These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3760#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1902 fasta sequence [AAGAAGAAGAAGAAGAGAGAAAATGGCGATTACCCCCGTCGATTCCCCCTCCCCTCCATCTCCGATCAGCAGAGCCAACCTGCACTTCTCCCGCCTCCTCGCGCTCCCGGCCGGTGACGGCGAGCTGGCTCTCGGTGTTAACACGGCGACCCCCCACCCTAGCATCCTCCTGTGTGTGCGGCCTCCTTGCGAGCAGGTCTGGAGCGGCGGCGCGCGCGGCCGGCCCCCCATCTCGGTCCTCGAATCGAATCGGAGATAGTACTTCAGTTTGGAAAAATGTCAGGAGATTAAAATTGGTGGAAGCCACTTGGCGCAAGTGCTACTCTTCACTCTTCAGTCACTGAATAATGAAGTATCCCTGTACAATGAAAAGGTATTTCTGGCATTTTATGATGAGAGGATAATCACCTTTTTTCAGGAATAAGTAAAAGATTTGGGCATCATTGCATCAAGCCGAACAAAAAGGTTTATAAAACATCAAACACATCCTGTGTGTTGAGCACAATGGTCAAACGACTGGAACAAAGGAAAAAAAAACCGACAATTCGACCTAAGCTACTGACAGAAACTAAGGAATCAGACTACTAAATGAGGCAAGCTCTTACTGTGCGACCCACTAATTCGCTTCTTCTGCAATTGACGCAATGATCCAAGAACAAGCACTTTTGCAGAAGTGGAGGTGAGACATCTTTGCAGGGGTTGGCCTGTTGACAGGAAGCCTATTGAGTTTACAAAATGGTGGCATGGTGTAATGTTGTAATATTTTGCTACTCACTTCAGTTTGCAGTTAATGAGTTTTGGAGTAATCATAGCATTAGCCAAATGTTTTCTGACATAGCAAAGGTCTCCAAGGTCTCAGGCTCTCAGCTTACCATGGCAGACCTGGTCTTACTGATTGTGCACTATTTCCTCATAGATATTCCCCTTCTAGCAGTAATAGCATAATTCCCTTCTTTCTGTGGAATTTCGTATGTTCAAATTATTTCAATATTGCCTCAGTTTTATACTTTGCTGGTGTTAATTGCTACTGAACTACTGATAATATTGGAAAACCTGGCCTTATATGGAATTACTGAAGTACCTTCCCTTCGATCTCAGTTTACCATGGGAGACCTGGCCTTACTAGATTGTGTACTAGTTTCTGGTCATAGATGTTCCCCTTTTATGGGCAGTACCTTACTAATAATCCCTTTTCTTTCCTTTTGACACTGACAGTCTTTAAATTACTTCAATACTAACGAATTTGCTAGTGCTAATTGGTACTGACAATGTTGGAAAACCGCAGCAGTAATTGGTGTGGCATGTTCTGCCTGAGATGTTCAGTTAATAACGTTGTTCCAGTCTACTTTGTTACACTCAGATTGCCTTTTTGTTTGTTTTACTTTAGGTAGTACTTCAGTTTGCAAAAGACGATGATATTGGATTTGGTGGAAGTCACTCGGCACAAGTGCTGCTGTCAAGAGACAGGAAGCTGACCCCTGTACAATGTAAAGTCATTGCTGCCATGCACAGGAATCCTGTGCATATATGATCCAAGATGCAACACTTTCGCACAAGCGGAGATCAGGATTCAGGAGATAAGTTCAGCTTACTGAAGACCTGCTGAGTTCAGCTTGAAGTTGACAAGTTTTGCAGAAATAGCTGACTCTTTTTTCACATTGGAGCCTGTGAAACTGTTGTAAATTCTTGATGACGCTAGATCTTTTTGTTTTGTATATTCTTCAGTAAATGTAAATATAATGTAAGATGCACTTTTAAGTACGAATCCTGATATAAGGGGCACAGCAGCTCTGTTTTGCAGCTGCTAGTATGGTGGTCATGTAAATCGATGCAAGAAAAGCACCAGGGTGTCAGTGGCACTCGTGCTATAGTTGACATTTGCAGTTTAATAAAAAGATGAAA] [+] EMBL AK106645 [AAGAAGAAGAAGAAGAGAGAAAATGGCGATTACCCCCGTCGATTCCCCCTCCCCTCCATCTCCGATCAGCAGAGCCAACCTGCACTTCTCCCGCCTCCTCGCGCTCCCGGCCGGTGACGGCGAGCTGGCTCTCGGTGTTAACACGGCGACCCCCCACCCTAGCATCCTCCTGTGTGTGCGGCCTCCTTGCGAGCAGGTCTGGAGCGGCGGCGCGCGCGGCCGGCCCCCCATCTCGGTCCTCGAATCGAATCGGAGATAGTACTTCAGTTTGGAAAAATGTCAGGAGATTAAAATTGGTGGAAGCCACTTGGCGCAAGTGCTACTCTTCACTCTTCAGTCACTGAATAATGAAGTATCCCTGTACAATGAAAAGGTATTTCTGGCATTTTATGATGAGAGGATAATCACCTTTTTTCAGGAATAAGTAAAAGATTTGGGCATCATTGCATCAAGCCGAACAAAAAGGTTTATAAAACATCAAACACATCCTGTGTGTTGAGCACAATGGTCAAACGACTGGAACAAAGGAAAAAAAAACCGACAATTCGACCTAAGCTACTGACAGAAACTAAGGAATCAGACTACTAAATGAGGCAAGCTCTTACTGTGCGACCCACTAATTCGCTTCTTCTGCAATTGACGCAATGATCCAAGAACAAGCACTTTTGCAGAAGTGGAGGTGAGACATCTTTGCAGGGGTTGGCCTGTTGACAGGAAGCCTATTGAGTTTACAAAATGGTGGCATGGTGTAATGTTGTAATATTTTGCTACTCACTTCAGTTTGCAGTTAATGAGTTTTGGAGTAATCATAGCATTAGCCAAATGTTTTCTGACATAGCAAAGGTCTCCAAGGTCTCAGGCTCTCAGCTTACCATGGCAGACCTGGTCTTACTGATTGTGCACTATTTCCTCATAGATATTCCCCTTCTAGCAGTAATAGCATAATTCCCTTCTTTCTGTGGAATTTCGTATGTTCAAATTATTTCAATATTGCCTCAGTTTTATACTTTGCTGGTGTTAATTGCTACTGAACTACTGATAATATTGGAAAACCTGGCCTTATATGGAATTACTGAAGTACCTTCCCTTCGATCTCAGTTTACCATGGGAGACCTGGCCTTACTAGATTGTGTACTAGTTTCTGGTCATAGATGTTCCCCTTTTATGGGCAGTACCTTACTAATAATCCCTTTTCTTTCCTTTTGACACTGACAGTCTTTAAATTACTTCAATACTAACGAATTTGCTAGTGCTAATTGGTACTGACAATGTTGGAAAACCGCAGCAGTAATTGGTGTGGCATGTTCTGCCTGAGATGTTCAGTTAATAACGTTGTTCCAGTCTACTTTGTTACACTCAGATTGCCTTTTTGTTTGTTTTACTTTAGGTAGTACTTCAGTTTGCAAAAGACGATGATATTGGATTTGGTGGAAGTCACTCGGCACAAGTGCTGCTGTCAAGAGACAGGAAGCTGACCCCTGTACAATGTAAAGTCATTGCTGCCATGCACAGGAATCCTGTGCATATATGATCCAAGATGCAACACTTTCGCACAAGCGGAGATCAGGATTCAGGAGATAAGTTCAGCTTACTGAAGACCTGCTGAGTTCAGCTTGAAGTTGACAAGTTTTGCAGAAATAGCTGACTCTTTTTTCACATTGGAGCCTGTGAAACTGTTGTAAATTCTTGATGACGCTAGATCTTTTTGTTTTGTATATTCTTCAGTAAATGTAAATATAATGTAAGATGCACTTTTAAGTACGAATCCTGATATAAGGGGCACAGCAGCTCTGTTTTGCAGCTGCTAGTATGGTGGTCATGTAAATCGATGCAAGAAAAGCACCAGGGTGTCAGTGGCACTCGTGCTATAGTTGACATTTGCAGTTTAATAAAAAGATGAAA] consensusID : consensus_3760#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [AGAAAATGGCGATTACCCCCGTCGATTCCCCCTCCCCTCCATCTCCGATCAGCAGAGCCAACCTGCACTTCTCCCGCCTCCTCGCGCTCCCGGCCGGTGACGGCGAGCTGGCTCTCGGTGTTAACACGGCGACCCTCATCCTATCATCCTCCTGTGTGTGCGGCCTCCTTGCGAGCAGGTCTGGAGCGGCGGCGCGCGCGGCCGGCCCCCCATCTCGGTCCTCGAATCGAATCGGAGATAGTACTTCAGTTTGGAAAAATGTCAGGAGATTAAAATTGGTGGAAGCCACTTGGCGCAAGAATAAGTAAAAGATTTGGGCATCATTGCATCAAGCCGAACAAAAAGGTCTATAAAACATCAAACACATTCTGTGTGTTGAGCACAATGGTCAAACGACTGGAACAAAGGAAAAAAAAACCGACAATTCGACCTAAGCTACTGACAGAAACTAAGGAATCACACTACTAAATGAGGT] [+] EMBL CF303365 [AGAAAATGGCGATTACCCCCGTCGATTCCCCCTCCCCTCCATCTCCGATCAGCAGAGCCAACCTGCACTTCTCCCGCCTCCTCGCGCTCCCGGCCGGTGACGGCGAGCTGGCTCTCGGTGTTAACACGGCGACCCTCATCCTATCATCCTCCTGTGTGTGCGGCCTCCTTGCGAGCAGGTCTGGAGCGGCGGCGCGCGCGGCCGGCCCCCCATCTCGGTCCTCGAATCGAATCGGAGATAGTACTTCAGTTTGGAAAAATGTCAGGAGATTAAAATTGGTGGAAGCCACTTGGCGCAAGAATAAGTAAAAGATTTGGGCATCATTGCATCAAGCCGAACAAAAAGGTCTATAAAACATCAAACACATTCTGTGTGTTGAGCACAATGGTCAAACGACTGGAACAAAGGAAAAAAAAACCGACAATTCGACCTAAGCTACTGACAGAAACTAAGGAATCACACTACTAAATGAGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3760#0 AAGAAGAAGAAGAAGAGAGAAAATGGCGATTACCCCCGTCGATTCCCCCTCCCCTCCATC 60 consensus_3760#1 -----------------AGAAAATGGCGATTACCCCCGTCGATTCCCCCTCCCCTCCATC 43 ******************************************* consensus_3760#0 TCCGATCAGCAGAGCCAACCTGCACTTCTCCCGCCTCCTCGCGCTCCCGGCCGGTGACGG 120 consensus_3760#1 TCCGATCAGCAGAGCCAACCTGCACTTCTCCCGCCTCCTCGCGCTCCCGGCCGGTGACGG 103 ************************************************************ consensus_3760#0 CGAGCTGGCTCTCGGTGTTAACACGGCGACCCCCCACCCTAGCATCCTCCTGTGTGTGCG 180 consensus_3760#1 CGAGCTGGCTCTCGGTGTTAACACGGCGACCCTC-ATCCTATCATCCTCCTGTGTGTGCG 162 ******************************** * * **** ****************** consensus_3760#0 GCCTCCTTGCGAGCAGGTCTGGAGCGGCGGCGCGCGCGGCCGGCCCCCCATCTCGGTCCT 240 consensus_3760#1 GCCTCCTTGCGAGCAGGTCTGGAGCGGCGGCGCGCGCGGCCGGCCCCCCATCTCGGTCCT 222 ************************************************************ consensus_3760#0 CGAATCGAATCGGAGATAGTACTTCAGTTTGGAAAAATGTCAGGAGATTAAAATTGGTGG 300 consensus_3760#1 CGAATCGAATCGGAGATAGTACTTCAGTTTGGAAAAATGTCAGGAGATTAAAATTGGTGG 282 ************************************************************ consensus_3760#0 AAGCCACTTGGCGCAAGTGCTACTCTTCACTCTTCAGTCACTGAATAATGAAGTATCCCT 360 consensus_3760#1 AAGCCACTTGGCGCAAG------------------------------------------- 299 ***************** consensus_3760#0 GTACAATGAAAAGGTATTTCTGGCATTTTATGATGAGAGGATAATCACCTTTTTTCAGGA 420 consensus_3760#1 -----------------------------------------------------------A 300 * consensus_3760#0 ATAAGTAAAAGATTTGGGCATCATTGCATCAAGCCGAACAAAAAGGTTTATAAAACATCA 480 consensus_3760#1 ATAAGTAAAAGATTTGGGCATCATTGCATCAAGCCGAACAAAAAGGTCTATAAAACATCA 360 *********************************************** ************ consensus_3760#0 AACACATCCTGTGTGTTGAGCACAATGGTCAAACGACTGGAACAAAGGAAAAAAAAACCG 540 consensus_3760#1 AACACATTCTGTGTGTTGAGCACAATGGTCAAACGACTGGAACAAAGGAAAAAAAAACCG 420 ******* **************************************************** consensus_3760#0 ACAATTCGACCTAAGCTACTGACAGAAACTAAGGAATCAGACTACTAAATGAGGCAAGCT 600 consensus_3760#1 ACAATTCGACCTAAGCTACTGACAGAAACTAAGGAATCACACTACTAAATGAGGT----- 475 *************************************** ************** consensus_3760#0 CTTACTGTGCGACCCACTAATTCGCTTCTTCTGCAATTGACGCAATGATCCAAGAACAAG 660 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 CACTTTTGCAGAAGTGGAGGTGAGACATCTTTGCAGGGGTTGGCCTGTTGACAGGAAGCC 720 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 TATTGAGTTTACAAAATGGTGGCATGGTGTAATGTTGTAATATTTTGCTACTCACTTCAG 780 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 TTTGCAGTTAATGAGTTTTGGAGTAATCATAGCATTAGCCAAATGTTTTCTGACATAGCA 840 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 AAGGTCTCCAAGGTCTCAGGCTCTCAGCTTACCATGGCAGACCTGGTCTTACTGATTGTG 900 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 CACTATTTCCTCATAGATATTCCCCTTCTAGCAGTAATAGCATAATTCCCTTCTTTCTGT 960 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 GGAATTTCGTATGTTCAAATTATTTCAATATTGCCTCAGTTTTATACTTTGCTGGTGTTA 1020 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 ATTGCTACTGAACTACTGATAATATTGGAAAACCTGGCCTTATATGGAATTACTGAAGTA 1080 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 CCTTCCCTTCGATCTCAGTTTACCATGGGAGACCTGGCCTTACTAGATTGTGTACTAGTT 1140 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 TCTGGTCATAGATGTTCCCCTTTTATGGGCAGTACCTTACTAATAATCCCTTTTCTTTCC 1200 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 TTTTGACACTGACAGTCTTTAAATTACTTCAATACTAACGAATTTGCTAGTGCTAATTGG 1260 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 TACTGACAATGTTGGAAAACCGCAGCAGTAATTGGTGTGGCATGTTCTGCCTGAGATGTT 1320 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 CAGTTAATAACGTTGTTCCAGTCTACTTTGTTACACTCAGATTGCCTTTTTGTTTGTTTT 1380 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 ACTTTAGGTAGTACTTCAGTTTGCAAAAGACGATGATATTGGATTTGGTGGAAGTCACTC 1440 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 GGCACAAGTGCTGCTGTCAAGAGACAGGAAGCTGACCCCTGTACAATGTAAAGTCATTGC 1500 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 TGCCATGCACAGGAATCCTGTGCATATATGATCCAAGATGCAACACTTTCGCACAAGCGG 1560 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 AGATCAGGATTCAGGAGATAAGTTCAGCTTACTGAAGACCTGCTGAGTTCAGCTTGAAGT 1620 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 TGACAAGTTTTGCAGAAATAGCTGACTCTTTTTTCACATTGGAGCCTGTGAAACTGTTGT 1680 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 AAATTCTTGATGACGCTAGATCTTTTTGTTTTGTATATTCTTCAGTAAATGTAAATATAA 1740 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 TGTAAGATGCACTTTTAAGTACGAATCCTGATATAAGGGGCACAGCAGCTCTGTTTTGCA 1800 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 GCTGCTAGTATGGTGGTCATGTAAATCGATGCAAGAAAAGCACCAGGGTGTCAGTGGCAC 1860 consensus_3760#1 ------------------------------------------------------------ consensus_3760#0 TCGTGCTATAGTTGACATTTGCAGTTTAATAAAAAGATGAAA 1902 consensus_3760#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||