cluster # 3773

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3773 cluster # 3773 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3773#0 length = 1559 sequences # 1

consensus_3773#1 length = 206 sequences # 1

consensusID : consensus_3773#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1559
fasta sequence

                              [GAATATTGGCAGATTCATGATGAGATCGATGGGTGATGGAAGAGAAGGGAAGGCATTATTGAGTGCAGCGTTGATGAACCTGCCGGCCGGCTAAATTAATTAGCAAGAAAGTCTGAAACTGGCTCAAAGGTTCACCAGCACTGCACCCAATCACGCCTTTGCTCTCTCTGAGGGGAAATTAATTAGTTTGTGCTAGTTCATCAGATGCACACACAATCCATATCCATATCCATAAATCTTATAGTACTATTAGTTTTCAATTCTCATTGTAGATTCGACAAAGTTCATATGAGAACCAGGGGATGGATGCAGGGATGCATTTGGTAAGTTAGCTCTCTTCACTCTCACAAGATGCGTTCTTGTCCCAGGTTTGTAGCTTTATCACATCCCTTCTTGTCTTCAAATACTGTCATCTCGATTTGGTAATTAGACATGACAAAACTGAAATTAAGGCGCTCTTGACTTGATTAGTACTCCTTTCACCTCAAAACATAAACATAAGACGTAACTATTTTTTCAGATGTCTTATAATACAAGCATGTATATATCCATGCAATTAACTAACATATTCTCTTTCTCTTTAATTTGGTTTTTTAAGTCCAGTCTCAAGATCTCAAGATGGTACTGATTTTTTTTTCCAAAATTAGTAAATGAGAAAATGGAGGGCTACAAGGACTCCAGTCTACTCTCGTACGAAGTTGATTTTATTTTCGGAACAGAGGGAATAGGAGGCTAGCTAGATCTCCATGCATAAGGATGAAGATACATGTAAGCGGCAGAACATTTTCACAAACGGGTCGAATCTGCACGAAACTGAACATGCAGATCACAGAGACGGAGGATGGAGCAATCAAGCAAGCGATCGATCGAGATGCAACACAGCTAAAAGAGAAGAGAAGAGCACTACACTGCACAGAGATCAGAGGAAGACGACGAGACGAGTGGCATATGTTCTTCAGGAAGATGTGAGATGAGTATATATAATATAAATCAGTTGGGGCCCCAGCAGACGAGGTGGTGGACCTTGCGCAGCCTCACGTCGGCGGCCTCCTCCGCCGGCGGCCGCGCGGCGGCGGCGGCGGTGTTGGAGAGGGGGGAACGCAGCCTGGGCGAGGAGGCGGCGGCGCGGAGGTAGAGGGAGCGGAGGGCGTAGTCCCAGCGGCAGAGGCCCGCCTGGTCCTTGAGCGCCTCGACGGCGCCCATGCTCGCCGCCACCACCAGCGACGGCGCCGCCGCCTTCGCCCCGCAGATCGCCATCCCGAGTTCCCGACCCGGCTACTCCGCCTCCGCCTCCGCTCGGTCACAGTGCGCGGCGCTTGCGCTTGCTAGTGATGCGGAGGTGGTGGAGGCGTGGTGGTCAGGGGAGACGCCATGTTTTTATACGCGAGATGAGCGGAAAGCGGCGAAACGGGGAGCGCGTCGCCGCCGGTTTTGGACGCTCACTCTGTTTCCAAGGATGCTGGGCGGTGCGAGCCTCACTGCGAGGACACGGGGATTATTGTTTGTTTTCGTCTGTCCAGAAATATAAACAATTTTTAAATAATTGAAATATATTTTAA]

[+] EMBL AK109752             [GAATATTGGCAGATTCATGATGAGATCGATGGGTGATGGAAGAGAAGGGAAGGCATTATTGAGTGCAGCGTTGATGAACCTGCCGGCCGGCTAAATTAATTAGCAAGAAAGTCTGAAACTGGCTCAAAGGTTCACCAGCACTGCACCCAATCACGCCTTTGCTCTCTCTGAGGGGAAATTAATTAGTTTGTGCTAGTTCATCAGATGCACACACAATCCATATCCATATCCATAAATCTTATAGTACTATTAGTTTTCAATTCTCATTGTAGATTCGACAAAGTTCATATGAGAACCAGGGGATGGATGCAGGGATGCATTTGGTAAGTTAGCTCTCTTCACTCTCACAAGATGCGTTCTTGTCCCAGGTTTGTAGCTTTATCACATCCCTTCTTGTCTTCAAATACTGTCATCTCGATTTGGTAATTAGACATGACAAAACTGAAATTAAGGCGCTCTTGACTTGATTAGTACTCCTTTCACCTCAAAACATAAACATAAGACGTAACTATTTTTTCAGATGTCTTATAATACAAGCATGTATATATCCATGCAATTAACTAACATATTCTCTTTCTCTTTAATTTGGTTTTTTAAGTCCAGTCTCAAGATCTCAAGATGGTACTGATTTTTTTTTCCAAAATTAGTAAATGAGAAAATGGAGGGCTACAAGGACTCCAGTCTACTCTCGTACGAAGTTGATTTTATTTTCGGAACAGAGGGAATAGGAGGCTAGCTAGATCTCCATGCATAAGGATGAAGATACATGTAAGCGGCAGAACATTTTCACAAACGGGTCGAATCTGCACGAAACTGAACATGCAGATCACAGAGACGGAGGATGGAGCAATCAAGCAAGCGATCGATCGAGATGCAACACAGCTAAAAGAGAAGAGAAGAGCACTACACTGCACAGAGATCAGAGGAAGACGACGAGACGAGTGGCATATGTTCTTCAGGAAGATGTGAGATGAGTATATATAATATAAATCAGTTGGGGCCCCAGCAGACGAGGTGGTGGACCTTGCGCAGCCTCACGTCGGCGGCCTCCTCCGCCGGCGGCCGCGCGGCGGCGGCGGCGGTGTTGGAGAGGGGGGAACGCAGCCTGGGCGAGGAGGCGGCGGCGCGGAGGTAGAGGGAGCGGAGGGCGTAGTCCCAGCGGCAGAGGCCCGCCTGGTCCTTGAGCGCCTCGACGGCGCCCATGCTCGCCGCCACCACCAGCGACGGCGCCGCCGCCTTCGCCCCGCAGATCGCCATCCCGAGTTCCCGACCCGGCTACTCCGCCTCCGCCTCCGCTCGGTCACAGTGCGCGGCGCTTGCGCTTGCTAGTGATGCGGAGGTGGTGGAGGCGTGGTGGTCAGGGGAGACGCCATGTTTTTATACGCGAGATGAGCGGAAAGCGGCGAAACGGGGAGCGCGTCGCCGCCGGTTTTGGACGCTCACTCTGTTTCCAAGGATGCTGGGCGGTGCGAGCCTCACTGCGAGGACACGGGGATTATTGTTTGTTTTCGTCTGTCCAGAAATATAAACAATTTTTAAATAATTGAAATATATTTTAA]




>consensus_3773#0
GAATATTGGCAGATTCATGATGAGATCGATGGGTGATGGAAGAGAAGGGAAGGCATTATT
GAGTGCAGCGTTGATGAACCTGCCGGCCGGCTAAATTAATTAGCAAGAAAGTCTGAAACT
GGCTCAAAGGTTCACCAGCACTGCACCCAATCACGCCTTTGCTCTCTCTGAGGGGAAATT
AATTAGTTTGTGCTAGTTCATCAGATGCACACACAATCCATATCCATATCCATAAATCTT
ATAGTACTATTAGTTTTCAATTCTCATTGTAGATTCGACAAAGTTCATATGAGAACCAGG
GGATGGATGCAGGGATGCATTTGGTAAGTTAGCTCTCTTCACTCTCACAAGATGCGTTCT
TGTCCCAGGTTTGTAGCTTTATCACATCCCTTCTTGTCTTCAAATACTGTCATCTCGATT
TGGTAATTAGACATGACAAAACTGAAATTAAGGCGCTCTTGACTTGATTAGTACTCCTTT
CACCTCAAAACATAAACATAAGACGTAACTATTTTTTCAGATGTCTTATAATACAAGCAT
GTATATATCCATGCAATTAACTAACATATTCTCTTTCTCTTTAATTTGGTTTTTTAAGTC
CAGTCTCAAGATCTCAAGATGGTACTGATTTTTTTTTCCAAAATTAGTAAATGAGAAAAT
GGAGGGCTACAAGGACTCCAGTCTACTCTCGTACGAAGTTGATTTTATTTTCGGAACAGA
GGGAATAGGAGGCTAGCTAGATCTCCATGCATAAGGATGAAGATACATGTAAGCGGCAGA
ACATTTTCACAAACGGGTCGAATCTGCACGAAACTGAACATGCAGATCACAGAGACGGAG
GATGGAGCAATCAAGCAAGCGATCGATCGAGATGCAACACAGCTAAAAGAGAAGAGAAGA
GCACTACACTGCACAGAGATCAGAGGAAGACGACGAGACGAGTGGCATATGTTCTTCAGG
AAGATGTGAGATGAGTATATATAATATAAATCAGTTGGGGCCCCAGCAGACGAGGTGGTG
GACCTTGCGCAGCCTCACGTCGGCGGCCTCCTCCGCCGGCGGCCGCGCGGCGGCGGCGGC
GGTGTTGGAGAGGGGGGAACGCAGCCTGGGCGAGGAGGCGGCGGCGCGGAGGTAGAGGGA
GCGGAGGGCGTAGTCCCAGCGGCAGAGGCCCGCCTGGTCCTTGAGCGCCTCGACGGCGCC
CATGCTCGCCGCCACCACCAGCGACGGCGCCGCCGCCTTCGCCCCGCAGATCGCCATCCC
GAGTTCCCGACCCGGCTACTCCGCCTCCGCCTCCGCTCGGTCACAGTGCGCGGCGCTTGC
GCTTGCTAGTGATGCGGAGGTGGTGGAGGCGTGGTGGTCAGGGGAGACGCCATGTTTTTA
TACGCGAGATGAGCGGAAAGCGGCGAAACGGGGAGCGCGTCGCCGCCGGTTTTGGACGCT
CACTCTGTTTCCAAGGATGCTGGGCGGTGCGAGCCTCACTGCGAGGACACGGGGATTATT
GTTTGTTTTCGTCTGTCCAGAAATATAAACAATTTTTAAATAATTGAAATATATTTTAA

consensusID : consensus_3773#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [GCGGAGNTAGANGGANCGNAGGTCGTAGTCCCANGCGTNANAGGCCCGNCTGGTCCCTTGCACNCTCNACGGCGCNCATGCTCGNCGNCACCANANATGGACGGCGCCGCCGCCTTCGCCCCGCAGANCGCCATCCCGAGTTCNCGACCCGNCTACTNCGCCNGCGCCTNCGCTCGGTCACAGTGCGCTGCCNTTGCGNTTGCTAG]

[-] EMBL OSC20851             [GCGGAGNTAGANGGANCGNAGGTCGTAGTCCCANGCGTNANAGGCCCGNCTGGTCCCTTGCACNCTCNACGGCGCNCATGCTCGNCGNCACCANANATGGACGGCGCCGCCGCCTTCGCCCCGCAGANCGCCATCCCGAGTTCNCGACCCGNCTACTNCGCCNGCGCCTNCGCTCGGTCACAGTGCGCTGCCNTTGCGNTTGCTAG]




>consensus_3773#1
GCGGAGNTAGANGGANCGNAGGTCGTAGTCCCANGCGTNANAGGCCCGNCTGGTCCCTTG
CACNCTCNACGGCGCNCATGCTCGNCGNCACCANANATGGACGGCGCCGCCGCCTTCGCC
CCGCAGANCGCCATCCCGAGTTCNCGACCCGNCTACTNCGCCNGCGCCTNCGCTCGGTCA
CAGTGCGCTGCCNTTGCGNTTGCTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3773#0      GAATATTGGCAGATTCATGATGAGATCGATGGGTGATGGAAGAGAAGGGAAGGCATTATT 60
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GAGTGCAGCGTTGATGAACCTGCCGGCCGGCTAAATTAATTAGCAAGAAAGTCTGAAACT 120
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GGCTCAAAGGTTCACCAGCACTGCACCCAATCACGCCTTTGCTCTCTCTGAGGGGAAATT 180
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      AATTAGTTTGTGCTAGTTCATCAGATGCACACACAATCCATATCCATATCCATAAATCTT 240
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      ATAGTACTATTAGTTTTCAATTCTCATTGTAGATTCGACAAAGTTCATATGAGAACCAGG 300
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GGATGGATGCAGGGATGCATTTGGTAAGTTAGCTCTCTTCACTCTCACAAGATGCGTTCT 360
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      TGTCCCAGGTTTGTAGCTTTATCACATCCCTTCTTGTCTTCAAATACTGTCATCTCGATT 420
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      TGGTAATTAGACATGACAAAACTGAAATTAAGGCGCTCTTGACTTGATTAGTACTCCTTT 480
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      CACCTCAAAACATAAACATAAGACGTAACTATTTTTTCAGATGTCTTATAATACAAGCAT 540
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GTATATATCCATGCAATTAACTAACATATTCTCTTTCTCTTTAATTTGGTTTTTTAAGTC 600
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      CAGTCTCAAGATCTCAAGATGGTACTGATTTTTTTTTCCAAAATTAGTAAATGAGAAAAT 660
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GGAGGGCTACAAGGACTCCAGTCTACTCTCGTACGAAGTTGATTTTATTTTCGGAACAGA 720
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GGGAATAGGAGGCTAGCTAGATCTCCATGCATAAGGATGAAGATACATGTAAGCGGCAGA 780
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      ACATTTTCACAAACGGGTCGAATCTGCACGAAACTGAACATGCAGATCACAGAGACGGAG 840
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GATGGAGCAATCAAGCAAGCGATCGATCGAGATGCAACACAGCTAAAAGAGAAGAGAAGA 900
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GCACTACACTGCACAGAGATCAGAGGAAGACGACGAGACGAGTGGCATATGTTCTTCAGG 960
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      AAGATGTGAGATGAGTATATATAATATAAATCAGTTGGGGCCCCAGCAGACGAGGTGGTG 1020
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GACCTTGCGCAGCCTCACGTCGGCGGCCTCCTCCGCCGGCGGCCGCGCGGCGGCGGCGGC 1080
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      GGTGTTGGAGAGGGGGGAACGCAGCCTGGGCGAGGAGGCGGCGGCGCGGAGGTAGAGGGA 1140
consensus_3773#1      ---------------------------------------------GCGGAGNTAGANGGA 15
                                                                   ****** **** ***

consensus_3773#0      GCGGAGGGCGTAGTCCCAG-CGGCAGAGGCCCGCCTGGTCCTTGAGCGCCTCGACGGCGC 1199
consensus_3773#1      NCGNAGGTCGTAGTCCCANGCGTNANAGGCCCGNCTGGTCCCTTGCACNCTCNACGGCGC 75
                       ** *** **********  **  * ******* ******* *      *** *******

consensus_3773#0      CCATGCTCGCCGCCACCACCAGCG-ACGGCGCCGCCGCCTTCGCCCCGCAGATCGCCATC 1258
consensus_3773#1      NCATGCTCGNCGNCACCANANATGGACGGCGCCGCCGCCTTCGCCCCGCAGANCGCCATC 135
                       ******** ** *****     * *************************** *******

consensus_3773#0      CCGAGTTCCCGACCCGGCTACTCCGCCTCCGCCTCCGCTCGGTCACAGTGCGCGGCGCTT 1318
consensus_3773#1      CCGAGTTCNCGACCCGNCTACTNCGCCNGCGCCTNCGCTCGGTCACAGTGCGCTGCCNTT 195
                      ******** ******* ***** ****  ***** ****************** **  **

consensus_3773#0      GCGCTTGCTAGTGATGCGGAGGTGGTGGAGGCGTGGTGGTCAGGGGAGACGCCATGTTTT 1378
consensus_3773#1      GCGNTTGCTAG------------------------------------------------- 206
                      *** *******                                                 

consensus_3773#0      TATACGCGAGATGAGCGGAAAGCGGCGAAACGGGGAGCGCGTCGCCGCCGGTTTTGGACG 1438
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      CTCACTCTGTTTCCAAGGATGCTGGGCGGTGCGAGCCTCACTGCGAGGACACGGGGATTA 1498
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      TTGTTTGTTTTCGTCTGTCCAGAAATATAAACAATTTTTAAATAATTGAAATATATTTTA 1558
consensus_3773#1      ------------------------------------------------------------
                                                                                  

consensus_3773#0      A 1559
consensus_3773#1      -