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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1147 fasta sequence
[CATATCAATGGATCAGAGGATTGAGCACTCCTACCTGCCCATCAGAGGCCTGAAGCTTCACATAGCTCACATTGGAAAAGGTGAAGCTGCAACTCTGCTCTTCGTTCATGGCTTCCCTGAGGTGTGGTACTCATGGAGGCACCAGATGATTGCAGCAGCAGCAGCCGGGTTCCGTGCTATTGCACTTGATTTCCCAGGCTATGGCCTCTCGGAGCCACCGGCTGACCTAACACAGGCGTCATGGCAGGGCCTGATGAATGACCTCTTGGCCATTCTAGACTCGCTGTCGATTCCCAAGGTGTTCCTTGTTGCAAAGGATTTTGGAGTCAAACCAGCATATGATCTTGCCCTCTGCCATCCGGACCGCGTATGTGGTATTGTGAGCTTAGGTGTGCCACCTCTTGTGGAAAGCCTCAGTTTCAGTGGACTTCCTGAGGGATTTTACATACACAGATGGAGGGAACCTGGGAGAGCAGAGGCGGATTTTGGCCGATTCGACACGAGGAGGATCTTGCGCACAATCTACATCCTCTTCTCCAGGAGTGAGATTCCAGTTGCCAAGCAAGGACAAGAGATCATGGACCTTGCAGATGAATCAACACCGATGCCTCAGTGGTTCACCGAAGAAGACCTCTCAGCTTACACCGACCTGTATGAGAAATCAGGTCTCATGACTGCTATCCAAATTCCATATAGGACCAAGGCTGCAAAAGCAGAAGGTGCTAATCCAAGGTTTGAAATGCCAATGTTTGTGATTATGGGTCAGAAAGACTACATCCTCAAGTTTCCAGCACTGAAGGAATATATGTCAAGTGAAAAACTGAAAGAAATTGCTCCAGACTACGGGATCACTTACATCCCAGAAGGATCCCATTTTGTTCAGGAACAATTCCCTGACCTGGTGAATCAGCTTGTGATAGACTTCGTCAGTAAACATGCATGAGATAGCAACAAAAACAAGGTGCAATTTGACAAATCCCCAGACTGCAAAAGGTAACAGTTGAGCACTGCGTTCACTGATGTGCACCACTAAAGAGTTGACGTTGTAACGTCGTGCTCATGATGGTATCGCAAACTATTTTAGTGTTGTATAAATAAATGTGCAACTGAAGAAAATTATCCTCTTTTTTTCAGATTTAATACTACA]
[+] EMBL AK071470 [CATATCAATGGATCAGAGGATTGAGCACTCCTACCTGCCCATCAGAGGCCTGAAGCTTCACATAGCTCACATTGGAAAAGGTGAAGCTGCAACTCTGCTCTTCGTTCATGGCTTCCCTGAGGTGTGGTACTCATGGAGGCACCAGATGATTGCAGCAGCAGCAGCCGGGTTCCGTGCTATTGCACTTGATTTCCCAGGCTATGGCCTCTCGGAGCCACCGGCTGACCTAACACAGGCGTCATGGCAGGGCCTGATGAATGACCTCTTGGCCATTCTAGACTCGCTGTCGATTCCCAAGGTGTTCCTTGTTGCAAAGGATTTTGGAGTCAAACCAGCATATGATCTTGCCCTCTGCCATCCGGACCGCGTATGTGGTATTGTGAGCTTAGGTGTGCCACCTCTTGTGGAAAGCCTCAGTTTCAGTGGACTTCCTGAGGGATTTTACATACACAGATGGAGGGAACCTGGGAGAGCAGAGGCGGATTTTGGCCGATTCGACACGAGGAGGATCTTGCGCACAATCTACATCCTCTTCTCCAGGAGTGAGATTCCAGTTGCCAAGCAAGGACAAGAGATCATGGACCTTGCAGATGAATCAACACCGATGCCTCAGTGGTTCACCGAAGAAGACCTCTCAGCTTACACCGACCTGTATGAGAAATCAGGTCTCATGACTGCTATCCAAATTCCATATAGGACCAAGGCTGCAAAAGCAGAAGGTGCTAATCCAAGGTTTGAAATGCCAATGTTTGTGATTATGGGTCAGAAAGACTACATCCTCAAGTTTCCAGCACTGAAGGAATATATGTCAAGTGAAAAACTGAAAGAAATTGCTCCAGACTACGGGATCACTTACATCCCAGAAGGATCCCATTTTGTTCAGGAACAATTCCCTGACCTGGTGAATCAGCTTGTGATAGACTTCGTCAGTAAACATGCATGAGATAGCAACAAAAACAAGGTGCAATTTGACAAATCCCCAGACTGCAAAAGGTAACAGTTGAGCACTGCGTTCACTGATGTGCACCACTAAAGAGTTGACGTTGTAACGTCGTGCTCATGATGGTATCGCAAACTATTTTAGTGTTGTATAAATAAATGTGCAACTGAAGAAAATTATCCTCTTTTTTTCAGATTTAATACTACA]
consensusID : consensus_3771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence
[TTTAATATAGACCATGAAAATTCAGTAACGTTATTTGACTGATGAACGTACAGAGGGAATCTTTTTCAGTTAACATTTTGCAGCGTTGCTTGGAGTATTAAAATACAGACAGCAGAAGACATCAGCATCTTGTCTCTGGCTACCACAAACTGACAAAAACAGCAGAAGACATCAGCAGAAGATGCTTCACACAAAGTGTGCGCATCTTTGTGCCATCCATCCGTTACTAGCCTGACCAAAAGTTCGGCCCATAAATTGCTATAATCCTATATAATCTCAAGCAAATCAGACTGACGTTGGAGAGAACATATCAATGGATCAGAGGATTGAGCACTCCTACCTGCCCATCAGAGGCCTGAAGCTTCACATAGCTCACATTGGAAAAGGTCTGAATCTTACCTCATTTTTGTTGACATCAGCATCTCTCTGCTTTTTTTTGCTCTTCCGAAAGAATGCAGCTCAGCTTCTTGATTTGGTTATTCCAGGTGAAGCTGCAACTCTGCTCTTCGTTCATGGCTTCCCTGAGGTGTGGTACTCATGGAGGCACCAGATGATTGCAGCAGCAGCAGCCGGGTTCCGTGCTATTGCACTTGATTTCCCAGGCTATGGCCTCTCGGAGCCACCGGCTGACCTACACAG]
[+] EMBL CF303570 [TTTAATATAGACCATGAAAATTCAGTAACGTTATTTGACTGATGAACGTACAGAGGGAATCTTTTTCAGTTAACATTTTGCAGCGTTGCTTGGAGTATTAAAATACAGACAGCAGAAGACATCAGCATCTTGTCTCTGGCTACCACAAACTGACAAAAACAGCAGAAGACATCAGCAGAAGATGCTTCACACAAAGTGTGCGCATCTTTGTGCCATCCATCCGTTACTAGCCTGACCAAAAGTTCGGCCCATAAATTGCTATAATCCTATATAATCTCAAGCAAATCAGACTGACGTTGGAGAGAACATATCAATGGATCAGAGGATTGAGCACTCCTACCTGCCCATCAGAGGCCTGAAGCTTCACATAGCTCACATTGGAAAAGGTCTGAATCTTACCTCATTTTTGTTGACATCAGCATCTCTCTGCTTTTTTTTGCTCTTCCGAAAGAATGCAGCTCAGCTTCTTGATTTGGTTATTCCAGGTGAAGCTGCAACTCTGCTCTTCGTTCATGGCTTCCCTGAGGTGTGGTACTCATGGAGGCACCAGATGATTGCAGCAGCAGCAGCCGGGTTCCGTGCTATTGCACTTGATTTCCCAGGCTATGGCCTCTCGGAGCCACCGGCTGACCTACACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3771#0 CATATCAATGGATCAGAGGATTGAGCACTCCTACCTGCCCATCAGAGGCCTGAAGCTTCA 60
consensus_3771#1 ------------------------------------------------------------
consensus_3771#0 CATAGCTCACATTGGAAAAGGTGAAGCTGCAACTCTGCTCTTCGTTCATGGCTTCCCTGA 120
consensus_3771#1 ------------------------------------------------------------
consensus_3771#0 GGTGTGGTACTCATGGAGGCACCAGATGATTGCAGCAGCAGCAGCCGGGTTCCGTGCTAT 180
consensus_3771#1 ------------------------------------------------------------
consensus_3771#0 TGCACTTGATTTCCCAGGCTATGGCCTCTCGGAGCCACCGGCTGACCTAACACAGGCGTC 240
consensus_3771#1 ------------------------------------------------------------
consensus_3771#0 ATGGCAGGGCCTGATGAATGACCTCTTGGCCATTCTAGACTCGCTGTCGATTCCCAAGGT 300
consensus_3771#1 ------------------------------------------------------------
consensus_3771#0 GTTCCTTGTTGCAAAGGATTTTGGAGTCAAACCAGCATATGATCTTGCCCTCTGCCATCC 360
consensus_3771#1 ------------------------------------------------------------
consensus_3771#0 GGACCGCGTATGTGGTATTGTGAGCTTAGGTGTGCCACCTCTTGTGGAAAGCCTCAGT-T 419
consensus_3771#1 ---------------------------------------TTTAATATAGACCATGAAAAT 21
* * * * * * * * *
consensus_3771#0 TCAGTGGACTTCCTGAGGGATTTTACATACACAGATGGAGGGAACCTGGGAGAGCAGAGG 479
consensus_3771#1 TCAGTAACGTTATTTGACTGATGAACGTACA------GAGGGAATCTTTTTCAGTTAACA 75
***** ** * * ** **** ******* ** ** *
consensus_3771#0 CGGATTTTGGCCGATTCGACACGAGGAGGATCTTGCGCACAATCTACATCCTCTTCTCCA 539
consensus_3771#1 -----TTTTGCAGCGTTGCTTGGAGTATTAAAATACAGACAGCAGAAGACATCAGCATCT 130
*** ** * * * *** * * * * *** * * ** * *
consensus_3771#0 GGAGTGAGATTCCAGTTGCCAAGCAAGGACAAGAGATCATGGACCTTGCAGATGAATCAA 599
consensus_3771#1 TGTCTCTGGCTACCACAAACTGACAAAAACAGCAGAAGACATCAGCAGAAGATGCTTCA- 189
* * * * * * *** *** *** * * ***** ***
consensus_3771#0 CACCGATGCCTCAGTGGTTCACCGAAGAAGACCTCTCAGCTTACACCGACCTGTATGAGA 659
consensus_3771#1 CACAAA---GTGTGCGCATCTTTGTG-----CCATCCATCCGTTACTAGCCTG-ACCAAA 240
*** * * * * ** * ** ** * ** **** * * *
consensus_3771#0 AATCAGGTCTCATGACTGCTATCCAAATTCCATATAGGACCAAGGCTGCAAAAGCAGAAG 719
consensus_3771#1 AGTTCGGCCCATAAATTGCTAT---AATCCTATATAATCTCAAGC-----AAATCAGA-- 290
* * ** * * ****** *** * ***** **** *** ****
consensus_3771#0 GTGCTAATCCAAGGTTTGAAATGCCAATGTTTGTGATTATGGGTCAGAAAGACTACATCC 779
consensus_3771#1 ---CTGACGTTGGAGAGAACATATCAATGGATCAGAGGATTG---AGCACTCCTACCTGC 344
** * * * ** ***** * ** ** * ** * **** * *
consensus_3771#0 TCAAGTTTCCAGCACTGAAGGAATATATGTCAAGTGAAAAACTGAAAGAAATTGCTCCAG 839
consensus_3771#1 CCA---TCAGAGGCCTGAAGCTTCACAT----AGCTCACATTGGAAAAGGTCTGAATCTT 397
** * ** ****** * ** ** * * **** ** *
consensus_3771#0 ACTACGGGATCACTTACATCCCAGAAGGATCCCATTTTGTTCAGGAACAATTCCCTGACC 899
consensus_3771#1 ACCTCATTTTTGTTGACATC-----AGCATCTCTCTGCTTTTTTTTGCTCTTCCGAAAGA 452
** * * * ***** ** *** * * ** * **** *
consensus_3771#0 TGGTGAATCAGCTTGTGATAGACTTCGTCAGTAAACATGCATGAGATAGCAACAAAAACA 959
consensus_3771#1 ATGCAGCTCAGCTTCT---TGATTTGGTTATTCCAGGT----GAAGCTGCAAC-----TC 500
* ******* * ** ** ** * * * * ** *****
consensus_3771#0 AGGTGCAATTTGACAAATCCCCAGACTGCAAAAGGTAACAGTTGAGCACTGCGTTCACTG 1019
consensus_3771#1 TGCTCTTCGTTCATGGCTTCCCTGAG---GTGTGGTACTCATGGAG----GCACCAGATG 553
* * ** * * *** ** **** * *** ** **
consensus_3771#0 ATGTGCACCACTAAAGAGTTGACGTTGTAACGTCGTGCTCATGATGGTATCGCAAACTAT 1079
consensus_3771#1 AT-TGCAGCAGCAGCAGCCGGGTTCCGTGCTATTGCACT-----TGATTTCCCAGGCTAT 607
** **** ** * * ** * * ** ** * ** ** ****
consensus_3771#0 TTTAGTGTTGTATAAATAAATGTGCAACTGAAGAAAATTATCCTCTTTTTTTCAGATTTA 1139
consensus_3771#1 GGCCTCTCGGAGCCACCGGCTGACCTACACAG---------------------------- 639
* * ** * ** *
consensus_3771#0 ATACTACA 1147
consensus_3771#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||