These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1435 fasta sequence [GCTTCTCCACTAGGGTTTCTCGCCGCCGCCGCCGCCGCTCGCCGTCGCCGTCGCCGCCGGATCAGAGATGAGCGCATCCAGGCCGGATCACCGGCGGCACCACCCGCCGTTTCTCCGGGACCTCTCGTCGCCGATCTCCTCGGCCGTGCGGCTGCCCCCGGCCTCCCTCCGCCGCGAGACGCAAGGTTCCACCACCCCGCCGCCGCCGCCGCCGCCGCTGCTGTTCCTCGACGACCTCTCCCACCACTCCCCCTCGCCGAGGCCCGCCACCCCACCTCAGGCGGCGGCCATGAGCCCCTCGCCTCCCCCTCCCCACCGCGGCGGCCTCTTCTCCTCCACCCCGCTGCGCTCCAATGGGTCCCCCTCCCCGGCCGCGTGGTGGTCCTCCTCGAGGGAGGAGATGGCCAGGGAGGGCTCGCCGGTCGATGGTGTCGTGCAGCCGCAGCAGCAGCCGTCTCCGACGACGGCGTCTGGGCAGCAGTCGCAGCAGCAGAAGGTGACGCTCATCACGCTGCCGCCACCCAGGGAAGTTGCGCGGCCGGAGATGCCGAAGGATTCGACACCTTCCGCTGGCCGTGTCGACGAGGAGGAGTGGGTCACCGTTTTTGGTTTTTTACCTGGCGATACCAACTTGGTACTGAGAGAATTTGAGAAGTGTGGTATAGTCTTGAGACATGTCCCTGGTCCAAGGGATGCGAACTGGATGCATATCCTGTATCAGAGCCGGCATGATGCACAAAAAGCTCTCACCAAGCACGGTCAACAGTTAAACAGTGTTCTTATCATCGGTGTGAAGCAAGTGGACCCATGGCAGCGGCAGTACCTGAATGAGAAGACAAATGAGAACTTTCAAGTTGGTGCAACAGATCCATTTCCATCACAGCATGTAGCACCAAGTTCATTTACAACTAGAAATGCACTAGCACCTTTGCCTAGCAATTCTATGCCAAATGGAATCGGCAACGGGAGTGGCCGTGGTGCTTCGGGGGCCATTGCTTCACCCACAAAATCAGTATTGTCCAAAGTTATGGACCTGATGTTCGGCCTCTAAATCCTGTTACCAAGTACTGGCTGTTATTCTTTTGGCTGTTCCAAGGCAAATCGAGGATTACTGATCATAACATTTCTTATTGTTGGGTTTTTCGCACCGAAGTGACATTATTGGTCCACAGAATCTGTATTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGAGCTAGTGTTGATGGTGTTTCGCTCGTAAGCATTCAGTGGATCATCCAATACCAAACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATATTGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGACATGAGAGCCTATATATATGTTG] [+] EMBL AK068290 [GCTTCTCCACTAGGGTTTCTCGCCGCCGCCGCCGCCGCTCGCCGTCGCCGTCGCCGCCGGATCAGAGATGAGCGCATCCAGGCCGGATCACCGGCGGCACCACCCGCCGTTTCTCCGGGACCTCTCGTCGCCGATCTCCTCGGCCGTGCGGCTGCCCCCGGCCTCCCTCCGCCGCGAGACGCAAGGTTCCACCACCCCGCCGCCGCCGCCGCCGCCGCTGCTGTTCCTCGACGACCTCTCCCACCACTCCCCCTCGCCGAGGCCCGCCACCCCACCTCAGGCGGCGGCCATGAGCCCCTCGCCTCCCCCTCCCCACCGCGGCGGCCTCTTCTCCTCCACCCCGCTGCGCTCCAATGGGTCCCCCTCCCCGGCCGCGTGGTGGTCCTCCTCGAGGGAGGAGATGGCCAGGGAGGGCTCGCCGGTCGATGGTGTCGTGCAGCCGCAGCAGCAGCCGTCTCCGACGACGGCGTCTGGGCAGCAGTCGCAGCAGCAGAAGGTGACGCTCATCACGCTGCCGCCACCCAGGGAAGTTGCGCGGCCGGAGATGCCGAAGGATTCGACACCTTCCGCTGGCCGTGTCGACGAGGAGGAGTGGGTCACCGTTTTTGGTTTTTTACCTGGCGATACCAACTTGGTACTGAGAGAATTTGAGAAGTGTGGTATAGTCTTGAGACATGTCCCTGGTCCAAGGGATGCGAACTGGATGCATATCCTGTATCAGAGCCGGCATGATGCACAAAAAGCTCTCACCAAGCACGGTCAACAGTTAAACAGTGTTCTTATCATCGGTGTGAAGCAAGTGGACCCATGGCAGCGGCAGTACCTGAATGAGAAGACAAATGAGAACTTTCAAGTTGGTGCAACAGATCCATTTCCATCACAGCATGTAGCACCAAGTTCATTTACAACTAGAAATGCACTAGCACCTTTGCCTAGCAATTCTATGCCAAATGGAATCGGCAACGGGAGTGGCCGTGGTGCTTCGGGGGCCATTGCTTCACCCACAAAATCAGTATTGTCCAAAGTTATGGACCTGATGTTCGGCCTCTAAATCCTGTTACCAAGTACTGGCTGTTATTCTTTTGGCTGTTCCAAGGCAAATCGAGGATTACTGATCATAACATTTCTTATTGTTGGGTTTTTCGCACCGAAGTGACATTATTGGTCCACAGAATCTGTATTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGAGCTAGTGTTGATGGTGTTTCGCTCGTAAGCATTCAGTGGATCATCCAATACCAAACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATATTGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGACATGAGAGCCTATATATATGTTG] consensusID : consensus_380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [CCTACCCANNCNNNNNTACCCCCNCCACANNAACAACCNNCNCCGNNNCNCANNCNANNGCANCNNCNNNAANCGANNNNNNNNNNNNNNNNNNNNNNANNNNATAATATATTTTTCTCCCCCACCCGGGGGGGGGGGCCCCCTGGGGTTTTTTTCAGGGGGCCCTTGCTTTCACCCCCCAAAAATCCGGTTTTGGTCCAAAATTTAAGGCCCTAAATTGTCCGCCCTTCTAAATCCTGTTACAAAGTACTGGCTGTATTCTTTGGCTTGTTCCAAGGCCAAATTCCGAGGAATTCCTGGATCATAACCTTTCCTTATTGTTGGGTTTTTCGCCCCGAAGTGACATTATTGGTCCACAGAATCTGTATTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGAAGCTAAGTGTTGNNNATGNNGTGTTTCGCTCGTAAGCATTCAGTGGGTCATCCAATACCAAACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATATTGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGACATGAGAGCCAAAAAAAAAAAAA] [-] EMBL CA760246 [CCTACCCANNCNNNNNTACCCCCNCCACANNAACAACCNNCNCCGNNNCNCANNCNANNGCANCNNCNNNAANCGANNNNNNNNNNNNNNNNNNNNNNANNNNATAATATATTTTTCTCCCCCACCCGGGGGGGGGGGCCCCCTGGGGTTTTTTTCAGGGGGCCCTTGCTTTCACCCCCCAAAAATCCGGTTTTGGTCCAAAATTTAAGGCCCTAAATTGTCCGCCCTTCTAAATCCTGTTACAAAGTACTGGCTGTATTCTTTGGCTTGTTCCAAGGCCAAATTCCGAGGAATTCCTGGATCATAACCTTTCCTTATTGTTGGGTTTTTCGCCCCGAAGTGACATTATTGGTCCACAGAATCTGTATTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGAAGCTAAGTGTTGNNNATGNNGTGTTTCGCTCGTAAGCATTCAGTGGGTCATCCAATACCAAACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATATTGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGACATGAGAGCCAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_380#0 GCTTCTCCACTAGGGTTTCTCGCCGCCGCCGCCGCCGCTCGCCGTCGCCGTCGCCGCCGG 60 consensus_380#1 ------------------------------------------------------------ consensus_380#0 ATCAGAGATGAGCGCATCCAGGCCGGATCACCGGCGGCACCACCCGCCGTTTCTCCGGGA 120 consensus_380#1 ------------------------------------------------------------ consensus_380#0 CCTCTCGTCGCCGATCTCCTCGGCCGTGCGGCTGCCCCCGGCCTCCCTCCGCCGCGAGAC 180 consensus_380#1 ------------------------------------------------------------ consensus_380#0 GCAAGGTTCCACCACCCCGCCGCCGCCGCCGCCGCCGCTGCTGTTCCTCGACGACCTCTC 240 consensus_380#1 ------------------------------------------------------------ consensus_380#0 CCACCACTCCCCCTCGCCGAGGCCCGCCACCCCACCTCAGGCGGCGGCCATGAGCCCCTC 300 consensus_380#1 ------------------------------------------------------------ consensus_380#0 GCCTCCCCCTCCCCACCGCGGCGGCCTCTTCTCCTCCACCCCGCTGCGCTCCAATGGGTC 360 consensus_380#1 ------------------------------------------------------------ consensus_380#0 CCCCTCCCCGGCCGCGTGGTGGTCCTCCTCGAGGGAGGAGATGGCCAGGGAGGGCTCGCC 420 consensus_380#1 ------------------------------------------------------------ consensus_380#0 GGTCGATGGTGTCGTGCAGCCGCAGCAGCAGCCGTCTCCGACGACGGCGTCTGGGCAGCA 480 consensus_380#1 ------------------------------------------------------------ consensus_380#0 GTCGCAGCAGCAGAAGGTGACGCTCATCACGCTGCCGCCACCCAGGGAAGTTGCGCGGCC 540 consensus_380#1 ------------------------------------------------------------ consensus_380#0 GGAGATGCCGAAGGATTCGACACCTTCCGCTGGCCGTGTCGACGAGGAGGAGTGGGTCAC 600 consensus_380#1 ------------------------------------------------------------ consensus_380#0 CGTTTTTGGTTTTTTACCTGGCGATACCAACTTGGTACTGAGAGAATTTGAGAAGTGTGG 660 consensus_380#1 ------------------------------------------------------------ consensus_380#0 TATAGTCTTGAGACATGTCCCTGGTCCAAGGGATGCGAACTGGATGCATATCCTGTATCA 720 consensus_380#1 ------------------------------------------------------------ consensus_380#0 GAGCCGGCATGATGCACAAAAAGCTCTCACCAAGCACGGTCAACAGTTAAACAGTGTTCT 780 consensus_380#1 ------------------------------------------------------------ consensus_380#0 TATCATCGGTGTGAAGCAAGTGGACCCATGGCAGCGGCAGTACCTGAATGAGAAGACAAA 840 consensus_380#1 --------------------------------------------------CCTACCCANN 10 * ** consensus_380#0 TGAGAACTTTCAAGTTGGTGCAACAGATCCATTTCCATCACAGCATGTAGCACCAAGTTC 900 consensus_380#1 CNNNNNTACCCCCNCCACANNAACAACCNNCNCCGNNNCNCANNCNANNGCANCNNCNNN 70 * **** * ** *** * consensus_380#0 ATTTACAACTAGAAATGCACTAGCACCTTTGCCTAGCAAT-TCTATGCCAAATGGAATCG 959 consensus_380#1 AA--NCGANNNNNNNNNNNNNNNNNNNNNNANNNNATAATATATTTTTCTCCCCCACCCG 128 * * * *** * * * * * ** consensus_380#0 GCAACGGGAGTGGCC-GTGGTGCTTC---GGGGGCCATTGCTT----CACCCACAAAATC 1011 consensus_380#1 GGGGGGGGGGCCCCCTGGGGTTTTTTTCAGGGGGCCCTTGCTTTCACCCCCCAAAAATCC 188 * *** * ** * *** ** ******* ****** * **** *** * consensus_380#0 AGTATTG-TCCAAAGTT-ATGGACCTGA--TGTTCGGCCT-CTAAATCCTGTTACCAAGT 1066 consensus_380#1 GGTTTTGGTCCAAAATTTAAGGCCCTAAATTGTCCGCCCTTCTAAATCCTGTTACAAAGT 248 ** *** ****** ** * ** *** * *** ** *** ************** **** consensus_380#0 ACTGGCTGTTATTCTTTTGGCTGTTCCAAGGCAAA---TCGAGGATTACT--GATCATAA 1121 consensus_380#1 ACTGGCTGT-ATTCTTTGGCTTGTTCCAAGGCCAAATTCCGAGGAATTCCTGGATCATAA 307 ********* ******* * *********** ** ****** * * ******** consensus_380#0 CATTTC-TTATTGTTGGGTTTTTCGCACCGAAGTGACATTATTGGTCCACAGAATCTGTA 1180 consensus_380#1 CCTTTCCTTATTGTTGGGTTTTTCGCCCCGAAGTGACATTATTGGTCCACAGAATCTGTA 367 * **** ******************* ********************************* consensus_380#0 TTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGA- 1239 consensus_380#1 TTGTACCGAGCCTAAGATCATCAGGGTGTCATACTGGTATATCACCCGGTCGGTCTGGAA 427 *********************************************************** consensus_380#0 GCTA-GTGTTGATG-----GTGTTTCGCTCGTAAGCATTCAGTGGATCATCCAATACCAA 1293 consensus_380#1 GCTAAGTGTTGNNNATGNNGTGTTTCGCTCGTAAGCATTCAGTGGGTCATCCAATACCAA 487 **** ****** ************************** ************** consensus_380#0 ACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATAT 1353 consensus_380#1 ACCATATGGAAATTATGTCCATGGAAATATCATCAAGTATCATCCTGGTTTTATACATAT 547 ************************************************************ consensus_380#0 TGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGAC 1413 consensus_380#1 TGAAATGATTCTGACCTGTATGTGAATGCATCTTAGTAAATTGTTTTCGAATGATTTGAC 607 ************************************************************ consensus_380#0 ATGAGAGCCTATATATATGTTG 1435 consensus_380#1 ATGAGAGCCAAAAAAAAAAAAA 629 ********* * * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||