATGACATGGATGTGGTAATGTTTCATTCTGTTATTTCTCTTGAGACT 1918
consensus_3748#1 ------------------------------------------------------------
consensus_3748#0 TATGATTCTTTATTTGCTGTGTTTGTAGGATTGATTGTTGATAATATGTTAATAATGA 1976
consensus_3748#1 ----------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||