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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3803#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2369 fasta sequence
[AGAGCCACGCTACTCTCCCCACCCAGATTCCACCATTTCACGCCCCCGCCTCCACTTCGCCTTCGCCTCGCCGCGCCGCCGCCGTCTAGCCCTTCCGCGTAGGCCCAGGCGGCCGGGCCGGCGGGAAGCGGCGGCGAGCTCCTCCCCTCTGATGGCGCCGCAGCTGCAGGGCTGCTACGCGGTCTCGTCCTGGCCCCGGCTCCCGCGGCTGCCCCCGTGGCCCTGCGCCTCCCACGCGCAGCGGCGGCGGGTGCTGCGCCTCCTGCCGCCGCGGCGCCGCTGCGCCGGTGCGGTCCGGGTGGTCGCGGAGGCTGGCCCGGCCCTGGCAATAGACCGCGTCGCGGAGGAGGCGGACGTGCGGTTTCCGGGGGATGTGGAGGGGGTTCCGGGCCAGCAGCAGCAGCGGGAGGAGGAGGAGGATGCAGTGGATGAGAGGGAGAGGTTGAGGCGGATGCGGATCTCGAAGGCGAACAAGGGGAACACGCCGTGGAACAAGGGCAGGAAGCACACCCCAGAGACGCTGCAGAGGATTCGGGAGAGAACCAGGATTGCGATGCAGGATCCCAAGGTTAAGAAAAAGTTGATGCATCTGGGACATGCACAGAGCGAAGAGACAAGAATAAAGATATCCATGGGAGTGAGGCGAGGATGGAACTTGCGTTTACAGAAATTAATGATCCAGGATGGTTGCTTTGTGGAGTGGAGAGACATGATAGCAGATGCTGCTAGGAAGGGCTTTGCTGGTGGAATATCCCTACAATGGAATTCATATAAAATCTTGACTGAGCAGATGCGGCAGGAGTGGTTGGAAAAATTCCAGAAAAGAAGATCAATGCCTCGGCCAACAGGTAATCGACGAGCACCAAAATCTCCAGAGCAGCGGAGAAAAATTGCAGAAGCCATTGCTGCGAAGTGGCTAGATAAGGAATACCGTGAACGTGTATGCAGTGGAATTGCTAGCTACCATGGAACATCTTCTGGAACTAAAGTACCACGAAAGCCAAGATCTGCCAGAGAACCTGGTTCAAAGAGAGATACTGTGAAAAAGAAACCTATTCAATCCAGATCAGCTGGATTGGAGGATGCATGTGGAACGACTCCCACAGTTAAGAGAAAGAAAAGTGCAACTCCTTACAAAGATCCAATGGCTGGTGAAAAACTAGAGATGATAACAAAGATTCGAGCTCAAAGGGCAGCCCTAGAAATAGAAAAGAAAGAAGCTATTAAAAGGGCTAGGTCACTGATTGCAGAAGCTGAGAAGGCTGCAAATGCTCTGGAGACTGTTGCTTCCACAAGCCCTTTTGCTCAAGCATCACTTATAGAAGCTAGAAAGCTTGTTACAGAGGCTAGATTATCACTTCAACACGTTGATGATGAAGGGCCTGCAGATAGTGCTTCTGATGATGCATCACAAGACTCAGGTGCGTCTGATTTGCACAATCACGACATGGCAAATCAAAATGACGTGATCAAGCAAGAGAATAAACCAGTCAATGGGATGGAGCTTCCTCCAAGCAATGTTAATGGCAGAGATTTCTATTTTGACGTGTCGACTCTCACTGAAACAGATCACCTTAGAGATTATCAGAGAATAGAAAATTCTATGGAAAGAGCCTATCTGCTTCCTTCCGCTTCTTCAGCTATTCAAGACGTGAACGAAAATCACAGGATGAAAGATTTTAACGCACATCAATTAATGGTTAATGATGAATCAATAACAATTGACCAAATTGCATCTGAAGTAGCAGAAATTTATCCTGACGAGCCACAGGAGGATGACACGCTACCTGTGCAGAAGTCTAAAATGAGGTGGGTACGTGGGCGACTAGTTGAAGTGGAAGAATAAACAGTTACCAGAATTATATTGGTTGACTAAACTGTTCAAGATATCATTATCTTGCATTCCGCTTCTGCTTTGATTACTGTTGGTATGGACCAAAATGGGAAATGATTGCTGATCTTGGCACGTATTCATGGTGCATTCAACCATGGGAATTAGTCGGGAATACGCCATGACAGAGCCTATTATATTCTGAGGTGAGATGCTTGTAATTAGTAGTTGCCAACTTTAGATATTTTCCTCTTCTTGAATGTAGTCAGGTTAGCCAAACTGAAATCCTAAAATCACGGTGTGGTGGATGCATTTATCTTGTATTAGAACATTTTGTAGCTGTCAGATTGAGGTCCTACGGATAGCCCTAACACAGATTTCATTAAGTCAAATCATACGAGGTTGTCTTGTAAGATAAGTCAAATCATACGAGGTCGTCTTGTAAGATATTCTGTAGCTATCATTTTTTTTCTAGGTTATCTTGTACCTGAGTTCATTTGTGAACTTGTATCGAGAGAACTACTGTTTCTGGCTTTCT]
[+] EMBL AK068249 [AGAGCCACGCTACTCTCCCCACCCAGATTCCACCATTTCACGCCCCCGCCTCCACTTCGCCTTCGCCTCGCCGCGCCGCCGCCGTCTAGCCCTTCCGCGTAGGCCCAGGCGGCCGGGCCGGCGGGAAGCGGCGGCGAGCTCCTCCCCTCTGATGGCGCCGCAGCTGCAGGGCTGCTACGCGGTCTCGTCCTGGCCCCGGCTCCCGCGGCTGCCCCCGTGGCCCTGCGCCTCCCACGCGCAGCGGCGGCGGGTGCTGCGCCTCCTGCCGCCGCGGCGCCGCTGCGCCGGTGCGGTCCGGGTGGTCGCGGAGGCTGGCCCGGCCCTGGCAATAGACCGCGTCGCGGAGGAGGCGGACGTGCGGTTTCCGGGGGATGTGGAGGGGGTTCCGGGCCAGCAGCAGCAGCGGGAGGAGGAGGAGGATGCAGTGGATGAGAGGGAGAGGTTGAGGCGGATGCGGATCTCGAAGGCGAACAAGGGGAACACGCCGTGGAACAAGGGCAGGAAGCACACCCCAGAGACGCTGCAGAGGATTCGGGAGAGAACCAGGATTGCGATGCAGGATCCCAAGGTTAAGAAAAAGTTGATGCATCTGGGACATGCACAGAGCGAAGAGACAAGAATAAAGATATCCATGGGAGTGAGGCGAGGATGGAACTTGCGTTTACAGAAATTAATGATCCAGGATGGTTGCTTTGTGGAGTGGAGAGACATGATAGCAGATGCTGCTAGGAAGGGCTTTGCTGGTGGAATATCCCTACAATGGAATTCATATAAAATCTTGACTGAGCAGATGCGGCAGGAGTGGTTGGAAAAATTCCAGAAAAGAAGATCAATGCCTCGGCCAACAGGTAATCGACGAGCACCAAAATCTCCAGAGCAGCGGAGAAAAATTGCAGAAGCCATTGCTGCGAAGTGGCTAGATAAGGAATACCGTGAACGTGTATGCAGTGGAATTGCTAGCTACCATGGAACATCTTCTGGAACTAAAGTACCACGAAAGCCAAGATCTGCCAGAGAACCTGGTTCAAAGAGAGATACTGTGAAAAAGAAACCTATTCAATCCAGATCAGCTGGATTGGAGGATGCATGTGGAACGACTCCCACAGTTAAGAGAAAGAAAAGTGCAACTCCTTACAAAGATCCAATGGCTGGTGAAAAACTAGAGATGATAACAAAGATTCGAGCTCAAAGGGCAGCCCTAGAAATAGAAAAGAAAGAAGCTATTAAAAGGGCTAGGTCACTGATTGCAGAAGCTGAGAAGGCTGCAAATGCTCTGGAGACTGTTGCTTCCACAAGCCCTTTTGCTCAAGCATCACTTATAGAAGCTAGAAAGCTTGTTACAGAGGCTAGATTATCACTTCAACACGTTGATGATGAAGGGCCTGCAGATAGTGCTTCTGATGATGCATCACAAGACTCAGGTGCGTCTGATTTGCACAATCACGACATGGCAAATCAAAATGACGTGATCAAGCAAGAGAATAAACCAGTCAATGGGATGGAGCTTCCTCCAAGCAATGTTAATGGCAGAGATTTCTATTTTGACGTGTCGACTCTCACTGAAACAGATCACCTTAGAGATTATCAGAGAATAGAAAATTCTATGGAAAGAGCCTATCTGCTTCCTTCCGCTTCTTCAGCTATTCAAGACGTGAACGAAAATCACAGGATGAAAGATTTTAACGCACATCAATTAATGGTTAATGATGAATCAATAACAATTGACCAAATTGCATCTGAAGTAGCAGAAATTTATCCTGACGAGCCACAGGAGGATGACACGCTACCTGTGCAGAAGTCTAAAATGAGGTGGGTACGTGGGCGACTAGTTGAAGTGGAAGAATAAACAGTTACCAGAATTATATTGGTTGACTAAACTGTTCAAGATATCATTATCTTGCATTCCGCTTCTGCTTTGATTACTGTTGGTATGGACCAAAATGGGAAATGATTGCTGATCTTGGCACGTATTCATGGTGCATTCAACCATGGGAATTAGTCGGGAATACGCCATGACAGAGCCTATTATATTCTGAGGTGAGATGCTTGTAATTAGTAGTTGCCAACTTTAGATATTTTCCTCTTCTTGAATGTAGTCAGGTTAGCCAAACTGAAATCCTAAAATCACGGTGTGGTGGATGCATTTATCTTGTATTAGAACATTTTGTAGCTGTCAGATTGAGGTCCTACGGATAGCCCTAACACAGATTTCATTAAGTCAAATCATACGAGGTTGTCTTGTAAGATAAGTCAAATCATACGAGGTCGTCTTGTAAGATATTCTGTAGCTATCATTTTTTTTCTAGGTTATCTTGTACCTGAGTTCATTTGTGAACTTGTATCGAGAGAACTACTGTTTCTGGCTTTCT]
consensusID : consensus_3803#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence
[GAGGATGCAGTGGATGAGAGGGAGAGGTTGAGGCGGATGCGGATCTCGAAGGCGAACAAGGGGAACACGCCGTGGAACAAGGGCAGGAAGCACACCCCAGAGACGCTGCAGAGGATTCGGGAGAGAACCAGGATTGCTATGCAGGATCCCAAGGTGAAGTCATGTTAAGAAAAAGTTGATGCATCTGGGACATGCACAGAGCGAAGAGACAAGAATAAAGATATCCATGGGAGTGAGGCGAGGATGGAACTTGCGTTTACAGAAATTAATGATCTAGGATGGTTGCTTTGTGGAGTGGAGAGACATGATAGCAGATGCTGCTAGGAAGGGCTTTGCTGGTGGAATATCCCTACAATGGAATTCATATAAAATCTTGACTGAGCAGATGCGGCAGGAGTGGTTGGAAAAAGTCCAGAAAAGAAGATCAATGCCTCGGCCAACAGGTAATCGACGAGCACCAAAATCTCCAGAGCAGCGGAGAAAAATTGCAGAAGCCATTGCTGCGAAGTGGCTAGATAAGGAATACCGTGAACGTGTATGCAGTGGAATTGCTAGCTACCATGGAACATCTTCTGGAACTAAAGTACCACGAAA]
[+] EMBL CF304269 [GAGGATGCAGTGGATGAGAGGGAGAGGTTGAGGCGGATGCGGATCTCGAAGGCGAACAAGGGGAACACGCCGTGGAACAAGGGCAGGAAGCACACCCCAGAGACGCTGCAGAGGATTCGGGAGAGAACCAGGATTGCTATGCAGGATCCCAAGGTGAAGTCATGTTAAGAAAAAGTTGATGCATCTGGGACATGCACAGAGCGAAGAGACAAGAATAAAGATATCCATGGGAGTGAGGCGAGGATGGAACTTGCGTTTACAGAAATTAATGATCTAGGATGGTTGCTTTGTGGAGTGGAGAGACATGATAGCAGATGCTGCTAGGAAGGGCTTTGCTGGTGGAATATCCCTACAATGGAATTCATATAAAATCTTGACTGAGCAGATGCGGCAGGAGTGGTTGGAAAAAGTCCAGAAAAGAAGATCAATGCCTCGGCCAACAGGTAATCGACGAGCACCAAAATCTCCAGAGCAGCGGAGAAAAATTGCAGAAGCCATTGCTGCGAAGTGGCTAGATAAGGAATACCGTGAACGTGTATGCAGTGGAATTGCTAGCTACCATGGAACATCTTCTGGAACTAAAGTACCACGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3803#0 AGAGCCACGCTACTCTCCCCACCCAGATTCCACCATTTCACGCCCCCGCCTCCACTTCGC 60
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 CTTCGCCTCGCCGCGCCGCCGCCGTCTAGCCCTTCCGCGTAGGCCCAGGCGGCCGGGCCG 120
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 GCGGGAAGCGGCGGCGAGCTCCTCCCCTCTGATGGCGCCGCAGCTGCAGGGCTGCTACGC 180
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 GGTCTCGTCCTGGCCCCGGCTCCCGCGGCTGCCCCCGTGGCCCTGCGCCTCCCACGCGCA 240
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 GCGGCGGCGGGTGCTGCGCCTCCTGCCGCCGCGGCGCCGCTGCGCCGGTGCGGTCCGGGT 300
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 GGTCGCGGAGGCTGGCCCGGCCCTGGCAATAGACCGCGTCGCGGAGGAGGCGGACGTGCG 360
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 GTTTCCGGGGGATGTGGAGGGGGTTCCGGGCCAGCAGCAGCAGCGGGAGGAGGAGGAGGA 420
consensus_3803#1 -------------------------------------------------------GAGGA 5
*****
consensus_3803#0 TGCAGTGGATGAGAGGGAGAGGTTGAGGCGGATGCGGATCTCGAAGGCGAACAAGGGGAA 480
consensus_3803#1 TGCAGTGGATGAGAGGGAGAGGTTGAGGCGGATGCGGATCTCGAAGGCGAACAAGGGGAA 65
************************************************************
consensus_3803#0 CACGCCGTGGAACAAGGGCAGGAAGCACACCCCAGAGACGCTGCAGAGGATTCGGGAGAG 540
consensus_3803#1 CACGCCGTGGAACAAGGGCAGGAAGCACACCCCAGAGACGCTGCAGAGGATTCGGGAGAG 125
************************************************************
consensus_3803#0 AACCAGGATTGCGATGCAGGATCCCAAGGT----------TAAGAAAAAGTTGATGCATC 590
consensus_3803#1 AACCAGGATTGCTATGCAGGATCCCAAGGTGAAGTCATGTTAAGAAAAAGTTGATGCATC 185
************ ***************** ********************
consensus_3803#0 TGGGACATGCACAGAGCGAAGAGACAAGAATAAAGATATCCATGGGAGTGAGGCGAGGAT 650
consensus_3803#1 TGGGACATGCACAGAGCGAAGAGACAAGAATAAAGATATCCATGGGAGTGAGGCGAGGAT 245
************************************************************
consensus_3803#0 GGAACTTGCGTTTACAGAAATTAATGATCCAGGATGGTTGCTTTGTGGAGTGGAGAGACA 710
consensus_3803#1 GGAACTTGCGTTTACAGAAATTAATGATCTAGGATGGTTGCTTTGTGGAGTGGAGAGACA 305
***************************** ******************************
consensus_3803#0 TGATAGCAGATGCTGCTAGGAAGGGCTTTGCTGGTGGAATATCCCTACAATGGAATTCAT 770
consensus_3803#1 TGATAGCAGATGCTGCTAGGAAGGGCTTTGCTGGTGGAATATCCCTACAATGGAATTCAT 365
************************************************************
consensus_3803#0 ATAAAATCTTGACTGAGCAGATGCGGCAGGAGTGGTTGGAAAAATTCCAGAAAAGAAGAT 830
consensus_3803#1 ATAAAATCTTGACTGAGCAGATGCGGCAGGAGTGGTTGGAAAAAGTCCAGAAAAGAAGAT 425
******************************************** ***************
consensus_3803#0 CAATGCCTCGGCCAACAGGTAATCGACGAGCACCAAAATCTCCAGAGCAGCGGAGAAAAA 890
consensus_3803#1 CAATGCCTCGGCCAACAGGTAATCGACGAGCACCAAAATCTCCAGAGCAGCGGAGAAAAA 485
************************************************************
consensus_3803#0 TTGCAGAAGCCATTGCTGCGAAGTGGCTAGATAAGGAATACCGTGAACGTGTATGCAGTG 950
consensus_3803#1 TTGCAGAAGCCATTGCTGCGAAGTGGCTAGATAAGGAATACCGTGAACGTGTATGCAGTG 545
************************************************************
consensus_3803#0 GAATTGCTAGCTACCATGGAACATCTTCTGGAACTAAAGTACCACGAAAGCCAAGATCTG 1010
consensus_3803#1 GAATTGCTAGCTACCATGGAACATCTTCTGGAACTAAAGTACCACGAAA----------- 594
*************************************************
consensus_3803#0 CCAGAGAACCTGGTTCAAAGAGAGATACTGTGAAAAAGAAACCTATTCAATCCAGATCAG 1070
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 CTGGATTGGAGGATGCATGTGGAACGACTCCCACAGTTAAGAGAAAGAAAAGTGCAACTC 1130
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 CTTACAAAGATCCAATGGCTGGTGAAAAACTAGAGATGATAACAAAGATTCGAGCTCAAA 1190
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 GGGCAGCCCTAGAAATAGAAAAGAAAGAAGCTATTAAAAGGGCTAGGTCACTGATTGCAG 1250
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 AAGCTGAGAAGGCTGCAAATGCTCTGGAGACTGTTGCTTCCACAAGCCCTTTTGCTCAAG 1310
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 CATCACTTATAGAAGCTAGAAAGCTTGTTACAGAGGCTAGATTATCACTTCAACACGTTG 1370
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 ATGATGAAGGGCCTGCAGATAGTGCTTCTGATGATGCATCACAAGACTCAGGTGCGTCTG 1430
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 ATTTGCACAATCACGACATGGCAAATCAAAATGACGTGATCAAGCAAGAGAATAAACCAG 1490
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 TCAATGGGATGGAGCTTCCTCCAAGCAATGTTAATGGCAGAGATTTCTATTTTGACGTGT 1550
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 CGACTCTCACTGAAACAGATCACCTTAGAGATTATCAGAGAATAGAAAATTCTATGGAAA 1610
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 GAGCCTATCTGCTTCCTTCCGCTTCTTCAGCTATTCAAGACGTGAACGAAAATCACAGGA 1670
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 TGAAAGATTTTAACGCACATCAATTAATGGTTAATGATGAATCAATAACAATTGACCAAA 1730
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 TTGCATCTGAAGTAGCAGAAATTTATCCTGACGAGCCACAGGAGGATGACACGCTACCTG 1790
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 TGCAGAAGTCTAAAATGAGGTGGGTACGTGGGCGACTAGTTGAAGTGGAAGAATAAACAG 1850
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 TTACCAGAATTATATTGGTTGACTAAACTGTTCAAGATATCATTATCTTGCATTCCGCTT 1910
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 CTGCTTTGATTACTGTTGGTATGGACCAAAATGGGAAATGATTGCTGATCTTGGCACGTA 1970
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 TTCATGGTGCATTCAACCATGGGAATTAGTCGGGAATACGCCATGACAGAGCCTATTATA 2030
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 TTCTGAGGTGAGATGCTTGTAATTAGTAGTTGCCAACTTTAGATATTTTCCTCTTCTTGA 2090
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 ATGTAGTCAGGTTAGCCAAACTGAAATCCTAAAATCACGGTGTGGTGGATGCATTTATCT 2150
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 TGTATTAGAACATTTTGTAGCTGTCAGATTGAGGTCCTACGGATAGCCCTAACACAGATT 2210
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 TCATTAAGTCAAATCATACGAGGTTGTCTTGTAAGATAAGTCAAATCATACGAGGTCGTC 2270
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 TTGTAAGATATTCTGTAGCTATCATTTTTTTTCTAGGTTATCTTGTACCTGAGTTCATTT 2330
consensus_3803#1 ------------------------------------------------------------
consensus_3803#0 GTGAACTTGTATCGAGAGAACTACTGTTTCTGGCTTTCT 2369
consensus_3803#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||