These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_38#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1523 fasta sequence [ACTCACTCACCTCACCTCTGCCTCTGCTCTTCCTCCAAGAACCTAACCACGCCCACCGCCCACCACGGTGGCTCGCCGGCGCCGGCCGCCGCGGATCACGTTCCAGCCCCAGCTCAGCTCGGAGGTAGAGCATGTTAATGCCATTCTGGAACAAGTATATGTGAAGGGTTTCTTGGTCAAATTTCTGGAATACTTTGATGGAATGCAACAGAGAGGAGGCCTTCAGGGCCAGAGAAATTGCTGTAAAGAAGCTGGAAAATAGAGACTTTGTCGGCGCCCGCAAGATCGCGATTAAAGCTCAAAGGCTTTTTCCTGAGCTTGAGAACATCTCCCAGCTGTTAATTATCTGTGAAGTTCTTTCTTCAGCTGAGGCAAAGATCTCTGGAGAGTTGGATTGGTATGGTGTTCTTCAGGTGGATAAAATGGCAGACGAAACAGTAATAAGAAGGCAATACAACATACTTTCGTATCGGCTTCATCCTGATAATAATACTCTGTTTGGTGCCGAAGCCGCATTCAGGTTTGTTTCAGAAGCTCATGCAATATTGAGTGATCATGTGAAGAGGTCTCTGTATGACACCAAAAGACAGTGTGCTTCAAGAGAAGTGGCCAAGGAGGCTACACAGCCACCAAACAAGACTGATTCAAACATAAGCAATGTGGCTGGATCCATGACACCATCTGCTTCTGTGCTTGTATTCTGGACAATATGTCCGCATTGTCAGAAGCGATTTCTGTACTACCAACGGAACTTTTTGGCCCGCTGCAGTGATTGTGGTAAGAGGTTCTTCGCAATCAAACTGCATGAGCAGTCTGTTCCCTCGAGAATCCTATCAACTGCTGCAAAAAAGTCTCAGCTTTCAACGTCAGAAATGTTATCATTTCAACGAAGTAGTGTCCCCAATCAGCATCAACAAGGTAAATGCTTGGTTACAAGAAGGCGAGGCCATTCAATTTTCAGCAATGAAGCAAACTAAATCTCACATCTGCGCTTTTGACAATGATAAGCCTGGAACTTTGGTACCAAAGAGTTCTGATCTTAAGTCCATCTCAGTTAAGAATTTGACTAGAGAAAGTGCACCTGCAGAGGAAAATGCTGCAGAATCATCCAGTCTTCAGATATTGGGTAAGAGAAAGCTTTATGTTACCTCTGACAGCAGCCATGGTATGAACTCCAATATTAAGAGGCAAAGGAAGTATACTTGTCCATCCGATTCTGATTCGAGTAATGAGCAGATATGTAATGATGATGTTGCTGTTCCTGATAATCAATCTACTGGACAGAATGTTCCCATCGAAGTGGACAGTGAAGAGGAAAGAAATGCAAGACATGGAAGCAACCAACAAACTTGTAAGAAAAATGTTACTGATACTGCTTCTCAGAAGTCTGTCAATTCGGTGATTGCCTACCCTTATCCAGACTTTGATTTTTGCAAGTCCAGAGATGCTGAAGAAACTGATGAATCCATAAAACAATATGGCTGGGCTGGTGACATGGCAGGTAAAGGCCTGGTGACAAGAAG] [+] EMBL AK121330 [ACTCACTCACCTCACCTCTGCCTCTGCTCTTCCTCCAAGAACCTAACCACGCCCACCGCCCACCACGGTGGCTCGCCGGCGCCGGCCGCCGCGGATCACGTTCCAGCCCCAGCTCAGCTCGGAGGTAGAGCATGTTAATGCCATTCTGGAACAAGTATATGTGAAGGGTTTCTTGGTCAAATTTCTGGAATACTTTGATGGAATGCAACAGAGAGGAGGCCTTCAGGGCCAGAGAAATTGCTGTAAAGAAGCTGGAAAATAGAGACTTTGTCGGCGCCCGCAAGATCGCGATTAAAGCTCAAAGGCTTTTTCCTGAGCTTGAGAACATCTCCCAGCTGTTAATTATCTGTGAAGTTCTTTCTTCAGCTGAGGCAAAGATCTCTGGAGAGTTGGATTGGTATGGTGTTCTTCAGGTGGATAAAATGGCAGACGAAACAGTAATAAGAAGGCAATACAACATACTTTCGTATCGGCTTCATCCTGATAATAATACTCTGTTTGGTGCCGAAGCCGCATTCAGGTTTGTTTCAGAAGCTCATGCAATATTGAGTGATCATGTGAAGAGGTCTCTGTATGACACCAAAAGACAGTGTGCTTCAAGAGAAGTGGCCAAGGAGGCTACACAGCCACCAAACAAGACTGATTCAAACATAAGCAATGTGGCTGGATCCATGACACCATCTGCTTCTGTGCTTGTATTCTGGACAATATGTCCGCATTGTCAGAAGCGATTTCTGTACTACCAACGGAACTTTTTGGCCCGCTGCAGTGATTGTGGTAAGAGGTTCTTCGCAATCAAACTGCATGAGCAGTCTGTTCCCTCGAGAATCCTATCAACTGCTGCAAAAAAGTCTCAGCTTTCAACGTCAGAAATGTTATCATTTCAACGAAGTAGTGTCCCCAATCAGCATCAACAAGGTAAATGCTTGGTTACAAGAAGGCGAGGCCATTCAATTTTCAGCAATGAAGCAAACTAAATCTCACATCTGCGCTTTTGACAATGATAAGCCTGGAACTTTGGTACCAAAGAGTTCTGATCTTAAGTCCATCTCAGTTAAGAATTTGACTAGAGAAAGTGCACCTGCAGAGGAAAATGCTGCAGAATCATCCAGTCTTCAGATATTGGGTAAGAGAAAGCTTTATGTTACCTCTGACAGCAGCCATGGTATGAACTCCAATATTAAGAGGCAAAGGAAGTATACTTGTCCATCCGATTCTGATTCGAGTAATGAGCAGATATGTAATGATGATGTTGCTGTTCCTGATAATCAATCTACTGGACAGAATGTTCCCATCGAAGTGGACAGTGAAGAGGAAAGAAATGCAAGACATGGAAGCAACCAACAAACTTGTAAGAAAAATGTTACTGATACTGCTTCTCAGAAGTCTGTCAATTCGGTGATTGCCTACCCTTATCCAGACTTTGATTTTTGCAAGTCCAGAGATGCTGAAGAAACTGATGAATCCATAAAACAATATGGCTGGGCTGGTGACATGGCAGGTAAAGGCCTGGTGACAAGAAG] consensusID : consensus_38#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 954 fasta sequence [TGTGGGAATTTCTAGCCCCCACAGCGAACGTAGTGCCTTTTTCTCAAAGCTGTTTTAATAATATAATAGAATAATAGATAGATATATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATGTCCGCATTGTCAGAAGCAATCTCTGTACTACCAACGGAACTTTTTGGCCCGCTGCAATGATTGTGGTAAGTTCTTTGCAATCAAACTGCGTGAGCAGTCTGTGCCCTCAAGAATCCTATCAACTGCTGCAAAAAGGTCTCAGCTTTCACCGTCAGAAATGTTCTCATTTCAACGAAGTAGTGTCCCCAATCAGCATGGTAATCAGCATCAACAAGGTAAATGCTTGGTGACAAGAAGCGAGGCCATTCAATTTTCAGCAATGAAGCAAACTAAATCTCACATCTGCTCTTCTGACAATGATAAGCCTGGAACTTTGGTACCAAAGAGTTCTGATCTAAACTCCATCTCTGTTAAGAATTTGACTAGAGAAAGTGCACCTGCAGAGGAAAATGCTGCAGAATCATCCAGTTTTCAGATATTGGGTAAGAGAAAGCTCTATGTTACCTCTGACAGCAGCCATGGTATGAACTCCAATATTAAGAGGCAAAGGAAGTATATTTGTCCATCCGATTCTGATTCGAGTAATGAGCAGATATGTAATGATGATGTTGCTGTTCCTGATAATCAATCTACTGGACAGAATGTTCCCATCGAAGTGGACAGTGAAGAGGAAGGAAATGCAAGACATGGAGGCAACCAACAAACTTGTCAGAAAAATGTTAATGATACTGCTGCTCAGAAGTATCTCAATTCAGTGATTGCCTACCCTTATCCAGACTTTGATTTTGGCAAATCCAGAGATACTGAAGAAACTGATGAATCCATAAAACAGTATGGCTGGGCTGGTGACATGGAAGGTAAAGGCCTGGTGACAAGAAGT] [-] EMBL AK064591 [TGTGGGAATTTCTAGCCCCCACAGCGAACGTAGTGCCTTTTTCTCAAAGCTGTTTTAATAATATAATAGAATAATAGATAGATATATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATGTCCGCATTGTCAGAAGCAATCTCTGTACTACCAACGGAACTTTTTGGCCCGCTGCAATGATTGTGGTAAGTTCTTTGCAATCAAACTGCGTGAGCAGTCTGTGCCCTCAAGAATCCTATCAACTGCTGCAAAAAGGTCTCAGCTTTCACCGTCAGAAATGTTCTCATTTCAACGAAGTAGTGTCCCCAATCAGCATGGTAATCAGCATCAACAAGGTAAATGCTTGGTGACAAGAAGCGAGGCCATTCAATTTTCAGCAATGAAGCAAACTAAATCTCACATCTGCTCTTCTGACAATGATAAGCCTGGAACTTTGGTACCAAAGAGTTCTGATCTAAACTCCATCTCTGTTAAGAATTTGACTAGAGAAAGTGCACCTGCAGAGGAAAATGCTGCAGAATCATCCAGTTTTCAGATATTGGGTAAGAGAAAGCTCTATGTTACCTCTGACAGCAGCCATGGTATGAACTCCAATATTAAGAGGCAAAGGAAGTATATTTGTCCATCCGATTCTGATTCGAGTAATGAGCAGATATGTAATGATGATGTTGCTGTTCCTGATAATCAATCTACTGGACAGAATGTTCCCATCGAAGTGGACAGTGAAGAGGAAGGAAATGCAAGACATGGAGGCAACCAACAAACTTGTCAGAAAAATGTTAATGATACTGCTGCTCAGAAGTATCTCAATTCAGTGATTGCCTACCCTTATCCAGACTTTGATTTTGGCAAATCCAGAGATACTGAAGAAACTGATGAATCCATAAAACAGTATGGCTGGGCTGGTGACATGGAAGGTAAAGGCCTGGTGACAAGAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_38#0 ACTCACTCACCTCACCTCTGCCTCTGCTCTTCCTCCAAGAACCTAACCACGCCCACCGCC 60 consensus_38#1 ------------------------------------------------------------ consensus_38#0 CACCACGGTGGCTCGCCGGCGCCGGCCGCCGCGGATCACGTTCCAGCCCCAGCTCAGCTC 120 consensus_38#1 ------------------------------------------------------------ consensus_38#0 GGAGGTAGAGCATGTTAATGCCATTCTGGAACAAGTATATGTGAAGGGTTTCTTGGTCAA 180 consensus_38#1 ------------------------------------------------------------ consensus_38#0 ATTTCTGGAATACTTTGATGGAATGCAACAGAGAGGAGGCCTTCAGGGCCAGAGAAATTG 240 consensus_38#1 ------------------------------------------------------------ consensus_38#0 CTGTAAAGAAGCTGGAAAATAGAGACTTTGTCGGCGCCCGCAAGATCGCGATTAAAGCTC 300 consensus_38#1 ------------------------------------------------------------ consensus_38#0 AAAGGCTTTTTCCTGAGCTTGAGAACATCTCCCAGCTGTTAATTATCTGTGAAGTTCTTT 360 consensus_38#1 ------------------------------------------------------------ consensus_38#0 CTTCAGCTGAGGCAAAGATCTCTGGAGAGTTGGATTGGTATGGTGTTCTTCAGGTGGATA 420 consensus_38#1 ------------------------------------------------------------ consensus_38#0 AAATGGCAGACGAAACAGTAATAAGAAGGCAATACAACATACTTTCGTATCGGCTTCATC 480 consensus_38#1 ------------------------------------------------------------ consensus_38#0 CTGATAATAATACTCTGTTTGGTGCCGAAGCCGCATTCAGGTTTGTTTCAGAAGCTCATG 540 consensus_38#1 ------------------------------------------------------------ consensus_38#0 CAATATTGAGTGATCATGTGAAGAGGTCTCTGTATGACACCAAAAGACAGTGTGCTTCAA 600 consensus_38#1 ----------------TGTGGGAATTTCTAGCCCCCACAGCGAACG-TAGTGCCTTT--- 40 **** * *** *** * ** * **** ** consensus_38#0 GAGAAGTGGCCAAGGAGGCTACACAGCCACCAAACAAGACTGATTCAAACATAAGCAATG 660 consensus_38#1 ------TTCTCAAAGCTGTTTTAAT-------AATATAATAGAATAATAGATAGATA-TA 86 * *** * * * * ** * * ** * * * *** * * consensus_38#0 TGGCTGGATCCATGACACCATCTGCTTCTGTGCTTGTATTCTGGACAATATGTCCGCATT 720 consensus_38#1 TAGATAGATAGATAG----ATAGATAGATAGATAGATAGATAGATAGATATGTCCGCATT 142 * * * *** ** ** * ** * ************* consensus_38#0 GTCAGAAGCGATTTCTGTACTACCAACGGAACTTTTTGGCCCGCTGCAGTGATTGTGGTA 780 consensus_38#1 GTCAGAAGCAATCTCTGTACTACCAACGGAACTTTTTGGCCCGCTGCAATGATTGTGGTA 202 ********* ** *********************************** *********** consensus_38#0 AGAGGTTCTTCGCAATCAAACTGCATGAGCAGTCTGTTCCCTCGAGAATCCTATCAACTG 840 consensus_38#1 A---GTTCTTTGCAATCAAACTGCGTGAGCAGTCTGTGCCCTCAAGAATCCTATCAACTG 259 * ****** ************* ************ ***** **************** consensus_38#0 CTGCAAAAAAGTCTCAGCTTTCAACGTCAGAAATGTTATCATTTCAACGAAGTAGTGTCC 900 consensus_38#1 CTGCAAAAAGGTCTCAGCTTTCACCGTCAGAAATGTTCTCATTTCAACGAAGTAGTGTCC 319 ********* ************* ************* ********************** consensus_38#0 CCAATCAGCAT------------CAACAAGGTAAATGCTTGGTTACAAGAAGGCGAGGCC 948 consensus_38#1 CCAATCAGCATGGTAATCAGCATCAACAAGGTAAATGCTTGGTGACAAGAAG-CGAGGCC 378 *********** ******************** ******** ******* consensus_38#0 ATTCAATTTTCAGCAATGAAGCAAACTAAATCTCACATCTGCGCTTTTGACAATGATAAG 1008 consensus_38#1 ATTCAATTTTCAGCAATGAAGCAAACTAAATCTCACATCTGCTCTTCTGACAATGATAAG 438 ****************************************** *** ************* consensus_38#0 CCTGGAACTTTGGTACCAAAGAGTTCTGATCTTAAGTCCATCTCAGTTAAGAATTTGACT 1068 consensus_38#1 CCTGGAACTTTGGTACCAAAGAGTTCTGATCTAAACTCCATCTCTGTTAAGAATTTGACT 498 ******************************** ** ******** *************** consensus_38#0 AGAGAAAGTGCACCTGCAGAGGAAAATGCTGCAGAATCATCCAGTCTTCAGATATTGGGT 1128 consensus_38#1 AGAGAAAGTGCACCTGCAGAGGAAAATGCTGCAGAATCATCCAGTTTTCAGATATTGGGT 558 ********************************************* ************** consensus_38#0 AAGAGAAAGCTTTATGTTACCTCTGACAGCAGCCATGGTATGAACTCCAATATTAAGAGG 1188 consensus_38#1 AAGAGAAAGCTCTATGTTACCTCTGACAGCAGCCATGGTATGAACTCCAATATTAAGAGG 618 *********** ************************************************ consensus_38#0 CAAAGGAAGTATACTTGTCCATCCGATTCTGATTCGAGTAATGAGCAGATATGTAATGAT 1248 consensus_38#1 CAAAGGAAGTATATTTGTCCATCCGATTCTGATTCGAGTAATGAGCAGATATGTAATGAT 678 ************* ********************************************** consensus_38#0 GATGTTGCTGTTCCTGATAATCAATCTACTGGACAGAATGTTCCCATCGAAGTGGACAGT 1308 consensus_38#1 GATGTTGCTGTTCCTGATAATCAATCTACTGGACAGAATGTTCCCATCGAAGTGGACAGT 738 ************************************************************ consensus_38#0 GAAGAGGAAAGAAATGCAAGACATGGAAGCAACCAACAAACTTGTAAGAAAAATGTTACT 1368 consensus_38#1 GAAGAGGAAGGAAATGCAAGACATGGAGGCAACCAACAAACTTGTCAGAAAAATGTTAAT 798 ********* ***************** ***************** ************ * consensus_38#0 GATACTGCTTCTCAGAAGTCTGTCAATTCGGTGATTGCCTACCCTTATCCAGACTTTGAT 1428 consensus_38#1 GATACTGCTGCTCAGAAGTATCTCAATTCAGTGATTGCCTACCCTTATCCAGACTTTGAT 858 ********* ********* * ******* ****************************** consensus_38#0 TTTTGCAAGTCCAGAGATGCTGAAGAAACTGATGAATCCATAAAACAATATGGCTGGGCT 1488 consensus_38#1 TTTGGCAAATCCAGAGATACTGAAGAAACTGATGAATCCATAAAACAGTATGGCTGGGCT 918 *** **** ********* **************************** ************ consensus_38#0 GGTGACATGGCAGGTAAAGGCCTGGTGACAAGAAG- 1523 consensus_38#1 GGTGACATGGAAGGTAAAGGCCTGGTGACAAGAAGT 954 ********** ************************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||