cluster # 3809

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Oryza sativa
cluster # 3809 cluster # 3809 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3809#0 length = 1703 sequences # 1

consensus_3809#1 length = 178 sequences # 1

consensusID : consensus_3809#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1703
fasta sequence

                              [AAGCTAGCTCGCTCCAAGCATGGCGACCGTTGAGTCATCGACGGCGCCGGGCGTCGCCGTCGCCGCCGCGGTGGTTCTGGTGGTCTTGACGTGGCTGTGGACGGCGCGGTGCAGCTGGTGTGGAGGCCGTACGCCGTGGCGAGGGCGTTCGGTCGGCAGCGGATCCGCGGGCCGGCGTACCGGCTCTTCGTCGGCAGCGACGGCGAGGCGAACGCGATGCGCGCCGCGACGCGCGGCGACGTGCTCGACCGGCGCTGCCACGACATCGTCCCGCGCGTGATGCCGCACTACCGCGCGTGGATGTCGCGCTACGGCAAGGTGTTCGTCTCGTGGAGCGGCGCCACGCCCGCGCTCTGCGTCGGCGACTACGCCATGGTGAAGCAGATCCTGTCCGACCGGACGGGGCTGTACGGCAAGCCGGAGCCCGAGCCGAGCATCCTGGCGCTGATCGGCAACGGCCTCATCTTCATCGGCGGCGACGACTGGGCGCGCCACCGTCGCGTCGTGCACCCGGCGTTCGCCATGGACAAGCTCAAGATGATGGCCAAGACGATGGCGGATTGCGCGCGGGAGGTGATCCGGGAGTGGGAGGCGCGTGCCACGGCCGACGGCGAGCGGCGGGTGCAGGTGGAGGTCGGGGGGCAGCTCCAGGAGCTGACCGCCGACGTGATCTCGCACACGGCGTTCGGCAGCAGCTACAGGGAAGGGAAGGAGGTGTTCGTCGCGCAGCGCGAGCTCCAGTCCATCGCCTTCTCCGCCATCAACAGCACCCGCTTCCCGGGCAGCCAGTACATCCCGACGAAGACGAACCTGCGCCGGCGACATCTCGCCAAGAAGGTGAGAGGCACGCTCATGGCGATCATACGCGAGCGCCAGGCCGCCGCCGCCAAGGAGGACAGCGGACACGGCAACGACCTCCTCGGCCTGATGCTCGAGGCCAACGCGACGGACGCCTGCGGTAGCGGCGGCGAGAAGAGCATGACCATGGACGAGATCGTCGACGAGTGCAAGACCTTCTTCTTCGCCGGCCACGACACCACCTCGCACCTCCTTACCTGGGCCATGTTCCTCCTCGGCACGCACCCCGAGTGGCAGCACCGCCTCCGCGAGGAGGTCCTCCGTGAATGCGGCGGCGGCGGCGACACGGAGGCGCTCCCCAACGGCGACGCTCTCAACAAGCTCAAGCTGATGACGATGGTGCTGTACGAGACGCTGCGGCTGTACGGGCCGGTGAGCCTGATGGCGAGGACGGCGACGGCGGACGCGGAGCTCGGCGGCGTGCGGGTGCCCAAGGGCACGATGACGATGATACCGATGGCGATCCTGCACCGCGACGCGGACGTGTGGGGCGCGGGCGCCGGCGAGTTCGACCCGCTCCGGTTCCGCGGCGGCGTGAACAAGGCGGCGGCGCACGCCGGCGCGCTGCTGGCCTTCTCGCTGGGGCAGAGGTCGTGCATCGGGCAGGACTTCGCGATGATGGAGGCGAAGACGACGCTGGCCATGATCCTCCGGCGCTTCGCCTTCGAGGTCTCACCGGAGTACGTGCACGCGCCGCTCGACTTGCTGACGCTTCAGCCCAAGTGCGGGCTCCCAATGGTGCTCAAGCTCTTGGATCAATAGAACGTGTAGAACCTTTGGTCGCTAATTTCTCGGGCATTTTCTATGGGATTGTGTTCGCAACATTTGATTGAAAGACCTGCCTC]

[+] EMBL AK106632             [AAGCTAGCTCGCTCCAAGCATGGCGACCGTTGAGTCATCGACGGCGCCGGGCGTCGCCGTCGCCGCCGCGGTGGTTCTGGTGGTCTTGACGTGGCTGTGGACGGCGCGGTGCAGCTGGTGTGGAGGCCGTACGCCGTGGCGAGGGCGTTCGGTCGGCAGCGGATCCGCGGGCCGGCGTACCGGCTCTTCGTCGGCAGCGACGGCGAGGCGAACGCGATGCGCGCCGCGACGCGCGGCGACGTGCTCGACCGGCGCTGCCACGACATCGTCCCGCGCGTGATGCCGCACTACCGCGCGTGGATGTCGCGCTACGGCAAGGTGTTCGTCTCGTGGAGCGGCGCCACGCCCGCGCTCTGCGTCGGCGACTACGCCATGGTGAAGCAGATCCTGTCCGACCGGACGGGGCTGTACGGCAAGCCGGAGCCCGAGCCGAGCATCCTGGCGCTGATCGGCAACGGCCTCATCTTCATCGGCGGCGACGACTGGGCGCGCCACCGTCGCGTCGTGCACCCGGCGTTCGCCATGGACAAGCTCAAGATGATGGCCAAGACGATGGCGGATTGCGCGCGGGAGGTGATCCGGGAGTGGGAGGCGCGTGCCACGGCCGACGGCGAGCGGCGGGTGCAGGTGGAGGTCGGGGGGCAGCTCCAGGAGCTGACCGCCGACGTGATCTCGCACACGGCGTTCGGCAGCAGCTACAGGGAAGGGAAGGAGGTGTTCGTCGCGCAGCGCGAGCTCCAGTCCATCGCCTTCTCCGCCATCAACAGCACCCGCTTCCCGGGCAGCCAGTACATCCCGACGAAGACGAACCTGCGCCGGCGACATCTCGCCAAGAAGGTGAGAGGCACGCTCATGGCGATCATACGCGAGCGCCAGGCCGCCGCCGCCAAGGAGGACAGCGGACACGGCAACGACCTCCTCGGCCTGATGCTCGAGGCCAACGCGACGGACGCCTGCGGTAGCGGCGGCGAGAAGAGCATGACCATGGACGAGATCGTCGACGAGTGCAAGACCTTCTTCTTCGCCGGCCACGACACCACCTCGCACCTCCTTACCTGGGCCATGTTCCTCCTCGGCACGCACCCCGAGTGGCAGCACCGCCTCCGCGAGGAGGTCCTCCGTGAATGCGGCGGCGGCGGCGACACGGAGGCGCTCCCCAACGGCGACGCTCTCAACAAGCTCAAGCTGATGACGATGGTGCTGTACGAGACGCTGCGGCTGTACGGGCCGGTGAGCCTGATGGCGAGGACGGCGACGGCGGACGCGGAGCTCGGCGGCGTGCGGGTGCCCAAGGGCACGATGACGATGATACCGATGGCGATCCTGCACCGCGACGCGGACGTGTGGGGCGCGGGCGCCGGCGAGTTCGACCCGCTCCGGTTCCGCGGCGGCGTGAACAAGGCGGCGGCGCACGCCGGCGCGCTGCTGGCCTTCTCGCTGGGGCAGAGGTCGTGCATCGGGCAGGACTTCGCGATGATGGAGGCGAAGACGACGCTGGCCATGATCCTCCGGCGCTTCGCCTTCGAGGTCTCACCGGAGTACGTGCACGCGCCGCTCGACTTGCTGACGCTTCAGCCCAAGTGCGGGCTCCCAATGGTGCTCAAGCTCTTGGATCAATAGAACGTGTAGAACCTTTGGTCGCTAATTTCTCGGGCATTTTCTATGGGATTGTGTTCGCAACATTTGATTGAAAGACCTGCCTC]




>consensus_3809#0
AAGCTAGCTCGCTCCAAGCATGGCGACCGTTGAGTCATCGACGGCGCCGGGCGTCGCCGT
CGCCGCCGCGGTGGTTCTGGTGGTCTTGACGTGGCTGTGGACGGCGCGGTGCAGCTGGTG
TGGAGGCCGTACGCCGTGGCGAGGGCGTTCGGTCGGCAGCGGATCCGCGGGCCGGCGTAC
CGGCTCTTCGTCGGCAGCGACGGCGAGGCGAACGCGATGCGCGCCGCGACGCGCGGCGAC
GTGCTCGACCGGCGCTGCCACGACATCGTCCCGCGCGTGATGCCGCACTACCGCGCGTGG
ATGTCGCGCTACGGCAAGGTGTTCGTCTCGTGGAGCGGCGCCACGCCCGCGCTCTGCGTC
GGCGACTACGCCATGGTGAAGCAGATCCTGTCCGACCGGACGGGGCTGTACGGCAAGCCG
GAGCCCGAGCCGAGCATCCTGGCGCTGATCGGCAACGGCCTCATCTTCATCGGCGGCGAC
GACTGGGCGCGCCACCGTCGCGTCGTGCACCCGGCGTTCGCCATGGACAAGCTCAAGATG
ATGGCCAAGACGATGGCGGATTGCGCGCGGGAGGTGATCCGGGAGTGGGAGGCGCGTGCC
ACGGCCGACGGCGAGCGGCGGGTGCAGGTGGAGGTCGGGGGGCAGCTCCAGGAGCTGACC
GCCGACGTGATCTCGCACACGGCGTTCGGCAGCAGCTACAGGGAAGGGAAGGAGGTGTTC
GTCGCGCAGCGCGAGCTCCAGTCCATCGCCTTCTCCGCCATCAACAGCACCCGCTTCCCG
GGCAGCCAGTACATCCCGACGAAGACGAACCTGCGCCGGCGACATCTCGCCAAGAAGGTG
AGAGGCACGCTCATGGCGATCATACGCGAGCGCCAGGCCGCCGCCGCCAAGGAGGACAGC
GGACACGGCAACGACCTCCTCGGCCTGATGCTCGAGGCCAACGCGACGGACGCCTGCGGT
AGCGGCGGCGAGAAGAGCATGACCATGGACGAGATCGTCGACGAGTGCAAGACCTTCTTC
TTCGCCGGCCACGACACCACCTCGCACCTCCTTACCTGGGCCATGTTCCTCCTCGGCACG
CACCCCGAGTGGCAGCACCGCCTCCGCGAGGAGGTCCTCCGTGAATGCGGCGGCGGCGGC
GACACGGAGGCGCTCCCCAACGGCGACGCTCTCAACAAGCTCAAGCTGATGACGATGGTG
CTGTACGAGACGCTGCGGCTGTACGGGCCGGTGAGCCTGATGGCGAGGACGGCGACGGCG
GACGCGGAGCTCGGCGGCGTGCGGGTGCCCAAGGGCACGATGACGATGATACCGATGGCG
ATCCTGCACCGCGACGCGGACGTGTGGGGCGCGGGCGCCGGCGAGTTCGACCCGCTCCGG
TTCCGCGGCGGCGTGAACAAGGCGGCGGCGCACGCCGGCGCGCTGCTGGCCTTCTCGCTG
GGGCAGAGGTCGTGCATCGGGCAGGACTTCGCGATGATGGAGGCGAAGACGACGCTGGCC
ATGATCCTCCGGCGCTTCGCCTTCGAGGTCTCACCGGAGTACGTGCACGCGCCGCTCGAC
TTGCTGACGCTTCAGCCCAAGTGCGGGCTCCCAATGGTGCTCAAGCTCTTGGATCAATAG
AACGTGTAGAACCTTTGGTCGCTAATTTCTCGGGCATTTTCTATGGGATTGTGTTCGCAA
CATTTGATTGAAAGACCTGCCTC

consensusID : consensus_3809#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 178
fasta sequence

                              [ACCGTTGAGTCATCGACGGCGCCGGGCGTCGCCGTCGCCGCCGCGGTGGTTCTGGTGGTCTTAACGTGGCTNTGGACGGCGCGGTGCANCTNGTGTGGAGGCCGTACGCCGTGGCGAANGGCNTTCGGTCGGCAGCGGATCCNNGGGCCGGCGTANCGNCTCTTCGTCGGNAGCNACG]

[+] EMBL AU067908             [ACCGTTGAGTCATCGACGGCGCCGGGCGTCGCCGTCGCCGCCGCGGTGGTTCTGGTGGTCTTAACGTGGCTNTGGACGGCGCGGTGCANCTNGTGTGGAGGCCGTACGCCGTGGCGAANGGCNTTCGGTCGGCAGCGGATCCNNGGGCCGGCGTANCGNCTCTTCGTCGGNAGCNACG]




>consensus_3809#1
ACCGTTGAGTCATCGACGGCGCCGGGCGTCGCCGTCGCCGCCGCGGTGGTTCTGGTGGTC
TTAACGTGGCTNTGGACGGCGCGGTGCANCTNGTGTGGAGGCCGTACGCCGTGGCGAANG
GCNTTCGGTCGGCAGCGGATCCNNGGGCCGGCGTANCGNCTCTTCGTCGGNAGCNACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3809#0      AAGCTAGCTCGCTCCAAGCATGGCGACCGTTGAGTCATCGACGGCGCCGGGCGTCGCCGT 60
consensus_3809#1      -------------------------ACCGTTGAGTCATCGACGGCGCCGGGCGTCGCCGT 35
                                               ***********************************

consensus_3809#0      CGCCGCCGCGGTGGTTCTGGTGGTCTTGACGTGGCTGTGGACGGCGCGGTGCAGCTGGTG 120
consensus_3809#1      CGCCGCCGCGGTGGTTCTGGTGGTCTTAACGTGGCTNTGGACGGCGCGGTGCANCTNGTG 95
                      *************************** ******** **************** ** ***

consensus_3809#0      TGGAGGCCGTACGCCGTGGCGA-GGGCGTTCGGTCGGCAGCGGATCCGCGGGCCGGCGTA 179
consensus_3809#1      TGGAGGCCGTACGCCGTGGCGAANGGCNTTCGGTCGGCAGCGGATCCNNGGGCCGGCGTA 155
                      **********************  *** *******************  ***********

consensus_3809#0      CCGGCTCTTCGTCGGCAGCGACGGCGAGGCGAACGCGATGCGCGCCGCGACGCGCGGCGA 239
consensus_3809#1      NCGNCTCTTCGTCGGNAGCNACG------------------------------------- 178
                       ** *********** *** ***                                     

consensus_3809#0      CGTGCTCGACCGGCGCTGCCACGACATCGTCCCGCGCGTGATGCCGCACTACCGCGCGTG 299
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      GATGTCGCGCTACGGCAAGGTGTTCGTCTCGTGGAGCGGCGCCACGCCCGCGCTCTGCGT 359
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      CGGCGACTACGCCATGGTGAAGCAGATCCTGTCCGACCGGACGGGGCTGTACGGCAAGCC 419
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      GGAGCCCGAGCCGAGCATCCTGGCGCTGATCGGCAACGGCCTCATCTTCATCGGCGGCGA 479
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      CGACTGGGCGCGCCACCGTCGCGTCGTGCACCCGGCGTTCGCCATGGACAAGCTCAAGAT 539
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      GATGGCCAAGACGATGGCGGATTGCGCGCGGGAGGTGATCCGGGAGTGGGAGGCGCGTGC 599
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      CACGGCCGACGGCGAGCGGCGGGTGCAGGTGGAGGTCGGGGGGCAGCTCCAGGAGCTGAC 659
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      CGCCGACGTGATCTCGCACACGGCGTTCGGCAGCAGCTACAGGGAAGGGAAGGAGGTGTT 719
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      CGTCGCGCAGCGCGAGCTCCAGTCCATCGCCTTCTCCGCCATCAACAGCACCCGCTTCCC 779
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      GGGCAGCCAGTACATCCCGACGAAGACGAACCTGCGCCGGCGACATCTCGCCAAGAAGGT 839
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      GAGAGGCACGCTCATGGCGATCATACGCGAGCGCCAGGCCGCCGCCGCCAAGGAGGACAG 899
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      CGGACACGGCAACGACCTCCTCGGCCTGATGCTCGAGGCCAACGCGACGGACGCCTGCGG 959
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      TAGCGGCGGCGAGAAGAGCATGACCATGGACGAGATCGTCGACGAGTGCAAGACCTTCTT 1019
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      CTTCGCCGGCCACGACACCACCTCGCACCTCCTTACCTGGGCCATGTTCCTCCTCGGCAC 1079
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      GCACCCCGAGTGGCAGCACCGCCTCCGCGAGGAGGTCCTCCGTGAATGCGGCGGCGGCGG 1139
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      CGACACGGAGGCGCTCCCCAACGGCGACGCTCTCAACAAGCTCAAGCTGATGACGATGGT 1199
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      GCTGTACGAGACGCTGCGGCTGTACGGGCCGGTGAGCCTGATGGCGAGGACGGCGACGGC 1259
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      GGACGCGGAGCTCGGCGGCGTGCGGGTGCCCAAGGGCACGATGACGATGATACCGATGGC 1319
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      GATCCTGCACCGCGACGCGGACGTGTGGGGCGCGGGCGCCGGCGAGTTCGACCCGCTCCG 1379
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      GTTCCGCGGCGGCGTGAACAAGGCGGCGGCGCACGCCGGCGCGCTGCTGGCCTTCTCGCT 1439
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      GGGGCAGAGGTCGTGCATCGGGCAGGACTTCGCGATGATGGAGGCGAAGACGACGCTGGC 1499
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      CATGATCCTCCGGCGCTTCGCCTTCGAGGTCTCACCGGAGTACGTGCACGCGCCGCTCGA 1559
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      CTTGCTGACGCTTCAGCCCAAGTGCGGGCTCCCAATGGTGCTCAAGCTCTTGGATCAATA 1619
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      GAACGTGTAGAACCTTTGGTCGCTAATTTCTCGGGCATTTTCTATGGGATTGTGTTCGCA 1679
consensus_3809#1      ------------------------------------------------------------
                                                                                  

consensus_3809#0      ACATTTGATTGAAAGACCTGCCTC 1703
consensus_3809#1      ------------------------