Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 3779 cluster # 3779       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3779#0 length = 997 sequences # 1  
consensus_3779#1 length = 188 sequences # 1  

consensusID : consensus_3779#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 997
fasta sequence
                              [TGCACGGGGAACTCGCCGTCCCGGCCTCACTCGGCCAGCCATGGAGCTCGACCTCCCGCCGAAGCAACAAGCCCCGCCGCTCGCCGACCTCGCCGTTGCCATCCACCGGGCCGCCGAGGCCACCACCGCGCTCTCCGCACCCTCCTCCTCTTCCCAAGCCGCCGCCGCCGCGGTGGTCGCCCTCCGTGACGCCCACGCCGCTATAGGCGGCTTCCTCTATCGCCTCGACGTCTCAGTCCCTGCCTCTTCTTCGTCCAGCGACGATCAGCCGATGGCGGACGGCTGCGAGGAGGAGGGGGAGGGGGAGCAGCAGATGGTAGAGGAGGTGGAGGAGGGTCTCCGGGAGTGCGCCCTGCAGGGGAGCAAGCGGCGGAAGCGGCCTGTGCCGCCGTCGTGGCCCCTAGGGCGCCGCTCGAGTGGCGGTTGCGTGGTGCCGGAGGCCGCGCCGGCTCCTCTGGACGTGGAGGGGCGGCGGCGCGCTGCCATGGATCTCTTGCTACAGTTCCATGGGTAGGATGAGTGCAGGGTTCATTGGCACAATACGAACGAAATGATGAGGCGCCTACTGAATAGTCCATACCAAGTTTGTAGGTCATACACTCGTGCTGTTCTTCACGAAGATATACACAAACATATCAAACAAACCACAAGCAAATAGGTGAAATCACCAACCTTCCCAATACTGAGGCAGCTAGAAATCAACACTTCAGCAGTGAGTGTGAGACAGAGCTAGTATCAAGCAGTACTCATCAACATAATGAGCCACTTAGCCTTACAGATTGTGTTATTTCCCAAAAAATAAAAAGTGAGATGAAAGACTCAGATTTGAGTCCCAAGATTGTTTTGTTTTTCAGTAAATGGGCTGAATCATTTGTCTCCTCAGGCGTTAATTCGTTATCCCCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGTTCCTGGAAGGTATTTATTTTACATCTAATATTTTTTA]

[+] EMBL AK073622             [TGCACGGGGAACTCGCCGTCCCGGCCTCACTCGGCCAGCCATGGAGCTCGACCTCCCGCCGAAGCAACAAGCCCCGCCGCTCGCCGACCTCGCCGTTGCCATCCACCGGGCCGCCGAGGCCACCACCGCGCTCTCCGCACCCTCCTCCTCTTCCCAAGCCGCCGCCGCCGCGGTGGTCGCCCTCCGTGACGCCCACGCCGCTATAGGCGGCTTCCTCTATCGCCTCGACGTCTCAGTCCCTGCCTCTTCTTCGTCCAGCGACGATCAGCCGATGGCGGACGGCTGCGAGGAGGAGGGGGAGGGGGAGCAGCAGATGGTAGAGGAGGTGGAGGAGGGTCTCCGGGAGTGCGCCCTGCAGGGGAGCAAGCGGCGGAAGCGGCCTGTGCCGCCGTCGTGGCCCCTAGGGCGCCGCTCGAGTGGCGGTTGCGTGGTGCCGGAGGCCGCGCCGGCTCCTCTGGACGTGGAGGGGCGGCGGCGCGCTGCCATGGATCTCTTGCTACAGTTCCATGGGTAGGATGAGTGCAGGGTTCATTGGCACAATACGAACGAAATGATGAGGCGCCTACTGAATAGTCCATACCAAGTTTGTAGGTCATACACTCGTGCTGTTCTTCACGAAGATATACACAAACATATCAAACAAACCACAAGCAAATAGGTGAAATCACCAACCTTCCCAATACTGAGGCAGCTAGAAATCAACACTTCAGCAGTGAGTGTGAGACAGAGCTAGTATCAAGCAGTACTCATCAACATAATGAGCCACTTAGCCTTACAGATTGTGTTATTTCCCAAAAAATAAAAAGTGAGATGAAAGACTCAGATTTGAGTCCCAAGATTGTTTTGTTTTTCAGTAAATGGGCTGAATCATTTGTCTCCTCAGGCGTTAATTCGTTATCCCCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGTTCCTGGAAGGTATTTATTTTACATCTAATATTTTTTA]


>consensus_3779#0 TGCACGGGGAACTCGCCGTCCCGGCCTCACTCGGCCAGCCATGGAGCTCGACCTCCCGCC GAAGCAACAAGCCCCGCCGCTCGCCGACCTCGCCGTTGCCATCCACCGGGCCGCCGAGGC CACCACCGCGCTCTCCGCACCCTCCTCCTCTTCCCAAGCCGCCGCCGCCGCGGTGGTCGC CCTCCGTGACGCCCACGCCGCTATAGGCGGCTTCCTCTATCGCCTCGACGTCTCAGTCCC TGCCTCTTCTTCGTCCAGCGACGATCAGCCGATGGCGGACGGCTGCGAGGAGGAGGGGGA GGGGGAGCAGCAGATGGTAGAGGAGGTGGAGGAGGGTCTCCGGGAGTGCGCCCTGCAGGG GAGCAAGCGGCGGAAGCGGCCTGTGCCGCCGTCGTGGCCCCTAGGGCGCCGCTCGAGTGG CGGTTGCGTGGTGCCGGAGGCCGCGCCGGCTCCTCTGGACGTGGAGGGGCGGCGGCGCGC TGCCATGGATCTCTTGCTACAGTTCCATGGGTAGGATGAGTGCAGGGTTCATTGGCACAA TACGAACGAAATGATGAGGCGCCTACTGAATAGTCCATACCAAGTTTGTAGGTCATACAC TCGTGCTGTTCTTCACGAAGATATACACAAACATATCAAACAAACCACAAGCAAATAGGT GAAATCACCAACCTTCCCAATACTGAGGCAGCTAGAAATCAACACTTCAGCAGTGAGTGT GAGACAGAGCTAGTATCAAGCAGTACTCATCAACATAATGAGCCACTTAGCCTTACAGAT TGTGTTATTTCCCAAAAAATAAAAAGTGAGATGAAAGACTCAGATTTGAGTCCCAAGATT GTTTTGTTTTTCAGTAAATGGGCTGAATCATTTGTCTCCTCAGGCGTTAATTCGTTATCC CCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGT TCCTGGAAGGTATTTATTTTACATCTAATATTTTTTA



consensusID : consensus_3779#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 188
fasta sequence
                              [CCCAAGATTGTTTTGTTTTTNAGTAAATGGGCTGAATCATTTGTNTCCTCAGGCGTTAATTCGTTATCCCCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGTTCCTGGAAGGTATTTATTTNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU182209             [CCCAAGATTGTTTTGTTTTTNAGTAAATGGGCTGAATCATTTGTNTCCTCAGGCGTTAATTCGTTATCCCCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGTTCCTGGAAGGTATTTATTTNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_3779#1 CCCAAGATTGTTTTGTTTTTNAGTAAATGGGCTGAATCATTTGTNTCCTCAGGCGTTAAT TCGTTATCCCCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCT CAAACATGTTCCTGGAAGGTATTTATTTNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3779#0      TGCACGGGGAACTCGCCGTCCCGGCCTCACTCGGCCAGCCATGGAGCTCGACCTCCCGCC 60
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      GAAGCAACAAGCCCCGCCGCTCGCCGACCTCGCCGTTGCCATCCACCGGGCCGCCGAGGC 120
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      CACCACCGCGCTCTCCGCACCCTCCTCCTCTTCCCAAGCCGCCGCCGCCGCGGTGGTCGC 180
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      CCTCCGTGACGCCCACGCCGCTATAGGCGGCTTCCTCTATCGCCTCGACGTCTCAGTCCC 240
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      TGCCTCTTCTTCGTCCAGCGACGATCAGCCGATGGCGGACGGCTGCGAGGAGGAGGGGGA 300
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      GGGGGAGCAGCAGATGGTAGAGGAGGTGGAGGAGGGTCTCCGGGAGTGCGCCCTGCAGGG 360
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      GAGCAAGCGGCGGAAGCGGCCTGTGCCGCCGTCGTGGCCCCTAGGGCGCCGCTCGAGTGG 420
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      CGGTTGCGTGGTGCCGGAGGCCGCGCCGGCTCCTCTGGACGTGGAGGGGCGGCGGCGCGC 480
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      TGCCATGGATCTCTTGCTACAGTTCCATGGGTAGGATGAGTGCAGGGTTCATTGGCACAA 540
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      TACGAACGAAATGATGAGGCGCCTACTGAATAGTCCATACCAAGTTTGTAGGTCATACAC 600
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      TCGTGCTGTTCTTCACGAAGATATACACAAACATATCAAACAAACCACAAGCAAATAGGT 660
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      GAAATCACCAACCTTCCCAATACTGAGGCAGCTAGAAATCAACACTTCAGCAGTGAGTGT 720
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      GAGACAGAGCTAGTATCAAGCAGTACTCATCAACATAATGAGCCACTTAGCCTTACAGAT 780
consensus_3779#1      ------------------------------------------------------------
                                                                                  

consensus_3779#0      TGTGTTATTTCCCAAAAAATAAAAAGTGAGATGAAAGACTCAGATTTGAGTCCCAAGATT 840
consensus_3779#1      ---------------------------------------------------CCCAAGATT 9
                                                                         *********

consensus_3779#0      GTTTTGTTTTTCAGTAAATGGGCTGAATCATTTGTCTCCTCAGGCGTTAATTCGTTATCC 900
consensus_3779#1      GTTTTGTTTTTNAGTAAATGGGCTGAATCATTTGTNTCCTCAGGCGTTAATTCGTTATCC 69
                      *********** *********************** ************************

consensus_3779#0      CCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGT 960
consensus_3779#1      CCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGT 129
                      ************************************************************

consensus_3779#0      TCCTGGAAGGTATTTATTTTACATCTAATATTTTTTA---------------------- 997
consensus_3779#1      TCCTGGAAGGTATTTATTTNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 188
                      ******************* ***   ** *      *                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)