These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3799#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1445 fasta sequence [CCGCTGCTCCTTCCCCCTCCCCCCACCACCGGCGAAACCCAGACCCACGCCGATCCCTTGCGCGCCGCCACCAGGGCCCTCTCCGCCGCTCCACAGCGTCGCCAGCTGATAGTCCCGAGGAACCCCCCCCCCCCCCGCCCCCCGGGTATCGTCCGCGGCTTCCACCGATCCCTCTCCCCTTCTCGCATGCACCGCGCCGCCACACATCCTTCTTAGATACCTAGACCGAGCGCTCGCCATCGCCGTCACGCCGATCCTCCGCCTCTCGTGTTGCCGACGCCCCGCCATTGCCCGCATCGATCGGCGCCACACATAGGTGCTGCCTTCGTGGCTTAGTGCCGCCTGGGAGACGATATCCGCGAAGTACGTGATGCACTGATGCACCCCTCTGCTGATGACCACCGGGACAACCTATGCGGAGCTGCGTAGCACGCCCCCCTTTCCCCACCGCTGCCTCTTTCCCCAACGACTTCACTGTTTTCTAGATCTGTGACGCTTGGATGTTGACGACGACGCTGTCACGGGCTCACGGCGCTCGGCCATGTCTGGGATGTGCAAGCCAGTTTCCCCTGCTCGATGGGCGTCATGTCCAGGGATAGCTGATGCGGCAGGACAACTGGTTAAGGGAAATATAAAGCACCTGCTGCATATGAGGAGCACCAAAAGTAATATGTAGAAGGCCGTGTGTGGAATTTTGCTACAAACGCAAGATTTCTGCAGTGGAATTTGGTTGTGTTTCTTCATCTACTGGTTGGATGCGGAAGCTTATCATGCAGTAGCCAAATTGCTGAAAAGTAGAAACATTGGTATTCAGGCGAAGGTATTCCAACTTTACTTTTGGGTAGTTTGTGAATATGGGTTCATTTATGCAAACCAGAAGTGGAAGTGGGACTCATAAGATATTAGTGTATAATCTGCGATACATGTACTTGAAGTGGAAGTGAATGGCATAATGGCTTTGCTTAAAATTAGTTTCAATATGGCATGATACGAGATGCCATTGTCAGGACACTTATTTAAGCATGCCATTGCATGATATATATATCTGTTCTTCACATCCAGTACACCGGCAGGGGAAGAAGAGTTATATGCAGCCCATTTAATTTCTAAGATTTTTGTAGACAGCATCAGATAGTACTGTTTGTTGTTTGCCATGGAGGTGCGGCAGCAGGGCAAGTAGGAACACATGTATACTCCATTCCAAACTTATAACTTCACTAGGCCATGCAAACTTGGATAAAATAAGTTAAGTATTGGATGGATGGAAGTTGCTTCTATCTATACTATAAAAAACCCTTGTAGCTGATTCGGTGTGGGTTGTTGCGCCCCTCGAAGGTACTCTTGGCAGCCACCGTGTATTGATCTGATCGTCTTGATCACAGACACTGAAACTTTATAGCGGTGACTTTTTTCGGTGGATTAATTTGTTAAATCAAATACCACAT] [+] EMBL AK109918 [CCGCTGCTCCTTCCCCCTCCCCCCACCACCGGCGAAACCCAGACCCACGCCGATCCCTTGCGCGCCGCCACCAGGGCCCTCTCCGCCGCTCCACAGCGTCGCCAGCTGATAGTCCCGAGGAACCCCCCCCCCCCCCGCCCCCCGGGTATCGTCCGCGGCTTCCACCGATCCCTCTCCCCTTCTCGCATGCACCGCGCCGCCACACATCCTTCTTAGATACCTAGACCGAGCGCTCGCCATCGCCGTCACGCCGATCCTCCGCCTCTCGTGTTGCCGACGCCCCGCCATTGCCCGCATCGATCGGCGCCACACATAGGTGCTGCCTTCGTGGCTTAGTGCCGCCTGGGAGACGATATCCGCGAAGTACGTGATGCACTGATGCACCCCTCTGCTGATGACCACCGGGACAACCTATGCGGAGCTGCGTAGCACGCCCCCCTTTCCCCACCGCTGCCTCTTTCCCCAACGACTTCACTGTTTTCTAGATCTGTGACGCTTGGATGTTGACGACGACGCTGTCACGGGCTCACGGCGCTCGGCCATGTCTGGGATGTGCAAGCCAGTTTCCCCTGCTCGATGGGCGTCATGTCCAGGGATAGCTGATGCGGCAGGACAACTGGTTAAGGGAAATATAAAGCACCTGCTGCATATGAGGAGCACCAAAAGTAATATGTAGAAGGCCGTGTGTGGAATTTTGCTACAAACGCAAGATTTCTGCAGTGGAATTTGGTTGTGTTTCTTCATCTACTGGTTGGATGCGGAAGCTTATCATGCAGTAGCCAAATTGCTGAAAAGTAGAAACATTGGTATTCAGGCGAAGGTATTCCAACTTTACTTTTGGGTAGTTTGTGAATATGGGTTCATTTATGCAAACCAGAAGTGGAAGTGGGACTCATAAGATATTAGTGTATAATCTGCGATACATGTACTTGAAGTGGAAGTGAATGGCATAATGGCTTTGCTTAAAATTAGTTTCAATATGGCATGATACGAGATGCCATTGTCAGGACACTTATTTAAGCATGCCATTGCATGATATATATATCTGTTCTTCACATCCAGTACACCGGCAGGGGAAGAAGAGTTATATGCAGCCCATTTAATTTCTAAGATTTTTGTAGACAGCATCAGATAGTACTGTTTGTTGTTTGCCATGGAGGTGCGGCAGCAGGGCAAGTAGGAACACATGTATACTCCATTCCAAACTTATAACTTCACTAGGCCATGCAAACTTGGATAAAATAAGTTAAGTATTGGATGGATGGAAGTTGCTTCTATCTATACTATAAAAAACCCTTGTAGCTGATTCGGTGTGGGTTGTTGCGCCCCTCGAAGGTACTCTTGGCAGCCACCGTGTATTGATCTGATCGTCTTGATCACAGACACTGAAACTTTATAGCGGTGACTTTTTTCGGTGGATTAATTTGTTAAATCAAATACCACAT] consensusID : consensus_3799#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [GCAGCCACCGTGTATTGATCCGATCCATGTGTGACCCTCTTGATCCCAGGCACTAAAAATTTATAGCGGTGACTTTTTTCGGTGGATTAATTTGTTAAATCAAATACCACATTTATTAAGGTAAGGTCAGGAAGGCTGTGGCTTCCACTTGATTGGTACTCCATAATAGTGCCAAGTAAAATCAGTCTCACTCTGTAGTGGTAGTTGAATGAAGTTCAGTTCCTTACAGTATTTGTTGCTTTTCAGATTTTTGTTTACTTCTCATTCTGTCAGACCAAATCATTCTATAGAAGAAACAATAGCACATATTTTATTAGCCTGTACAGAAACTTGCCTTTGCAGTGACATGGAATGTACTGGTACAATCAATACATAGTGTAATGAGATGTATATTTAAGATTAGGGCCTGGAATGTGTGAGAAGTAAAGTGGATTGGGACATGGTCTGAATCCAACGATCTGAAAATGAATGTTAGGGAAGATAAACATACAAATATTA] [+] EMBL CF304130 [GCAGCCACCGTGTATTGATCCGATCCATGTGTGACCCTCTTGATCCCAGGCACTAAAAATTTATAGCGGTGACTTTTTTCGGTGGATTAATTTGTTAAATCAAATACCACATTTATTAAGGTAAGGTCAGGAAGGCTGTGGCTTCCACTTGATTGGTACTCCATAATAGTGCCAAGTAAAATCAGTCTCACTCTGTAGTGGTAGTTGAATGAAGTTCAGTTCCTTACAGTATTTGTTGCTTTTCAGATTTTTGTTTACTTCTCATTCTGTCAGACCAAATCATTCTATAGAAGAAACAATAGCACATATTTTATTAGCCTGTACAGAAACTTGCCTTTGCAGTGACATGGAATGTACTGGTACAATCAATACATAGTGTAATGAGATGTATATTTAAGATTAGGGCCTGGAATGTGTGAGAAGTAAAGTGGATTGGGACATGGTCTGAATCCAACGATCTGAAAATGAATGTTAGGGAAGATAAACATACAAATATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3799#0 CCGCTGCTCCTTCCCCCTCCCCCCACCACCGGCGAAACCCAGACCCACGCCGATCCCTTG 60 consensus_3799#1 ------------------------------------------------------------ consensus_3799#0 CGCGCCGCCACCAGGGCCCTCTCCGCCGCTCCACAGCGTCGCCAGCTGATAGTCCCGAGG 120 consensus_3799#1 ------------------------------------------------------------ consensus_3799#0 AACCCCCCCCCCCCCCGCCCCCCGGGTATCGTCCGCGGCTTCCACCGATCCCTCTCCCCT 180 consensus_3799#1 ------------------------------------------------------------ consensus_3799#0 TCTCGCATGCACCGCGCCGCCACACATCCTTCTTAGATACCTAGACCGAGCGCTCGCCAT 240 consensus_3799#1 ------------------------------------------------------------ consensus_3799#0 CGCCGTCACGCCGATCCTCCGCCTCTCGTGTTGCCGACGCCCCGCCATTGCCCGCATCGA 300 consensus_3799#1 ------------------------------------------------------------ consensus_3799#0 TCGGCGCCACACATAGGTGCTGCCTTCGTGGCTTAGTGCCGCCTGGGAGACGATATCCGC 360 consensus_3799#1 ------------------------------------------------------------ consensus_3799#0 GAAGTACGTGATGCACTGATGCACCCCTCTGCTGATGACCACCGGGACAACCTATGCGGA 420 consensus_3799#1 ------------------------------------------------------------ consensus_3799#0 GCTGCGTAGCACGCCCCCCTTTCCCCACCGCTGCCTCTTTCCCCAACGACTTCACTGTTT 480 consensus_3799#1 ------------------------------------------------------------ consensus_3799#0 TCTAGATCTGTGACGCTTGGATGTTGACGACGACGCTGTCACGGGCTCACGGCGCTCGGC 540 consensus_3799#1 ------------------------------------------------------------ consensus_3799#0 CATGTCTGGGATGTGCAAGCCAGTTTCCCCTGCTCGATGGGCGTCATGTCCAGGGATAGC 600 consensus_3799#1 ------------------------------------------------------------ consensus_3799#0 TGATGCGGCAGGACAACTGGTTAAGGGAAATATAAAGCACCTGCTGCATATGAGGAGCAC 660 consensus_3799#1 ------------------------------------------------------------ consensus_3799#0 CAAAAGTAATATGTAGAAGGCCGTGTGTGGAATTTTGCTACAAACGCAAGATTTCTGCAG 720 consensus_3799#1 ------------------------------------------------------------ consensus_3799#0 TGGAATTTGGTTGTGTTTCTTCATCTACTGGTTGGATGCGGAAGCTTATCATGCAGTAGC 780 consensus_3799#1 ------------------------------------------------------------ consensus_3799#0 CAAATTGCTGAAAAGTAGAAACATTGGTATTCAGGCGAAGGTATTCCAACTTTACTTTTG 840 consensus_3799#1 ------GCAGCCACCGTGTATTGATCCGATCCATGTGTGACCCTCTTGATCCCAGGCACT 54 ** * * * * * ** ** * * * * * consensus_3799#0 GGTAGTTTGTGAATATGGGTTCATTTATGCAAACCAGAAGTGGAAGTGGGACTCATAAGA 900 consensus_3799#1 AAAAATTTATAGCGGTGACTTT-TTTCGGTGGATTAATTTGTTAAATCAAATACCACATT 113 * *** * ** ** *** * * * ** * * * * consensus_3799#0 TATTAGTGTATAATCTGCGATACATGTACTTGAAGTGGAAGTGAATGGCATAATGGCTTT 960 consensus_3799#1 TATTAAGGTAAGGTCAGGAAGGCTGTGGCTTCCACTTGATTGGTACTCCATAATAGTGCC 173 ***** *** ** * * * *** * * ** * * ****** * consensus_3799#0 GCTTAAAATTAGTTTCAATATGGCATGATACGAGATGCCATTGTCAGGACACTTATTTAA 1020 consensus_3799#1 AAGTAAAATCAGTCTCACTCTGTAGTGGTAGTTGA-ATGAAGTTCAG----TTCCTTACA 228 ****** *** *** * ** ** ** ** * **** * ** * consensus_3799#0 GCATGCCATTGCATGATATATATATCTGTTCTTCACATCCAGTACACCGGCAGGGGAAGA 1080 consensus_3799#1 GTAT-TTGTTGCTTTTCAGATTTTTGTTTACTTCTCATTCTGT-------CAGACCAA-- 278 * ** **** * * ** * * * * **** *** * ** *** ** consensus_3799#0 AGAGTTATATGCAGCCCATTTAATTTCTAAGATTTTTGTAGACAGCATCAGATAGTACTG 1140 consensus_3799#1 ATCATTCTATAGAAGAAAC--AATAGCACATATTTTATTAGCCTGTA-CAGAAACTTGCC 335 * ** *** * * *** * * ***** *** * * * **** * * consensus_3799#0 TTTGTTGTTTGCCATGGAGGTGCGGCAGCAGGGCAAGTAGGAACACATGTATACTCCATT 1200 consensus_3799#1 TTTGCAGT--GACATGGAA-TGTACTGGTACAATCAATA----CATA-GTGTAATGAGAT 387 **** ** * ****** ** * * * ** ** * ** ** * * consensus_3799#0 CCAAACTTATAACTTCACTAGGCCATGCAAACTTGGATAAAATAAGTTAAGTATTGGATG 1260 consensus_3799#1 GTATATTTAAGAT-----TAGGGCCTGGAATGTGTGAGAAGTAAAGTGGATTGGGACATG 442 * * *** * **** * ** ** * ** ** **** * * *** consensus_3799#0 GATGGAAGTTGCTTCTATCTATACTATAAAAAACCCTTGTAGCTGATTCGGTGTGGGTTG 1320 consensus_3799#1 GTCTGAA------TCCAACGAT-CTGAAAATGAATGTTAGGGAAGATAAACATACAAATA 495 * *** ** * * ** ** *** * ** * *** * consensus_3799#0 TTGCGCCCCTCGAAGGTACTCTTGGCAGCCACCGTGTATTGATCTGATCGTCTTGATCAC 1380 consensus_3799#1 TTA--------------------------------------------------------- 498 ** consensus_3799#0 AGACACTGAAACTTTATAGCGGTGACTTTTTTCGGTGGATTAATTTGTTAAATCAAATAC 1440 consensus_3799#1 ------------------------------------------------------------ consensus_3799#0 CACAT 1445 consensus_3799#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||