These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3779#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 997 fasta sequence [TGCACGGGGAACTCGCCGTCCCGGCCTCACTCGGCCAGCCATGGAGCTCGACCTCCCGCCGAAGCAACAAGCCCCGCCGCTCGCCGACCTCGCCGTTGCCATCCACCGGGCCGCCGAGGCCACCACCGCGCTCTCCGCACCCTCCTCCTCTTCCCAAGCCGCCGCCGCCGCGGTGGTCGCCCTCCGTGACGCCCACGCCGCTATAGGCGGCTTCCTCTATCGCCTCGACGTCTCAGTCCCTGCCTCTTCTTCGTCCAGCGACGATCAGCCGATGGCGGACGGCTGCGAGGAGGAGGGGGAGGGGGAGCAGCAGATGGTAGAGGAGGTGGAGGAGGGTCTCCGGGAGTGCGCCCTGCAGGGGAGCAAGCGGCGGAAGCGGCCTGTGCCGCCGTCGTGGCCCCTAGGGCGCCGCTCGAGTGGCGGTTGCGTGGTGCCGGAGGCCGCGCCGGCTCCTCTGGACGTGGAGGGGCGGCGGCGCGCTGCCATGGATCTCTTGCTACAGTTCCATGGGTAGGATGAGTGCAGGGTTCATTGGCACAATACGAACGAAATGATGAGGCGCCTACTGAATAGTCCATACCAAGTTTGTAGGTCATACACTCGTGCTGTTCTTCACGAAGATATACACAAACATATCAAACAAACCACAAGCAAATAGGTGAAATCACCAACCTTCCCAATACTGAGGCAGCTAGAAATCAACACTTCAGCAGTGAGTGTGAGACAGAGCTAGTATCAAGCAGTACTCATCAACATAATGAGCCACTTAGCCTTACAGATTGTGTTATTTCCCAAAAAATAAAAAGTGAGATGAAAGACTCAGATTTGAGTCCCAAGATTGTTTTGTTTTTCAGTAAATGGGCTGAATCATTTGTCTCCTCAGGCGTTAATTCGTTATCCCCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGTTCCTGGAAGGTATTTATTTTACATCTAATATTTTTTA] [+] EMBL AK073622 [TGCACGGGGAACTCGCCGTCCCGGCCTCACTCGGCCAGCCATGGAGCTCGACCTCCCGCCGAAGCAACAAGCCCCGCCGCTCGCCGACCTCGCCGTTGCCATCCACCGGGCCGCCGAGGCCACCACCGCGCTCTCCGCACCCTCCTCCTCTTCCCAAGCCGCCGCCGCCGCGGTGGTCGCCCTCCGTGACGCCCACGCCGCTATAGGCGGCTTCCTCTATCGCCTCGACGTCTCAGTCCCTGCCTCTTCTTCGTCCAGCGACGATCAGCCGATGGCGGACGGCTGCGAGGAGGAGGGGGAGGGGGAGCAGCAGATGGTAGAGGAGGTGGAGGAGGGTCTCCGGGAGTGCGCCCTGCAGGGGAGCAAGCGGCGGAAGCGGCCTGTGCCGCCGTCGTGGCCCCTAGGGCGCCGCTCGAGTGGCGGTTGCGTGGTGCCGGAGGCCGCGCCGGCTCCTCTGGACGTGGAGGGGCGGCGGCGCGCTGCCATGGATCTCTTGCTACAGTTCCATGGGTAGGATGAGTGCAGGGTTCATTGGCACAATACGAACGAAATGATGAGGCGCCTACTGAATAGTCCATACCAAGTTTGTAGGTCATACACTCGTGCTGTTCTTCACGAAGATATACACAAACATATCAAACAAACCACAAGCAAATAGGTGAAATCACCAACCTTCCCAATACTGAGGCAGCTAGAAATCAACACTTCAGCAGTGAGTGTGAGACAGAGCTAGTATCAAGCAGTACTCATCAACATAATGAGCCACTTAGCCTTACAGATTGTGTTATTTCCCAAAAAATAAAAAGTGAGATGAAAGACTCAGATTTGAGTCCCAAGATTGTTTTGTTTTTCAGTAAATGGGCTGAATCATTTGTCTCCTCAGGCGTTAATTCGTTATCCCCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGTTCCTGGAAGGTATTTATTTTACATCTAATATTTTTTA] consensusID : consensus_3779#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence [CCCAAGATTGTTTTGTTTTTNAGTAAATGGGCTGAATCATTTGTNTCCTCAGGCGTTAATTCGTTATCCCCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGTTCCTGGAAGGTATTTATTTNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU182209 [CCCAAGATTGTTTTGTTTTTNAGTAAATGGGCTGAATCATTTGTNTCCTCAGGCGTTAATTCGTTATCCCCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGTTCCTGGAAGGTATTTATTTNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3779#0 TGCACGGGGAACTCGCCGTCCCGGCCTCACTCGGCCAGCCATGGAGCTCGACCTCCCGCC 60 consensus_3779#1 ------------------------------------------------------------ consensus_3779#0 GAAGCAACAAGCCCCGCCGCTCGCCGACCTCGCCGTTGCCATCCACCGGGCCGCCGAGGC 120 consensus_3779#1 ------------------------------------------------------------ consensus_3779#0 CACCACCGCGCTCTCCGCACCCTCCTCCTCTTCCCAAGCCGCCGCCGCCGCGGTGGTCGC 180 consensus_3779#1 ------------------------------------------------------------ consensus_3779#0 CCTCCGTGACGCCCACGCCGCTATAGGCGGCTTCCTCTATCGCCTCGACGTCTCAGTCCC 240 consensus_3779#1 ------------------------------------------------------------ consensus_3779#0 TGCCTCTTCTTCGTCCAGCGACGATCAGCCGATGGCGGACGGCTGCGAGGAGGAGGGGGA 300 consensus_3779#1 ------------------------------------------------------------ consensus_3779#0 GGGGGAGCAGCAGATGGTAGAGGAGGTGGAGGAGGGTCTCCGGGAGTGCGCCCTGCAGGG 360 consensus_3779#1 ------------------------------------------------------------ consensus_3779#0 GAGCAAGCGGCGGAAGCGGCCTGTGCCGCCGTCGTGGCCCCTAGGGCGCCGCTCGAGTGG 420 consensus_3779#1 ------------------------------------------------------------ consensus_3779#0 CGGTTGCGTGGTGCCGGAGGCCGCGCCGGCTCCTCTGGACGTGGAGGGGCGGCGGCGCGC 480 consensus_3779#1 ------------------------------------------------------------ consensus_3779#0 TGCCATGGATCTCTTGCTACAGTTCCATGGGTAGGATGAGTGCAGGGTTCATTGGCACAA 540 consensus_3779#1 ------------------------------------------------------------ consensus_3779#0 TACGAACGAAATGATGAGGCGCCTACTGAATAGTCCATACCAAGTTTGTAGGTCATACAC 600 consensus_3779#1 ------------------------------------------------------------ consensus_3779#0 TCGTGCTGTTCTTCACGAAGATATACACAAACATATCAAACAAACCACAAGCAAATAGGT 660 consensus_3779#1 ------------------------------------------------------------ consensus_3779#0 GAAATCACCAACCTTCCCAATACTGAGGCAGCTAGAAATCAACACTTCAGCAGTGAGTGT 720 consensus_3779#1 ------------------------------------------------------------ consensus_3779#0 GAGACAGAGCTAGTATCAAGCAGTACTCATCAACATAATGAGCCACTTAGCCTTACAGAT 780 consensus_3779#1 ------------------------------------------------------------ consensus_3779#0 TGTGTTATTTCCCAAAAAATAAAAAGTGAGATGAAAGACTCAGATTTGAGTCCCAAGATT 840 consensus_3779#1 ---------------------------------------------------CCCAAGATT 9 ********* consensus_3779#0 GTTTTGTTTTTCAGTAAATGGGCTGAATCATTTGTCTCCTCAGGCGTTAATTCGTTATCC 900 consensus_3779#1 GTTTTGTTTTTNAGTAAATGGGCTGAATCATTTGTNTCCTCAGGCGTTAATTCGTTATCC 69 *********** *********************** ************************ consensus_3779#0 CCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGT 960 consensus_3779#1 CCTGTACCTCCTACGCCACCAGTCTTATGAGTGGATTGACAGTTGCTTGCTCAAACATGT 129 ************************************************************ consensus_3779#0 TCCTGGAAGGTATTTATTTTACATCTAATATTTTTTA---------------------- 997 consensus_3779#1 TCCTGGAAGGTATTTATTTNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 188 ******************* *** ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||