These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2183 fasta sequence [TCCCCGTGCCCCACCACTGGCGCCGCTCACCGGTCACGACCAATGCCGCCGACCGCCGCCGTCGCCGTCGCCGTGGCCGCGGCCACCGCGCTCCCTTCTCCCTCCTCCTCCTCCTCCCACCGCCGCCTCCCCGCCACCGCAAAATCCGTCTGGGTAAACCCCAGCCTCCCGAGCTCCCAGCCCTTCCATCGCCGGAAACCCGCCGAGCCCCAGCACCAGCGCCAGGACCACGTGCCCGACCTCCCCGCGCTCCTCGCGGCCCTCTCCGCCGCGCGCACGGCCTCCGACCTGGCCGCCGCGGTCTCCCCGCACCGCCCCGTCTCCCCGCGCCTCCTCGGCACGCTCCTCTCCCGCCTCCCCGACGCGCGCCGCGGCGTCGCGCTCCTCGACCTCCTCGCGCCAGACCTCCCCGCCTCCGCGCTCCTCATCCCGTACAACCTCCTGCTCCGCTCCGCGTGCCGCGCCGGGATGCTCCGCCTCGCCTCCGGCCTCCTCCTGGAGATGCGGGACAGAGGGGTCGCCCCCGACGCGTTCTCGTACTCCACGCTCCTCGCGGCGCTCACCCGCGCGGGCCACCTCGACCACGCGCTCACCTTCCTGCCGCTCATGGAGGACGACGCCGTAGCGCCCGACCTCGTGCTCTTCTCCAACCTCATCCACCTCGCCCTCCGCGGGGGCGACGCGCCCAAGGCGCTCGCGCTCTTCTCCCGCCTTCGGGGCGCCGCCGGGATCAAGCCCGACCTCAAGGCCTACAACGCCGCCATCGCCGCGTACTGCAAGTCCGACCTGCTCCGGGACGCCAACCGGCTCCTCCTCCACGACATGCCCTCCGACGGCGTCGCGCCCGACGCGGAGTCGTACTCCCCCATCCTCGCCGCGCTGGCGCGCCGCGGGCGGCACCTCGCGGCCGTGTCGCTCTTCACGCACATGCGCGCCGTGGCTCGCGTCAAGCCCGACCTGTCCGTGTTCAACATCGTGCTCAACGCGTACGGGCAGCTCGACCTCGCGCGGGAGGCGGACCGGCTGTTCTGGTCCATGCGCCGTGCTGGTGTCGCCCCGAGCGTGGTCACCTACAACACCATGCTCCGCGTGTACGGCGACGCCGGGCTGTTCGGGGAGGCGGTCCACCTGTTCGGCCTCATGCGTAGCGCCGCCTCCGATGGCAGCGACCGCGGTGGCAGCGTCATCAAGCCGAACGTGGTGACGTACAACACCATGATCGCCATCTACGGCAAGTCGCTGGAGGACGAGAAAGCCGGGAGCCTGGTGCAGGACATGCAGGCCAATGGCATCCAGCCCAATGCCATCACCTACTCAACCATCCTGTCCATATGGGTGAAGGCCGGGAAGCTCGACCGTGCGGGAAGCTGTTCGAGAAGCTCCGGGAAGCCGGCACGGAGATCGACCCGGTGCTTTACCAGACGATGGTCGTGGCCTACGAGCGTGCCGGGCTTGTTTCACAATCCAAGCGCCTGTTGCATGACCTCAAAGACTCAGAGGACGTCCCCAAGGAGACAGCCATCAAAATCTTGGCGAATGCCGGCCGAGTGGAGGAGGCCGCATGGCTGTTCCGCCGTGCAGCCGACGCCGGCGACGTCAGGGACACATCGGTGTACCGAATGATGATTGACTTGTTCGCAAAGAGCCGGAGGCACCGGAGTGTGATCGAGGTGTTCGACGAAATGAGGAAGGCGGGGTCTTTGCCGGACTCGGAGACGATCGCCATCACGATGAATGCTCATGGTAAGCTGAAGGAGTTCGACAAGGCGGCGGCGCTGTACCGGGCGATGAGGGAGGAAGGATGCGTCTTCTCAGACAGGGTGCACTTCCAGATGGTCAGCCTGCTCGGCGCCCAGAAGGACTTCGACGCGCTGGAGGCACTGCTCGGTGAGCTTAGCGATGACCCGAGCATCGACAAGAGGGAGCTTTACCTTGTGGCTGCCGGCGTGTACGAGAGAGCATGCAAGTTTGATGAGTCGTCACAGATTATCAGCCAGATAAGAAGCCCCAACGCCATTGGTGTCCAGAAGTTCAGATGAGAACCTCCAGTTTCTCTGACGACAAATTCAGGTGTATTGCCAGACAGCAATACACACCATAGTGTCATTGACAATTCAAGGTTGTAACTTGTAAGTGCGCGTGGCCACTGTGGAAGTTCTTTTTCAATTAAATTTTAGACACCA] [+] EMBL AK067226 [TCCCCGTGCCCCACCACTGGCGCCGCTCACCGGTCACGACCAATGCCGCCGACCGCCGCCGTCGCCGTCGCCGTGGCCGCGGCCACCGCGCTCCCTTCTCCCTCCTCCTCCTCCTCCCACCGCCGCCTCCCCGCCACCGCAAAATCCGTCTGGGTAAACCCCAGCCTCCCGAGCTCCCAGCCCTTCCATCGCCGGAAACCCGCCGAGCCCCAGCACCAGCGCCAGGACCACGTGCCCGACCTCCCCGCGCTCCTCGCGGCCCTCTCCGCCGCGCGCACGGCCTCCGACCTGGCCGCCGCGGTCTCCCCGCACCGCCCCGTCTCCCCGCGCCTCCTCGGCACGCTCCTCTCCCGCCTCCCCGACGCGCGCCGCGGCGTCGCGCTCCTCGACCTCCTCGCGCCAGACCTCCCCGCCTCCGCGCTCCTCATCCCGTACAACCTCCTGCTCCGCTCCGCGTGCCGCGCCGGGATGCTCCGCCTCGCCTCCGGCCTCCTCCTGGAGATGCGGGACAGAGGGGTCGCCCCCGACGCGTTCTCGTACTCCACGCTCCTCGCGGCGCTCACCCGCGCGGGCCACCTCGACCACGCGCTCACCTTCCTGCCGCTCATGGAGGACGACGCCGTAGCGCCCGACCTCGTGCTCTTCTCCAACCTCATCCACCTCGCCCTCCGCGGGGGCGACGCGCCCAAGGCGCTCGCGCTCTTCTCCCGCCTTCGGGGCGCCGCCGGGATCAAGCCCGACCTCAAGGCCTACAACGCCGCCATCGCCGCGTACTGCAAGTCCGACCTGCTCCGGGACGCCAACCGGCTCCTCCTCCACGACATGCCCTCCGACGGCGTCGCGCCCGACGCGGAGTCGTACTCCCCCATCCTCGCCGCGCTGGCGCGCCGCGGGCGGCACCTCGCGGCCGTGTCGCTCTTCACGCACATGCGCGCCGTGGCTCGCGTCAAGCCCGACCTGTCCGTGTTCAACATCGTGCTCAACGCGTACGGGCAGCTCGACCTCGCGCGGGAGGCGGACCGGCTGTTCTGGTCCATGCGCCGTGCTGGTGTCGCCCCGAGCGTGGTCACCTACAACACCATGCTCCGCGTGTACGGCGACGCCGGGCTGTTCGGGGAGGCGGTCCACCTGTTCGGCCTCATGCGTAGCGCCGCCTCCGATGGCAGCGACCGCGGTGGCAGCGTCATCAAGCCGAACGTGGTGACGTACAACACCATGATCGCCATCTACGGCAAGTCGCTGGAGGACGAGAAAGCCGGGAGCCTGGTGCAGGACATGCAGGCCAATGGCATCCAGCCCAATGCCATCACCTACTCAACCATCCTGTCCATATGGGTGAAGGCCGGGAAGCTCGACCGTGCGGGAAGCTGTTCGAGAAGCTCCGGGAAGCCGGCACGGAGATCGACCCGGTGCTTTACCAGACGATGGTCGTGGCCTACGAGCGTGCCGGGCTTGTTTCACAATCCAAGCGCCTGTTGCATGACCTCAAAGACTCAGAGGACGTCCCCAAGGAGACAGCCATCAAAATCTTGGCGAATGCCGGCCGAGTGGAGGAGGCCGCATGGCTGTTCCGCCGTGCAGCCGACGCCGGCGACGTCAGGGACACATCGGTGTACCGAATGATGATTGACTTGTTCGCAAAGAGCCGGAGGCACCGGAGTGTGATCGAGGTGTTCGACGAAATGAGGAAGGCGGGGTCTTTGCCGGACTCGGAGACGATCGCCATCACGATGAATGCTCATGGTAAGCTGAAGGAGTTCGACAAGGCGGCGGCGCTGTACCGGGCGATGAGGGAGGAAGGATGCGTCTTCTCAGACAGGGTGCACTTCCAGATGGTCAGCCTGCTCGGCGCCCAGAAGGACTTCGACGCGCTGGAGGCACTGCTCGGTGAGCTTAGCGATGACCCGAGCATCGACAAGAGGGAGCTTTACCTTGTGGCTGCCGGCGTGTACGAGAGAGCATGCAAGTTTGATGAGTCGTCACAGATTATCAGCCAGATAAGAAGCCCCAACGCCATTGGTGTCCAGAAGTTCAGATGAGAACCTCCAGTTTCTCTGACGACAAATTCAGGTGTATTGCCAGACAGCAATACACACCATAGTGTCATTGACAATTCAAGGTTGTAACTTGTAAGTGCGCGTGGCCACTGTGGAAGTTCTTTTTCAATTAAATTTTAGACACCA] consensusID : consensus_379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [GGGGTCGGAGACCGCCTGGCTAATGCCCCGCGCGACTGGCGCCCGGCCGCCGGTGCCGATACAGCAGGGCACACGGCACCCAGCCAGCGCTCAGCGCCCCGATCGGCGCCCCCAGATCATGCGCTCCCTTGTTCGCAAAGACCCGGAGGCACCCCGAGTCTGACCGAGGTGTTCCCCCACATGAGGAAGGCGGGGTCTCTGCCGGACTGGGACACGATCGCCATCCCGATGAATGCTCATGGTAAGCTGAAGGAGTTCGCCAAGGCGCTGGCGCTGTACCGGGCGATGAGGGAGGAAGCATGCGTCTTCTCAGACAGGGTGCACTTCCAGATGGTCAGCCTGCTCGGCGCCCAGAAGGACTTCGACGCGCTGGAGGCACTGCTCGGTGAGCTTAGCGATGACCCGAGCATCGACAAGAGGGAGCTTTACCTTGTGGCTGCCGGCGTGTACGAGAGAGCATGCAAGTTTGATGAGTCGTCACAGATTATCAGCCAGATAAGAAGCCCCAACGCCATTGGTGTCCAGAAGTTCAGATGAGAACCTCCAGTTTCTCTGACGACAAATTCAGGTGTATTGCCAGACAGCAATACACACCATAGTGTTGTTGACAATTCAAGGTTGTAACTTGTAAGTGCGCGTGGCCACTTGTGGA] [-] EMBL CA760248 [GGGGTCGGAGACCGCCTGGCTAATGCCCCGCGCGACTGGCGCCCGGCCGCCGGTGCCGATACAGCAGGGCACACGGCACCCAGCCAGCGCTCAGCGCCCCGATCGGCGCCCCCAGATCATGCGCTCCCTTGTTCGCAAAGACCCGGAGGCACCCCGAGTCTGACCGAGGTGTTCCCCCACATGAGGAAGGCGGGGTCTCTGCCGGACTGGGACACGATCGCCATCCCGATGAATGCTCATGGTAAGCTGAAGGAGTTCGCCAAGGCGCTGGCGCTGTACCGGGCGATGAGGGAGGAAGCATGCGTCTTCTCAGACAGGGTGCACTTCCAGATGGTCAGCCTGCTCGGCGCCCAGAAGGACTTCGACGCGCTGGAGGCACTGCTCGGTGAGCTTAGCGATGACCCGAGCATCGACAAGAGGGAGCTTTACCTTGTGGCTGCCGGCGTGTACGAGAGAGCATGCAAGTTTGATGAGTCGTCACAGATTATCAGCCAGATAAGAAGCCCCAACGCCATTGGTGTCCAGAAGTTCAGATGAGAACCTCCAGTTTCTCTGACGACAAATTCAGGTGTATTGCCAGACAGCAATACACACCATAGTGTTGTTGACAATTCAAGGTTGTAACTTGTAAGTGCGCGTGGCCACTTGTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_379#0 TCCCCGTGCCCCACCACTGGCGCCGCTCACCGGTCACGACCAATGCCGCCGACCGCCGCC 60 consensus_379#1 ------------------------------------------------------------ consensus_379#0 GTCGCCGTCGCCGTGGCCGCGGCCACCGCGCTCCCTTCTCCCTCCTCCTCCTCCTCCCAC 120 consensus_379#1 ------------------------------------------------------------ consensus_379#0 CGCCGCCTCCCCGCCACCGCAAAATCCGTCTGGGTAAACCCCAGCCTCCCGAGCTCCCAG 180 consensus_379#1 ------------------------------------------------------------ consensus_379#0 CCCTTCCATCGCCGGAAACCCGCCGAGCCCCAGCACCAGCGCCAGGACCACGTGCCCGAC 240 consensus_379#1 ------------------------------------------------------------ consensus_379#0 CTCCCCGCGCTCCTCGCGGCCCTCTCCGCCGCGCGCACGGCCTCCGACCTGGCCGCCGCG 300 consensus_379#1 ------------------------------------------------------------ consensus_379#0 GTCTCCCCGCACCGCCCCGTCTCCCCGCGCCTCCTCGGCACGCTCCTCTCCCGCCTCCCC 360 consensus_379#1 ------------------------------------------------------------ consensus_379#0 GACGCGCGCCGCGGCGTCGCGCTCCTCGACCTCCTCGCGCCAGACCTCCCCGCCTCCGCG 420 consensus_379#1 ------------------------------------------------------------ consensus_379#0 CTCCTCATCCCGTACAACCTCCTGCTCCGCTCCGCGTGCCGCGCCGGGATGCTCCGCCTC 480 consensus_379#1 ------------------------------------------------------------ consensus_379#0 GCCTCCGGCCTCCTCCTGGAGATGCGGGACAGAGGGGTCGCCCCCGACGCGTTCTCGTAC 540 consensus_379#1 ------------------------------------------------------------ consensus_379#0 TCCACGCTCCTCGCGGCGCTCACCCGCGCGGGCCACCTCGACCACGCGCTCACCTTCCTG 600 consensus_379#1 ------------------------------------------------------------ consensus_379#0 CCGCTCATGGAGGACGACGCCGTAGCGCCCGACCTCGTGCTCTTCTCCAACCTCATCCAC 660 consensus_379#1 ------------------------------------------------------------ consensus_379#0 CTCGCCCTCCGCGGGGGCGACGCGCCCAAGGCGCTCGCGCTCTTCTCCCGCCTTCGGGGC 720 consensus_379#1 ------------------------------------------------------------ consensus_379#0 GCCGCCGGGATCAAGCCCGACCTCAAGGCCTACAACGCCGCCATCGCCGCGTACTGCAAG 780 consensus_379#1 ------------------------------------------------------------ consensus_379#0 TCCGACCTGCTCCGGGACGCCAACCGGCTCCTCCTCCACGACATGCCCTCCGACGGCGTC 840 consensus_379#1 ------------------------------------------------------------ consensus_379#0 GCGCCCGACGCGGAGTCGTACTCCCCCATCCTCGCCGCGCTGGCGCGCCGCGGGCGGCAC 900 consensus_379#1 ------------------------------------------------------------ consensus_379#0 CTCGCGGCCGTGTCGCTCTTCACGCACATGCGCGCCGTGGCTCGCGTCAAGCCCGACCTG 960 consensus_379#1 ------------------------------------------------------------ consensus_379#0 TCCGTGTTCAACATCGTGCTCAACGCGTACGGGCAGCTCGACCTCGCGCGGGAGGCGGAC 1020 consensus_379#1 ------------------------------------------------------------ consensus_379#0 CGGCTGTTCTGGTCCATGCGCCGTGCTGGTGTCGCCCCGAGCGTGGTCACCTACAACACC 1080 consensus_379#1 ------------------------------------------------------------ consensus_379#0 ATGCTCCGCGTGTACGGCGACGCCGGGCTGTTCGGGGAGGCGGTCCACCTGTTCGGCCTC 1140 consensus_379#1 ------------------------------------------------------------ consensus_379#0 ATGCGTAGCGCCGCCTCCGATGGCAGCGACCGCGGTGGCAGCGTCATCAAGCCGAACGTG 1200 consensus_379#1 ------------------------------------------------------------ consensus_379#0 GTGACGTACAACACCATGATCGCCATCTACGGCAAGTCGCTGGAGGACGAGAAAGCCGGG 1260 consensus_379#1 ------------------------------------------------------------ consensus_379#0 AGCCTGGTGCAGGACATGCAGGCCAATGGCATCCAGCCCAATGCCATCACCTACTCAACC 1320 consensus_379#1 ------------------------------------------------------------ consensus_379#0 ATCCTGTCCATATGGGTGAAGGCCGGGAAGCTCGACCGTGCGGGAAGCTGTTCGAGAAGC 1380 consensus_379#1 ------------------------------------------------------------ consensus_379#0 TCCGGGAAGCCGGCACGGAGATCGACCCGGTGCTTTACCAGACGATGGTCGTGGCCTACG 1440 consensus_379#1 ------------------------------------------------------------ consensus_379#0 AGCGTGCCGGGCTTGTTTCACAATCCAAGCGCCTGTTGCATGACCTCAAAGACTCAGAGG 1500 consensus_379#1 -----------------------------------------------------------G 1 * consensus_379#0 ACGTCCCCAAGGAGACAGCC--ATCAAAATCTTG-GCGAATGCCGGCCGAGTGGAGGAGG 1557 consensus_379#1 GGGTC-----GGAGACCGCCTGGCTAATGCCCCGCGCGACTGGCGCCCGGCCGCCGGTGC 56 *** ****** *** ** * * **** ** ** *** * ** * consensus_379#0 CCGCATGGCTGTTCCGCCGTGCAGCCGACGCCGGCGACGTCAGGGACAC-ATCGGTGTAC 1616 consensus_379#1 CGATACAGCAGGGCACACG-GCACCCA--GCCAGCGC--TCAGCGCCCCGATCGGCGCCC 111 * * ** * * ** *** ** *** *** **** * * * ***** * * consensus_379#0 CGA-ATGATG-ATTGACTTGTTCGCAAAGAGCCGGAGGCACCG-GAGTGTGATCGAGGTG 1673 consensus_379#1 CCAGATCATGCGCTCCCTTGTTCGCAAAGACCCGGAGGCACCCCGAGTCTGACCGAGGTG 171 * * ** *** * ************** *********** **** *** ******* consensus_379#0 TTCGACGAAATGAGGAAGGCGGGGTCTTTGCCGGACTCGGAGACGATCGCCATCACGATG 1733 consensus_379#1 TTCCCCCACATGAGGAAGGCGGGGTCTCTGCCGGACTGGGACACGATCGCCATCCCGATG 231 *** * * ****************** ********* *** ************ ***** consensus_379#0 AATGCTCATGGTAAGCTGAAGGAGTTCGACAAGGCGGCGGCGCTGTACCGGGCGATGAGG 1793 consensus_379#1 AATGCTCATGGTAAGCTGAAGGAGTTCGCCAAGGCGCTGGCGCTGTACCGGGCGATGAGG 291 **************************** ******* ********************** consensus_379#0 GAGGAAGGATGCGTCTTCTCAGACAGGGTGCACTTCCAGATGGTCAGCCTGCTCGGCGCC 1853 consensus_379#1 GAGGAAGCATGCGTCTTCTCAGACAGGGTGCACTTCCAGATGGTCAGCCTGCTCGGCGCC 351 ******* **************************************************** consensus_379#0 CAGAAGGACTTCGACGCGCTGGAGGCACTGCTCGGTGAGCTTAGCGATGACCCGAGCATC 1913 consensus_379#1 CAGAAGGACTTCGACGCGCTGGAGGCACTGCTCGGTGAGCTTAGCGATGACCCGAGCATC 411 ************************************************************ consensus_379#0 GACAAGAGGGAGCTTTACCTTGTGGCTGCCGGCGTGTACGAGAGAGCATGCAAGTTTGAT 1973 consensus_379#1 GACAAGAGGGAGCTTTACCTTGTGGCTGCCGGCGTGTACGAGAGAGCATGCAAGTTTGAT 471 ************************************************************ consensus_379#0 GAGTCGTCACAGATTATCAGCCAGATAAGAAGCCCCAACGCCATTGGTGTCCAGAAGTTC 2033 consensus_379#1 GAGTCGTCACAGATTATCAGCCAGATAAGAAGCCCCAACGCCATTGGTGTCCAGAAGTTC 531 ************************************************************ consensus_379#0 AGATGAGAACCTCCAGTTTCTCTGACGACAAATTCAGGTGTATTGCCAGACAGCAATACA 2093 consensus_379#1 AGATGAGAACCTCCAGTTTCTCTGACGACAAATTCAGGTGTATTGCCAGACAGCAATACA 591 ************************************************************ consensus_379#0 CACCATAGTGTCATTGACAATTCAAGGTTGTAACTTGTAAGTGCGCGTGGCCACT-GTGG 2152 consensus_379#1 CACCATAGTGTTGTTGACAATTCAAGGTTGTAACTTGTAAGTGCGCGTGGCCACTTGTGG 651 *********** ****************************************** **** consensus_379#0 AAGTTCTTTTTCAATTAAATTTTAGACACCA 2183 consensus_379#1 A------------------------------ 652 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||