These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3773#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1559 fasta sequence [GAATATTGGCAGATTCATGATGAGATCGATGGGTGATGGAAGAGAAGGGAAGGCATTATTGAGTGCAGCGTTGATGAACCTGCCGGCCGGCTAAATTAATTAGCAAGAAAGTCTGAAACTGGCTCAAAGGTTCACCAGCACTGCACCCAATCACGCCTTTGCTCTCTCTGAGGGGAAATTAATTAGTTTGTGCTAGTTCATCAGATGCACACACAATCCATATCCATATCCATAAATCTTATAGTACTATTAGTTTTCAATTCTCATTGTAGATTCGACAAAGTTCATATGAGAACCAGGGGATGGATGCAGGGATGCATTTGGTAAGTTAGCTCTCTTCACTCTCACAAGATGCGTTCTTGTCCCAGGTTTGTAGCTTTATCACATCCCTTCTTGTCTTCAAATACTGTCATCTCGATTTGGTAATTAGACATGACAAAACTGAAATTAAGGCGCTCTTGACTTGATTAGTACTCCTTTCACCTCAAAACATAAACATAAGACGTAACTATTTTTTCAGATGTCTTATAATACAAGCATGTATATATCCATGCAATTAACTAACATATTCTCTTTCTCTTTAATTTGGTTTTTTAAGTCCAGTCTCAAGATCTCAAGATGGTACTGATTTTTTTTTCCAAAATTAGTAAATGAGAAAATGGAGGGCTACAAGGACTCCAGTCTACTCTCGTACGAAGTTGATTTTATTTTCGGAACAGAGGGAATAGGAGGCTAGCTAGATCTCCATGCATAAGGATGAAGATACATGTAAGCGGCAGAACATTTTCACAAACGGGTCGAATCTGCACGAAACTGAACATGCAGATCACAGAGACGGAGGATGGAGCAATCAAGCAAGCGATCGATCGAGATGCAACACAGCTAAAAGAGAAGAGAAGAGCACTACACTGCACAGAGATCAGAGGAAGACGACGAGACGAGTGGCATATGTTCTTCAGGAAGATGTGAGATGAGTATATATAATATAAATCAGTTGGGGCCCCAGCAGACGAGGTGGTGGACCTTGCGCAGCCTCACGTCGGCGGCCTCCTCCGCCGGCGGCCGCGCGGCGGCGGCGGCGGTGTTGGAGAGGGGGGAACGCAGCCTGGGCGAGGAGGCGGCGGCGCGGAGGTAGAGGGAGCGGAGGGCGTAGTCCCAGCGGCAGAGGCCCGCCTGGTCCTTGAGCGCCTCGACGGCGCCCATGCTCGCCGCCACCACCAGCGACGGCGCCGCCGCCTTCGCCCCGCAGATCGCCATCCCGAGTTCCCGACCCGGCTACTCCGCCTCCGCCTCCGCTCGGTCACAGTGCGCGGCGCTTGCGCTTGCTAGTGATGCGGAGGTGGTGGAGGCGTGGTGGTCAGGGGAGACGCCATGTTTTTATACGCGAGATGAGCGGAAAGCGGCGAAACGGGGAGCGCGTCGCCGCCGGTTTTGGACGCTCACTCTGTTTCCAAGGATGCTGGGCGGTGCGAGCCTCACTGCGAGGACACGGGGATTATTGTTTGTTTTCGTCTGTCCAGAAATATAAACAATTTTTAAATAATTGAAATATATTTTAA] [+] EMBL AK109752 [GAATATTGGCAGATTCATGATGAGATCGATGGGTGATGGAAGAGAAGGGAAGGCATTATTGAGTGCAGCGTTGATGAACCTGCCGGCCGGCTAAATTAATTAGCAAGAAAGTCTGAAACTGGCTCAAAGGTTCACCAGCACTGCACCCAATCACGCCTTTGCTCTCTCTGAGGGGAAATTAATTAGTTTGTGCTAGTTCATCAGATGCACACACAATCCATATCCATATCCATAAATCTTATAGTACTATTAGTTTTCAATTCTCATTGTAGATTCGACAAAGTTCATATGAGAACCAGGGGATGGATGCAGGGATGCATTTGGTAAGTTAGCTCTCTTCACTCTCACAAGATGCGTTCTTGTCCCAGGTTTGTAGCTTTATCACATCCCTTCTTGTCTTCAAATACTGTCATCTCGATTTGGTAATTAGACATGACAAAACTGAAATTAAGGCGCTCTTGACTTGATTAGTACTCCTTTCACCTCAAAACATAAACATAAGACGTAACTATTTTTTCAGATGTCTTATAATACAAGCATGTATATATCCATGCAATTAACTAACATATTCTCTTTCTCTTTAATTTGGTTTTTTAAGTCCAGTCTCAAGATCTCAAGATGGTACTGATTTTTTTTTCCAAAATTAGTAAATGAGAAAATGGAGGGCTACAAGGACTCCAGTCTACTCTCGTACGAAGTTGATTTTATTTTCGGAACAGAGGGAATAGGAGGCTAGCTAGATCTCCATGCATAAGGATGAAGATACATGTAAGCGGCAGAACATTTTCACAAACGGGTCGAATCTGCACGAAACTGAACATGCAGATCACAGAGACGGAGGATGGAGCAATCAAGCAAGCGATCGATCGAGATGCAACACAGCTAAAAGAGAAGAGAAGAGCACTACACTGCACAGAGATCAGAGGAAGACGACGAGACGAGTGGCATATGTTCTTCAGGAAGATGTGAGATGAGTATATATAATATAAATCAGTTGGGGCCCCAGCAGACGAGGTGGTGGACCTTGCGCAGCCTCACGTCGGCGGCCTCCTCCGCCGGCGGCCGCGCGGCGGCGGCGGCGGTGTTGGAGAGGGGGGAACGCAGCCTGGGCGAGGAGGCGGCGGCGCGGAGGTAGAGGGAGCGGAGGGCGTAGTCCCAGCGGCAGAGGCCCGCCTGGTCCTTGAGCGCCTCGACGGCGCCCATGCTCGCCGCCACCACCAGCGACGGCGCCGCCGCCTTCGCCCCGCAGATCGCCATCCCGAGTTCCCGACCCGGCTACTCCGCCTCCGCCTCCGCTCGGTCACAGTGCGCGGCGCTTGCGCTTGCTAGTGATGCGGAGGTGGTGGAGGCGTGGTGGTCAGGGGAGACGCCATGTTTTTATACGCGAGATGAGCGGAAAGCGGCGAAACGGGGAGCGCGTCGCCGCCGGTTTTGGACGCTCACTCTGTTTCCAAGGATGCTGGGCGGTGCGAGCCTCACTGCGAGGACACGGGGATTATTGTTTGTTTTCGTCTGTCCAGAAATATAAACAATTTTTAAATAATTGAAATATATTTTAA] consensusID : consensus_3773#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence [GCGGAGNTAGANGGANCGNAGGTCGTAGTCCCANGCGTNANAGGCCCGNCTGGTCCCTTGCACNCTCNACGGCGCNCATGCTCGNCGNCACCANANATGGACGGCGCCGCCGCCTTCGCCCCGCAGANCGCCATCCCGAGTTCNCGACCCGNCTACTNCGCCNGCGCCTNCGCTCGGTCACAGTGCGCTGCCNTTGCGNTTGCTAG] [-] EMBL OSC20851 [GCGGAGNTAGANGGANCGNAGGTCGTAGTCCCANGCGTNANAGGCCCGNCTGGTCCCTTGCACNCTCNACGGCGCNCATGCTCGNCGNCACCANANATGGACGGCGCCGCCGCCTTCGCCCCGCAGANCGCCATCCCGAGTTCNCGACCCGNCTACTNCGCCNGCGCCTNCGCTCGGTCACAGTGCGCTGCCNTTGCGNTTGCTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3773#0 GAATATTGGCAGATTCATGATGAGATCGATGGGTGATGGAAGAGAAGGGAAGGCATTATT 60 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 GAGTGCAGCGTTGATGAACCTGCCGGCCGGCTAAATTAATTAGCAAGAAAGTCTGAAACT 120 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 GGCTCAAAGGTTCACCAGCACTGCACCCAATCACGCCTTTGCTCTCTCTGAGGGGAAATT 180 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 AATTAGTTTGTGCTAGTTCATCAGATGCACACACAATCCATATCCATATCCATAAATCTT 240 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 ATAGTACTATTAGTTTTCAATTCTCATTGTAGATTCGACAAAGTTCATATGAGAACCAGG 300 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 GGATGGATGCAGGGATGCATTTGGTAAGTTAGCTCTCTTCACTCTCACAAGATGCGTTCT 360 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 TGTCCCAGGTTTGTAGCTTTATCACATCCCTTCTTGTCTTCAAATACTGTCATCTCGATT 420 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 TGGTAATTAGACATGACAAAACTGAAATTAAGGCGCTCTTGACTTGATTAGTACTCCTTT 480 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 CACCTCAAAACATAAACATAAGACGTAACTATTTTTTCAGATGTCTTATAATACAAGCAT 540 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 GTATATATCCATGCAATTAACTAACATATTCTCTTTCTCTTTAATTTGGTTTTTTAAGTC 600 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 CAGTCTCAAGATCTCAAGATGGTACTGATTTTTTTTTCCAAAATTAGTAAATGAGAAAAT 660 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 GGAGGGCTACAAGGACTCCAGTCTACTCTCGTACGAAGTTGATTTTATTTTCGGAACAGA 720 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 GGGAATAGGAGGCTAGCTAGATCTCCATGCATAAGGATGAAGATACATGTAAGCGGCAGA 780 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 ACATTTTCACAAACGGGTCGAATCTGCACGAAACTGAACATGCAGATCACAGAGACGGAG 840 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 GATGGAGCAATCAAGCAAGCGATCGATCGAGATGCAACACAGCTAAAAGAGAAGAGAAGA 900 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 GCACTACACTGCACAGAGATCAGAGGAAGACGACGAGACGAGTGGCATATGTTCTTCAGG 960 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 AAGATGTGAGATGAGTATATATAATATAAATCAGTTGGGGCCCCAGCAGACGAGGTGGTG 1020 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 GACCTTGCGCAGCCTCACGTCGGCGGCCTCCTCCGCCGGCGGCCGCGCGGCGGCGGCGGC 1080 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 GGTGTTGGAGAGGGGGGAACGCAGCCTGGGCGAGGAGGCGGCGGCGCGGAGGTAGAGGGA 1140 consensus_3773#1 ---------------------------------------------GCGGAGNTAGANGGA 15 ****** **** *** consensus_3773#0 GCGGAGGGCGTAGTCCCAG-CGGCAGAGGCCCGCCTGGTCCTTGAGCGCCTCGACGGCGC 1199 consensus_3773#1 NCGNAGGTCGTAGTCCCANGCGTNANAGGCCCGNCTGGTCCCTTGCACNCTCNACGGCGC 75 ** *** ********** ** * ******* ******* * *** ******* consensus_3773#0 CCATGCTCGCCGCCACCACCAGCG-ACGGCGCCGCCGCCTTCGCCCCGCAGATCGCCATC 1258 consensus_3773#1 NCATGCTCGNCGNCACCANANATGGACGGCGCCGCCGCCTTCGCCCCGCAGANCGCCATC 135 ******** ** ***** * *************************** ******* consensus_3773#0 CCGAGTTCCCGACCCGGCTACTCCGCCTCCGCCTCCGCTCGGTCACAGTGCGCGGCGCTT 1318 consensus_3773#1 CCGAGTTCNCGACCCGNCTACTNCGCCNGCGCCTNCGCTCGGTCACAGTGCGCTGCCNTT 195 ******** ******* ***** **** ***** ****************** ** ** consensus_3773#0 GCGCTTGCTAGTGATGCGGAGGTGGTGGAGGCGTGGTGGTCAGGGGAGACGCCATGTTTT 1378 consensus_3773#1 GCGNTTGCTAG------------------------------------------------- 206 *** ******* consensus_3773#0 TATACGCGAGATGAGCGGAAAGCGGCGAAACGGGGAGCGCGTCGCCGCCGGTTTTGGACG 1438 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 CTCACTCTGTTTCCAAGGATGCTGGGCGGTGCGAGCCTCACTGCGAGGACACGGGGATTA 1498 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 TTGTTTGTTTTCGTCTGTCCAGAAATATAAACAATTTTTAAATAATTGAAATATATTTTA 1558 consensus_3773#1 ------------------------------------------------------------ consensus_3773#0 A 1559 consensus_3773#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||