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Oryza sativa
cluster # 380 cluster # 380       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_380#0 length = 1435 sequences # 1  
consensus_380#1 length = 629 sequences # 1  

consensusID : consensus_380#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1435
fasta sequence
                              [GCTTCTCCACTAGGGTTTCTCGCCGCCGCCGCCGCCGCTCGCCGTCGCCGTCGCCGCCGGATCAGAGATGAGCGCATCCAGGCCGGATCACCGGCGGCACCACCCGCCGTTTCTCCGGGACCTCTCGTCGCCGATCTCCTCGGCCGTGCGGCTGCCCCCGGCCTCCCTCCGCCGCGAGACGCAAGGTTCCACCACCCCGCCGCCGCCGCCGCCGCCGCTGCTGTTCCTCGACGACCTCTCCCACCACTCCCCCTCGCCGAGGCCCGCCACCCCACCTCAGGCGGCGGCCATGAGCCCCTCGCCTCCCCCTCCCCACCGCGGCGGCCTCTTCTCCTCCACCCCGCTGCGCTCCAATGGGTCCCCCTCCCCGGCCGCGTGGTGGTCCTCCTCGAGGGAGGAGATGGCCAGGGAGGGCTCGCCGGTCGATGGTGTCGTGCAGCCGCAGCAGCAGCCGTCTCCGACGACGGCGTCTGGGCAGCAGTCGCAGCAGCAGAAGGTGACGCTCATCACGCTGCCGCCACCCAGGGAAGTTGCGCGGCCGGAGATGCCGAAGGATTCGACACCTTCCGCTGGCCGTGTCGACGAGGAGGAGTGGGTCACCGTTTTTGGTTTTTTACCTGGCGATACCAACTTGGTACTGAGAGAATTTGAGAAGTGTGGTATAGTCTTGAGACATGTCCCTGGTCCAAGGGATGCGAACTGGATGCATATCCTGTATCAGAGCCGGCATGATGCACAAAAAGCTCTCACCAAGCACGGTCAACAGTTAAACAGTGTTCTTATCATCGGTGTGAAGCAAGTGGACCCATGGCAGCGGCAGTACCTGAATGAGAAGACAAATGAGAACTTTCAAGTTGGTGCAACAGATCCATTTCCATCACAGCATGTAGCACCAAGTTCATTTACAACTAGAAATGCACTAGCACCTTTGCCTAGCAATTCTATGCCAAATGGAATCGGCAACGGGAGTGGCCGTGGTGCTTCGGGGGCCATTGCTTCACCCACAAAATCAGTATTGTCCAAAGTTATGGACCTGATGTTCGGCCTCTAAATCCTGTTACCAAGTACTGGCTGTTATTCTTTTGGCTGTTCCAAGGCAAATCGAGGATTACTGATCATAACATTTCTTATTGTTGGGTTTTTCGCACCGAAGTGACATTATTGGTCCACAGAATCTGTATTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGAGCTAGTGTTGATGGTGTTTCGCTCGTAAGCATTCAGTGGATCATCCAATACCAAACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATATTGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGACATGAGAGCCTATATATATGTTG]

[+] EMBL AK068290             [GCTTCTCCACTAGGGTTTCTCGCCGCCGCCGCCGCCGCTCGCCGTCGCCGTCGCCGCCGGATCAGAGATGAGCGCATCCAGGCCGGATCACCGGCGGCACCACCCGCCGTTTCTCCGGGACCTCTCGTCGCCGATCTCCTCGGCCGTGCGGCTGCCCCCGGCCTCCCTCCGCCGCGAGACGCAAGGTTCCACCACCCCGCCGCCGCCGCCGCCGCCGCTGCTGTTCCTCGACGACCTCTCCCACCACTCCCCCTCGCCGAGGCCCGCCACCCCACCTCAGGCGGCGGCCATGAGCCCCTCGCCTCCCCCTCCCCACCGCGGCGGCCTCTTCTCCTCCACCCCGCTGCGCTCCAATGGGTCCCCCTCCCCGGCCGCGTGGTGGTCCTCCTCGAGGGAGGAGATGGCCAGGGAGGGCTCGCCGGTCGATGGTGTCGTGCAGCCGCAGCAGCAGCCGTCTCCGACGACGGCGTCTGGGCAGCAGTCGCAGCAGCAGAAGGTGACGCTCATCACGCTGCCGCCACCCAGGGAAGTTGCGCGGCCGGAGATGCCGAAGGATTCGACACCTTCCGCTGGCCGTGTCGACGAGGAGGAGTGGGTCACCGTTTTTGGTTTTTTACCTGGCGATACCAACTTGGTACTGAGAGAATTTGAGAAGTGTGGTATAGTCTTGAGACATGTCCCTGGTCCAAGGGATGCGAACTGGATGCATATCCTGTATCAGAGCCGGCATGATGCACAAAAAGCTCTCACCAAGCACGGTCAACAGTTAAACAGTGTTCTTATCATCGGTGTGAAGCAAGTGGACCCATGGCAGCGGCAGTACCTGAATGAGAAGACAAATGAGAACTTTCAAGTTGGTGCAACAGATCCATTTCCATCACAGCATGTAGCACCAAGTTCATTTACAACTAGAAATGCACTAGCACCTTTGCCTAGCAATTCTATGCCAAATGGAATCGGCAACGGGAGTGGCCGTGGTGCTTCGGGGGCCATTGCTTCACCCACAAAATCAGTATTGTCCAAAGTTATGGACCTGATGTTCGGCCTCTAAATCCTGTTACCAAGTACTGGCTGTTATTCTTTTGGCTGTTCCAAGGCAAATCGAGGATTACTGATCATAACATTTCTTATTGTTGGGTTTTTCGCACCGAAGTGACATTATTGGTCCACAGAATCTGTATTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGAGCTAGTGTTGATGGTGTTTCGCTCGTAAGCATTCAGTGGATCATCCAATACCAAACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATATTGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGACATGAGAGCCTATATATATGTTG]


>consensus_380#0 GCTTCTCCACTAGGGTTTCTCGCCGCCGCCGCCGCCGCTCGCCGTCGCCGTCGCCGCCGG ATCAGAGATGAGCGCATCCAGGCCGGATCACCGGCGGCACCACCCGCCGTTTCTCCGGGA CCTCTCGTCGCCGATCTCCTCGGCCGTGCGGCTGCCCCCGGCCTCCCTCCGCCGCGAGAC GCAAGGTTCCACCACCCCGCCGCCGCCGCCGCCGCCGCTGCTGTTCCTCGACGACCTCTC CCACCACTCCCCCTCGCCGAGGCCCGCCACCCCACCTCAGGCGGCGGCCATGAGCCCCTC GCCTCCCCCTCCCCACCGCGGCGGCCTCTTCTCCTCCACCCCGCTGCGCTCCAATGGGTC CCCCTCCCCGGCCGCGTGGTGGTCCTCCTCGAGGGAGGAGATGGCCAGGGAGGGCTCGCC GGTCGATGGTGTCGTGCAGCCGCAGCAGCAGCCGTCTCCGACGACGGCGTCTGGGCAGCA GTCGCAGCAGCAGAAGGTGACGCTCATCACGCTGCCGCCACCCAGGGAAGTTGCGCGGCC GGAGATGCCGAAGGATTCGACACCTTCCGCTGGCCGTGTCGACGAGGAGGAGTGGGTCAC CGTTTTTGGTTTTTTACCTGGCGATACCAACTTGGTACTGAGAGAATTTGAGAAGTGTGG TATAGTCTTGAGACATGTCCCTGGTCCAAGGGATGCGAACTGGATGCATATCCTGTATCA GAGCCGGCATGATGCACAAAAAGCTCTCACCAAGCACGGTCAACAGTTAAACAGTGTTCT TATCATCGGTGTGAAGCAAGTGGACCCATGGCAGCGGCAGTACCTGAATGAGAAGACAAA TGAGAACTTTCAAGTTGGTGCAACAGATCCATTTCCATCACAGCATGTAGCACCAAGTTC ATTTACAACTAGAAATGCACTAGCACCTTTGCCTAGCAATTCTATGCCAAATGGAATCGG CAACGGGAGTGGCCGTGGTGCTTCGGGGGCCATTGCTTCACCCACAAAATCAGTATTGTC CAAAGTTATGGACCTGATGTTCGGCCTCTAAATCCTGTTACCAAGTACTGGCTGTTATTC TTTTGGCTGTTCCAAGGCAAATCGAGGATTACTGATCATAACATTTCTTATTGTTGGGTT TTTCGCACCGAAGTGACATTATTGGTCCACAGAATCTGTATTGTACCGAGCCTAAGATCA TCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGAGCTAGTGTTGATGGTGTTTCG CTCGTAAGCATTCAGTGGATCATCCAATACCAAACCATATGGAAATTATGTCCATGGAAA TATCATCAAGTATCATCCTGGTTTTATACATATTGAAATGATTCTGACCTGTATGTGAAT GCATCTTAGTAAATTGTTTTCGAATGATTTGACATGAGAGCCTATATATATGTTG



consensusID : consensus_380#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence
                              [CCTACCCANNCNNNNNTACCCCCNCCACANNAACAACCNNCNCCGNNNCNCANNCNANNGCANCNNCNNNAANCGANNNNNNNNNNNNNNNNNNNNNNANNNNATAATATATTTTTCTCCCCCACCCGGGGGGGGGGGCCCCCTGGGGTTTTTTTCAGGGGGCCCTTGCTTTCACCCCCCAAAAATCCGGTTTTGGTCCAAAATTTAAGGCCCTAAATTGTCCGCCCTTCTAAATCCTGTTACAAAGTACTGGCTGTATTCTTTGGCTTGTTCCAAGGCCAAATTCCGAGGAATTCCTGGATCATAACCTTTCCTTATTGTTGGGTTTTTCGCCCCGAAGTGACATTATTGGTCCACAGAATCTGTATTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGAAGCTAAGTGTTGNNNATGNNGTGTTTCGCTCGTAAGCATTCAGTGGGTCATCCAATACCAAACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATATTGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGACATGAGAGCCAAAAAAAAAAAAA]

[-] EMBL CA760246             [CCTACCCANNCNNNNNTACCCCCNCCACANNAACAACCNNCNCCGNNNCNCANNCNANNGCANCNNCNNNAANCGANNNNNNNNNNNNNNNNNNNNNNANNNNATAATATATTTTTCTCCCCCACCCGGGGGGGGGGGCCCCCTGGGGTTTTTTTCAGGGGGCCCTTGCTTTCACCCCCCAAAAATCCGGTTTTGGTCCAAAATTTAAGGCCCTAAATTGTCCGCCCTTCTAAATCCTGTTACAAAGTACTGGCTGTATTCTTTGGCTTGTTCCAAGGCCAAATTCCGAGGAATTCCTGGATCATAACCTTTCCTTATTGTTGGGTTTTTCGCCCCGAAGTGACATTATTGGTCCACAGAATCTGTATTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGAAGCTAAGTGTTGNNNATGNNGTGTTTCGCTCGTAAGCATTCAGTGGGTCATCCAATACCAAACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATATTGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGACATGAGAGCCAAAAAAAAAAAAA]


>consensus_380#1 CCTACCCANNCNNNNNTACCCCCNCCACANNAACAACCNNCNCCGNNNCNCANNCNANNG CANCNNCNNNAANCGANNNNNNNNNNNNNNNNNNNNNNANNNNATAATATATTTTTCTCC CCCACCCGGGGGGGGGGGCCCCCTGGGGTTTTTTTCAGGGGGCCCTTGCTTTCACCCCCC AAAAATCCGGTTTTGGTCCAAAATTTAAGGCCCTAAATTGTCCGCCCTTCTAAATCCTGT TACAAAGTACTGGCTGTATTCTTTGGCTTGTTCCAAGGCCAAATTCCGAGGAATTCCTGG ATCATAACCTTTCCTTATTGTTGGGTTTTTCGCCCCGAAGTGACATTATTGGTCCACAGA ATCTGTATTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGG TCTGGAAGCTAAGTGTTGNNNATGNNGTGTTTCGCTCGTAAGCATTCAGTGGGTCATCCA ATACCAAACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTA TACATATTGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATG ATTTGACATGAGAGCCAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_380#0      GCTTCTCCACTAGGGTTTCTCGCCGCCGCCGCCGCCGCTCGCCGTCGCCGTCGCCGCCGG 60
consensus_380#1      ------------------------------------------------------------
                                                                                 

consensus_380#0      ATCAGAGATGAGCGCATCCAGGCCGGATCACCGGCGGCACCACCCGCCGTTTCTCCGGGA 120
consensus_380#1      ------------------------------------------------------------
                                                                                 

consensus_380#0      CCTCTCGTCGCCGATCTCCTCGGCCGTGCGGCTGCCCCCGGCCTCCCTCCGCCGCGAGAC 180
consensus_380#1      ------------------------------------------------------------
                                                                                 

consensus_380#0      GCAAGGTTCCACCACCCCGCCGCCGCCGCCGCCGCCGCTGCTGTTCCTCGACGACCTCTC 240
consensus_380#1      ------------------------------------------------------------
                                                                                 

consensus_380#0      CCACCACTCCCCCTCGCCGAGGCCCGCCACCCCACCTCAGGCGGCGGCCATGAGCCCCTC 300
consensus_380#1      ------------------------------------------------------------
                                                                                 

consensus_380#0      GCCTCCCCCTCCCCACCGCGGCGGCCTCTTCTCCTCCACCCCGCTGCGCTCCAATGGGTC 360
consensus_380#1      ------------------------------------------------------------
                                                                                 

consensus_380#0      CCCCTCCCCGGCCGCGTGGTGGTCCTCCTCGAGGGAGGAGATGGCCAGGGAGGGCTCGCC 420
consensus_380#1      ------------------------------------------------------------
                                                                                 

consensus_380#0      GGTCGATGGTGTCGTGCAGCCGCAGCAGCAGCCGTCTCCGACGACGGCGTCTGGGCAGCA 480
consensus_380#1      ------------------------------------------------------------
                                                                                 

consensus_380#0      GTCGCAGCAGCAGAAGGTGACGCTCATCACGCTGCCGCCACCCAGGGAAGTTGCGCGGCC 540
consensus_380#1      ------------------------------------------------------------
                                                                                 

consensus_380#0      GGAGATGCCGAAGGATTCGACACCTTCCGCTGGCCGTGTCGACGAGGAGGAGTGGGTCAC 600
consensus_380#1      ------------------------------------------------------------
                                                                                 

consensus_380#0      CGTTTTTGGTTTTTTACCTGGCGATACCAACTTGGTACTGAGAGAATTTGAGAAGTGTGG 660
consensus_380#1      ------------------------------------------------------------
                                                                                 

consensus_380#0      TATAGTCTTGAGACATGTCCCTGGTCCAAGGGATGCGAACTGGATGCATATCCTGTATCA 720
consensus_380#1      ------------------------------------------------------------
                                                                                 

consensus_380#0      GAGCCGGCATGATGCACAAAAAGCTCTCACCAAGCACGGTCAACAGTTAAACAGTGTTCT 780
consensus_380#1      ------------------------------------------------------------
                                                                                 

consensus_380#0      TATCATCGGTGTGAAGCAAGTGGACCCATGGCAGCGGCAGTACCTGAATGAGAAGACAAA 840
consensus_380#1      --------------------------------------------------CCTACCCANN 10
                                                                          *  **  

consensus_380#0      TGAGAACTTTCAAGTTGGTGCAACAGATCCATTTCCATCACAGCATGTAGCACCAAGTTC 900
consensus_380#1      CNNNNNTACCCCCNCCACANNAACAACCNNCNCCGNNNCNCANNCNANNGCANCNNCNNN 70
                               *          ****             * **       *** *      

consensus_380#0      ATTTACAACTAGAAATGCACTAGCACCTTTGCCTAGCAAT-TCTATGCCAAATGGAATCG 959
consensus_380#1      AA--NCGANNNNNNNNNNNNNNNNNNNNNNANNNNATAATATATTTTTCTCCCCCACCCG 128
                     *    * *                             *** * * *  *      *  **

consensus_380#0      GCAACGGGAGTGGCC-GTGGTGCTTC---GGGGGCCATTGCTT----CACCCACAAAATC 1011
consensus_380#1      GGGGGGGGGGCCCCCTGGGGTTTTTTTCAGGGGGCCCTTGCTTTCACCCCCCAAAAATCC 188
                     *    *** *   ** * ***  **    ******* ******    * **** ***  *

consensus_380#0      AGTATTG-TCCAAAGTT-ATGGACCTGA--TGTTCGGCCT-CTAAATCCTGTTACCAAGT 1066
consensus_380#1      GGTTTTGGTCCAAAATTTAAGGCCCTAAATTGTCCGCCCTTCTAAATCCTGTTACAAAGT 248
                      ** *** ****** ** * ** *** *  *** ** *** ************** ****

consensus_380#0      ACTGGCTGTTATTCTTTTGGCTGTTCCAAGGCAAA---TCGAGGATTACT--GATCATAA 1121
consensus_380#1      ACTGGCTGT-ATTCTTTGGCTTGTTCCAAGGCCAAATTCCGAGGAATTCCTGGATCATAA 307
                     ********* ******* *  *********** **    ****** * *   ********

consensus_380#0      CATTTC-TTATTGTTGGGTTTTTCGCACCGAAGTGACATTATTGGTCCACAGAATCTGTA 1180
consensus_380#1      CCTTTCCTTATTGTTGGGTTTTTCGCCCCGAAGTGACATTATTGGTCCACAGAATCTGTA 367
                     * **** ******************* *********************************

consensus_380#0      TTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGA- 1239
consensus_380#1      TTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGAA 427
                     *********************************************************** 

consensus_380#0      GCTA-GTGTTGATG-----GTGTTTCGCTCGTAAGCATTCAGTGGATCATCCAATACCAA 1293
consensus_380#1      GCTAAGTGTTGNNNATGNNGTGTTTCGCTCGTAAGCATTCAGTGGGTCATCCAATACCAA 487
                     **** ******        ************************** **************

consensus_380#0      ACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATAT 1353
consensus_380#1      ACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATAT 547
                     ************************************************************

consensus_380#0      TGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGAC 1413
consensus_380#1      TGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGAC 607
                     ************************************************************

consensus_380#0      ATGAGAGCCTATATATATGTTG 1435
consensus_380#1      ATGAGAGCCAAAAAAAAAAAAA 629
                     ********* * * * *     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)