cluster # 3781

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Oryza sativa
cluster # 3781 cluster # 3781 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3781#0 length = 1488 sequences # 1

consensus_3781#1 length = 577 sequences # 1

consensusID : consensus_3781#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1488
fasta sequence

                              [ATGGAAACGCAACGCTGTTGCTAGCCCAGAGAAAGAAAGACGAGGAAAGGAGGAGCAGGCGGCGGCGTCCAGGGTCCAGCAGCATAGCATTGAGCTTGAGCATGGTTTCCCCTTCGCTTCGGATCCCCGCGGCCGCGCGCGTCTTCGATCCCGCCATCAACACCCGCTGCCCTCCGCCCCACGCCGTCGTCATGCGCATGCGCAGTCGCAGCCGCCGTTCCATCGCTGCCTCCGCTTCGCCGCCGGGGGACCCCTCCATCCGCGACCCCATCTCACTGCCAAGGCCGCTCACCAGCGCGGATCTGATGGAGGCCAGCGGAGACGGTTTGAAGGTCGCATACCAGGGATGCCCGGGTGCCTACAGTGAGGCCGCCGCCAAGAAGGCGTACCCGAGTTGCCACACCGTGCCCTGCGAATACTTCGAGACCGCCTTTCAGGCTGTCGAAAATTGGGTGGCTGACCGCGCGGTCCTGCCACTTGAGAATTCCTTGGGTGGTAGCATCCATCGAAACTATGACCTTCTACTTCGCCATAGGCTGCACATTGTTGGTGAGGTGCGCCTTGCAGTTCGCCATTGCTTGTTAGCAAATCGTGGTGTGAAGATCCAAAATTTGAGAAGTGCCATGAGCCATCCTCAAGCTCTTGCACAGTGTGAACAAACACTGACAAAGTTAGGCATCGAGCATAGAGAAGCTGTTGACGATACAGCAGGTGCAGCAAAGCTTATTGCAGAACAAAAGCTCCAGGACACTGGAGCAGTTGCTAGTTCATTGGCAGCTCAACTTTATGGACTGGATATTCTTGCAGAAAATATTCAGGATGACACCGATAATGTAACACGCTTTATGATGCTGGCTCGGGAACCCATTATTCCTCGTACTGATAAGCCATTCAAGACTAGCATAGTCTTTTCTTTGGAAGAAGGGCCTGGGCAACTATTTAAGGCGCTGGCAGTGTTTGCACTGAGAAAAATTAACCTCACCAAGATGGAAAGCCGTCCACACAAGAAAAAGCCTCTACGTATAGCTGATGATAATTGTTCTGCACCATTGAAGCATTTCGACTACCTCTTCTATGTAGATCTTGAGGCGTCAATGGCTGATCCAAATGCTCAAAATGCTCTGGCAAACTTAAAGGAGTTCGCAACCTTTCTAAGAGTTCTTGGGAGCTATCCTACCGATGTCAGTGAAGCATGAATTGTCAAGTACCTGTTTTGAATATACTTGGACCAGCGTTATCATGAATGAGCTTACGATTGGTTCTATCGCCAACTTGGAAGCACCGATAGCAGAAGTGGTACTAACTTGGAGGGTAACGATATGACATATTGATAGAGAGAATGGCACAAAGGTGCACGATGTTTTGTTCTTGTTTTTAAGTTCTCATTGTTGTGTTAGTGACGATTTCCTTTTGAAAGGGGCCTTTATGCAATATCCCACTTACCCAAAAGAACAGTGATGAGATATCAAAGCTAAGGCCAAAGAATTG]

[+] EMBL AK066428             [ATGGAAACGCAACGCTGTTGCTAGCCCAGAGAAAGAAAGACGAGGAAAGGAGGAGCAGGCGGCGGCGTCCAGGGTCCAGCAGCATAGCATTGAGCTTGAGCATGGTTTCCCCTTCGCTTCGGATCCCCGCGGCCGCGCGCGTCTTCGATCCCGCCATCAACACCCGCTGCCCTCCGCCCCACGCCGTCGTCATGCGCATGCGCAGTCGCAGCCGCCGTTCCATCGCTGCCTCCGCTTCGCCGCCGGGGGACCCCTCCATCCGCGACCCCATCTCACTGCCAAGGCCGCTCACCAGCGCGGATCTGATGGAGGCCAGCGGAGACGGTTTGAAGGTCGCATACCAGGGATGCCCGGGTGCCTACAGTGAGGCCGCCGCCAAGAAGGCGTACCCGAGTTGCCACACCGTGCCCTGCGAATACTTCGAGACCGCCTTTCAGGCTGTCGAAAATTGGGTGGCTGACCGCGCGGTCCTGCCACTTGAGAATTCCTTGGGTGGTAGCATCCATCGAAACTATGACCTTCTACTTCGCCATAGGCTGCACATTGTTGGTGAGGTGCGCCTTGCAGTTCGCCATTGCTTGTTAGCAAATCGTGGTGTGAAGATCCAAAATTTGAGAAGTGCCATGAGCCATCCTCAAGCTCTTGCACAGTGTGAACAAACACTGACAAAGTTAGGCATCGAGCATAGAGAAGCTGTTGACGATACAGCAGGTGCAGCAAAGCTTATTGCAGAACAAAAGCTCCAGGACACTGGAGCAGTTGCTAGTTCATTGGCAGCTCAACTTTATGGACTGGATATTCTTGCAGAAAATATTCAGGATGACACCGATAATGTAACACGCTTTATGATGCTGGCTCGGGAACCCATTATTCCTCGTACTGATAAGCCATTCAAGACTAGCATAGTCTTTTCTTTGGAAGAAGGGCCTGGGCAACTATTTAAGGCGCTGGCAGTGTTTGCACTGAGAAAAATTAACCTCACCAAGATGGAAAGCCGTCCACACAAGAAAAAGCCTCTACGTATAGCTGATGATAATTGTTCTGCACCATTGAAGCATTTCGACTACCTCTTCTATGTAGATCTTGAGGCGTCAATGGCTGATCCAAATGCTCAAAATGCTCTGGCAAACTTAAAGGAGTTCGCAACCTTTCTAAGAGTTCTTGGGAGCTATCCTACCGATGTCAGTGAAGCATGAATTGTCAAGTACCTGTTTTGAATATACTTGGACCAGCGTTATCATGAATGAGCTTACGATTGGTTCTATCGCCAACTTGGAAGCACCGATAGCAGAAGTGGTACTAACTTGGAGGGTAACGATATGACATATTGATAGAGAGAATGGCACAAAGGTGCACGATGTTTTGTTCTTGTTTTTAAGTTCTCATTGTTGTGTTAGTGACGATTTCCTTTTGAAAGGGGCCTTTATGCAATATCCCACTTACCCAAAAGAACAGTGATGAGATATCAAAGCTAAGGCCAAAGAATTG]




>consensus_3781#0
ATGGAAACGCAACGCTGTTGCTAGCCCAGAGAAAGAAAGACGAGGAAAGGAGGAGCAGGC
GGCGGCGTCCAGGGTCCAGCAGCATAGCATTGAGCTTGAGCATGGTTTCCCCTTCGCTTC
GGATCCCCGCGGCCGCGCGCGTCTTCGATCCCGCCATCAACACCCGCTGCCCTCCGCCCC
ACGCCGTCGTCATGCGCATGCGCAGTCGCAGCCGCCGTTCCATCGCTGCCTCCGCTTCGC
CGCCGGGGGACCCCTCCATCCGCGACCCCATCTCACTGCCAAGGCCGCTCACCAGCGCGG
ATCTGATGGAGGCCAGCGGAGACGGTTTGAAGGTCGCATACCAGGGATGCCCGGGTGCCT
ACAGTGAGGCCGCCGCCAAGAAGGCGTACCCGAGTTGCCACACCGTGCCCTGCGAATACT
TCGAGACCGCCTTTCAGGCTGTCGAAAATTGGGTGGCTGACCGCGCGGTCCTGCCACTTG
AGAATTCCTTGGGTGGTAGCATCCATCGAAACTATGACCTTCTACTTCGCCATAGGCTGC
ACATTGTTGGTGAGGTGCGCCTTGCAGTTCGCCATTGCTTGTTAGCAAATCGTGGTGTGA
AGATCCAAAATTTGAGAAGTGCCATGAGCCATCCTCAAGCTCTTGCACAGTGTGAACAAA
CACTGACAAAGTTAGGCATCGAGCATAGAGAAGCTGTTGACGATACAGCAGGTGCAGCAA
AGCTTATTGCAGAACAAAAGCTCCAGGACACTGGAGCAGTTGCTAGTTCATTGGCAGCTC
AACTTTATGGACTGGATATTCTTGCAGAAAATATTCAGGATGACACCGATAATGTAACAC
GCTTTATGATGCTGGCTCGGGAACCCATTATTCCTCGTACTGATAAGCCATTCAAGACTA
GCATAGTCTTTTCTTTGGAAGAAGGGCCTGGGCAACTATTTAAGGCGCTGGCAGTGTTTG
CACTGAGAAAAATTAACCTCACCAAGATGGAAAGCCGTCCACACAAGAAAAAGCCTCTAC
GTATAGCTGATGATAATTGTTCTGCACCATTGAAGCATTTCGACTACCTCTTCTATGTAG
ATCTTGAGGCGTCAATGGCTGATCCAAATGCTCAAAATGCTCTGGCAAACTTAAAGGAGT
TCGCAACCTTTCTAAGAGTTCTTGGGAGCTATCCTACCGATGTCAGTGAAGCATGAATTG
TCAAGTACCTGTTTTGAATATACTTGGACCAGCGTTATCATGAATGAGCTTACGATTGGT
TCTATCGCCAACTTGGAAGCACCGATAGCAGAAGTGGTACTAACTTGGAGGGTAACGATA
TGACATATTGATAGAGAGAATGGCACAAAGGTGCACGATGTTTTGTTCTTGTTTTTAAGT
TCTCATTGTTGTGTTAGTGACGATTTCCTTTTGAAAGGGGCCTTTATGCAATATCCCACT
TACCCAAAAGAACAGTGATGAGATATCAAAGCTAAGGCCAAAGAATTG

consensusID : consensus_3781#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence

                              [CAGGCTGTCGAAAATTGGGTGGCTGACCGCGCGGTCCTGCCACTTGAGAATTCCTTGGGTGGTAGCATCCATCGAAACTATGACCTTCTACTTCGCCATAGGCTGCACATTGTTGGTGAGGTGCGCCTTGCAGTTCGCCATTGCTTGTTAGCAAATCGTGGTGTGAAGATCCAAAATTTGAGAAGTGCCATGAGCCATCCTCAAGTAAGTTTACCCCCAACAATACTAATCTATTCTCGACCCTTTGTTATTTGCTTGTCAGAATGAACCTTTAGGGTCATTTTCTTTCTTCTTAATTAATTTTGTAGGCTCTTGCACAGTGTGAACAAACACTGACAAAGTTAGGCATCGAGCATAGAGAAGCTGTTGACGATACAGCAGGTGCAGCAAAGCTTATTGCAGAACAAAAGCTCCAGGACACTGGAGCAGTTGCTAGTTCATTGGCAGCTCAACTTTATGGACTGGATATTCTTGCAGAAAATATTCAGGATGACACCGATAATGTAACACGCTTTATGATGCTGGCTCGGGAACCCATTATTCCTCGTACTGATAAGCCATTCAAGACTAGCATAGT]

[+] EMBL CF303856             [CAGGCTGTCGAAAATTGGGTGGCTGACCGCGCGGTCCTGCCACTTGAGAATTCCTTGGGTGGTAGCATCCATCGAAACTATGACCTTCTACTTCGCCATAGGCTGCACATTGTTGGTGAGGTGCGCCTTGCAGTTCGCCATTGCTTGTTAGCAAATCGTGGTGTGAAGATCCAAAATTTGAGAAGTGCCATGAGCCATCCTCAAGTAAGTTTACCCCCAACAATACTAATCTATTCTCGACCCTTTGTTATTTGCTTGTCAGAATGAACCTTTAGGGTCATTTTCTTTCTTCTTAATTAATTTTGTAGGCTCTTGCACAGTGTGAACAAACACTGACAAAGTTAGGCATCGAGCATAGAGAAGCTGTTGACGATACAGCAGGTGCAGCAAAGCTTATTGCAGAACAAAAGCTCCAGGACACTGGAGCAGTTGCTAGTTCATTGGCAGCTCAACTTTATGGACTGGATATTCTTGCAGAAAATATTCAGGATGACACCGATAATGTAACACGCTTTATGATGCTGGCTCGGGAACCCATTATTCCTCGTACTGATAAGCCATTCAAGACTAGCATAGT]




>consensus_3781#1
CAGGCTGTCGAAAATTGGGTGGCTGACCGCGCGGTCCTGCCACTTGAGAATTCCTTGGGT
GGTAGCATCCATCGAAACTATGACCTTCTACTTCGCCATAGGCTGCACATTGTTGGTGAG
GTGCGCCTTGCAGTTCGCCATTGCTTGTTAGCAAATCGTGGTGTGAAGATCCAAAATTTG
AGAAGTGCCATGAGCCATCCTCAAGTAAGTTTACCCCCAACAATACTAATCTATTCTCGA
CCCTTTGTTATTTGCTTGTCAGAATGAACCTTTAGGGTCATTTTCTTTCTTCTTAATTAA
TTTTGTAGGCTCTTGCACAGTGTGAACAAACACTGACAAAGTTAGGCATCGAGCATAGAG
AAGCTGTTGACGATACAGCAGGTGCAGCAAAGCTTATTGCAGAACAAAAGCTCCAGGACA
CTGGAGCAGTTGCTAGTTCATTGGCAGCTCAACTTTATGGACTGGATATTCTTGCAGAAA
ATATTCAGGATGACACCGATAATGTAACACGCTTTATGATGCTGGCTCGGGAACCCATTA
TTCCTCGTACTGATAAGCCATTCAAGACTAGCATAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3781#0      ATGGAAACGCAACGCTGTTGCTAGCCCAGAGAAAGAAAGACGAGGAAAGGAGGAGCAGGC 60
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      GGCGGCGTCCAGGGTCCAGCAGCATAGCATTGAGCTTGAGCATGGTTTCCCCTTCGCTTC 120
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      GGATCCCCGCGGCCGCGCGCGTCTTCGATCCCGCCATCAACACCCGCTGCCCTCCGCCCC 180
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      ACGCCGTCGTCATGCGCATGCGCAGTCGCAGCCGCCGTTCCATCGCTGCCTCCGCTTCGC 240
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      CGCCGGGGGACCCCTCCATCCGCGACCCCATCTCACTGCCAAGGCCGCTCACCAGCGCGG 300
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      ATCTGATGGAGGCCAGCGGAGACGGTTTGAAGGTCGCATACCAGGGATGCCCGGGTGCCT 360
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      ACAGTGAGGCCGCCGCCAAGAAGGCGTACCCGAGTTGCCACACCGTGCCCTGCGAATACT 420
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      TCGAGACCGCCTTTCAGGCTGTCGAAAATTGGGTGGCTGACCGCGCGGTCCTGCCACTTG 480
consensus_3781#1      --------------CAGGCTGTCGAAAATTGGGTGGCTGACCGCGCGGTCCTGCCACTTG 46
                                    **********************************************

consensus_3781#0      AGAATTCCTTGGGTGGTAGCATCCATCGAAACTATGACCTTCTACTTCGCCATAGGCTGC 540
consensus_3781#1      AGAATTCCTTGGGTGGTAGCATCCATCGAAACTATGACCTTCTACTTCGCCATAGGCTGC 106
                      ************************************************************

consensus_3781#0      ACATTGTTGGTGAGGTGCGCCTTGCAGTTCGCCATTGCTTGTTAGCAAATCGTGGTGTGA 600
consensus_3781#1      ACATTGTTGGTGAGGTGCGCCTTGCAGTTCGCCATTGCTTGTTAGCAAATCGTGGTGTGA 166
                      ************************************************************

consensus_3781#0      AGATCCAAAATTTGAGAAGTGCCATGAGCCATCCTCAAG--------------------- 639
consensus_3781#1      AGATCCAAAATTTGAGAAGTGCCATGAGCCATCCTCAAGTAAGTTTACCCCCAACAATAC 226
                      ***************************************                     

consensus_3781#0      ------------------------------------------------------------
consensus_3781#1      TAATCTATTCTCGACCCTTTGTTATTTGCTTGTCAGAATGAACCTTTAGGGTCATTTTCT 286
                                                                                  

consensus_3781#0      -----------------------CTCTTGCACAGTGTGAACAAACACTGACAAAGTTAGG 676
consensus_3781#1      TTCTTCTTAATTAATTTTGTAGGCTCTTGCACAGTGTGAACAAACACTGACAAAGTTAGG 346
                                             *************************************

consensus_3781#0      CATCGAGCATAGAGAAGCTGTTGACGATACAGCAGGTGCAGCAAAGCTTATTGCAGAACA 736
consensus_3781#1      CATCGAGCATAGAGAAGCTGTTGACGATACAGCAGGTGCAGCAAAGCTTATTGCAGAACA 406
                      ************************************************************

consensus_3781#0      AAAGCTCCAGGACACTGGAGCAGTTGCTAGTTCATTGGCAGCTCAACTTTATGGACTGGA 796
consensus_3781#1      AAAGCTCCAGGACACTGGAGCAGTTGCTAGTTCATTGGCAGCTCAACTTTATGGACTGGA 466
                      ************************************************************

consensus_3781#0      TATTCTTGCAGAAAATATTCAGGATGACACCGATAATGTAACACGCTTTATGATGCTGGC 856
consensus_3781#1      TATTCTTGCAGAAAATATTCAGGATGACACCGATAATGTAACACGCTTTATGATGCTGGC 526
                      ************************************************************

consensus_3781#0      TCGGGAACCCATTATTCCTCGTACTGATAAGCCATTCAAGACTAGCATAGTCTTTTCTTT 916
consensus_3781#1      TCGGGAACCCATTATTCCTCGTACTGATAAGCCATTCAAGACTAGCATAGT--------- 577
                      ***************************************************         

consensus_3781#0      GGAAGAAGGGCCTGGGCAACTATTTAAGGCGCTGGCAGTGTTTGCACTGAGAAAAATTAA 976
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      CCTCACCAAGATGGAAAGCCGTCCACACAAGAAAAAGCCTCTACGTATAGCTGATGATAA 1036
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      TTGTTCTGCACCATTGAAGCATTTCGACTACCTCTTCTATGTAGATCTTGAGGCGTCAAT 1096
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      GGCTGATCCAAATGCTCAAAATGCTCTGGCAAACTTAAAGGAGTTCGCAACCTTTCTAAG 1156
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      AGTTCTTGGGAGCTATCCTACCGATGTCAGTGAAGCATGAATTGTCAAGTACCTGTTTTG 1216
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      AATATACTTGGACCAGCGTTATCATGAATGAGCTTACGATTGGTTCTATCGCCAACTTGG 1276
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      AAGCACCGATAGCAGAAGTGGTACTAACTTGGAGGGTAACGATATGACATATTGATAGAG 1336
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      AGAATGGCACAAAGGTGCACGATGTTTTGTTCTTGTTTTTAAGTTCTCATTGTTGTGTTA 1396
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      GTGACGATTTCCTTTTGAAAGGGGCCTTTATGCAATATCCCACTTACCCAAAAGAACAGT 1456
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      GATGAGATATCAAAGCTAAGGCCAAAGAATTG 1488
consensus_3781#1      --------------------------------