These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_382#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1686 fasta sequence [TCTCTCCTCACCGACGGCATCTCCAGCAGCACGGGCATTCCGGCGCCATGGGTCGGCGGCTGTTGCTGCTCTTCCTAATGCTGGCACAGGCACCCAATTCCAATGGGGATTCCAAGATAAAGAACGTGGTGGTGTTGGCGCTGGAGAACCGGTCGTTCGACCACATGCTGGGGTGGATGCAGCGGCTGCTGGGCCTCCCCATCGATGGCCTCACCGGCGCAGAGTGCAACCCGGCTCCAGGACCAGGTCCAGCCGACTCCCTCCTCCACTGCGTCTCCCCCGACGCCGACCTCGTCGTCCCCGACGACCCCGCCCACGCCTTCGAGGACGTCCTCGAGCAGCTGCTGGGGTTCCGACCCAATGACTCTACTGGCGCCGCCGCCTCCCCCTCAGACATGTCGGGCTTCGTCCGCAGCGCCGTCTCCGTGAGCGCGCTCCTGACCGACGCCGTCATGCGGGGGTTCACCCCGTCGCGGCTCCCGGCCTTCTCCGCGCTGGCCTCCTCCTTCGCGGTGTTCGACCGCTGGTTCTCCTCCATCCCGGGGCCCACGCAGCCCAACCGGCTGTTCCTCTACTCCGCCACCTCCCACGGCGCCGTCGCCCACGGCAAGTGGAACCTCCTCCGCGGCTACCCGCAGCGCACCATCTTTGACTCCCTCGCCGCCGACGCCCTCGACTACCGGGTCTACTTCAAGACCATCCCCACCACCCTCTTCTACCGCCGCCTCCGCACCGTCGCCAACGCCGCCCGCGGCACCTTCCGCCGCTACGACGCCGCCTTCCGCGACCACGCCCGCAGGGGCCTCCTCCCGGCGCTCTCCGTCATCGAGCCACGCTACTTCGACCTCACCGGCACGCCCGCCGACGACGACCACCCGGCGCACGACGTCGCCAACGGCCAGAGGCTGGTCAAGGACGTCTACGAGGCGCTGCGGGCGGGCCCGCAGTGGAACCACACACTGCTCATCATCACCTACGACGAGCACGGCGGCTTCTACGACCACGTCCCGCCGCCCAATGTCGGCGTCCCCAGCCCCGACGCCATCCGTGGCCCGCTGCCCTTCTTCTTCAGGTTCGACCGCCTCGGCGTCAGGGTGCCCACCATCATGGTGTCGCCGTGGATCAGGAAAGGGACGGTGGTGGGGAGGCCGCCGGGAGGGCCAACGCCCACGTCCGAGTACGAGCACTCCTCCATCCCGGCCACCATCAAGAAGATATTCAACCTCAGCTCCGACTTCCTCACCAGGAGGGATGCGTGGGCGGGCACCTTCGAGCACCTCTTCACGGACCTGGACGAGCCAAGGACGGATTGCCCGGAGACATTGCCGGAGATCCCGCCGCCATCTTCCTCGTCGTCGTCGACCAAGAAAGAAGACGGAGGATGGCTGTCGGACTTCCAGCGCGAGCTGGTGCAGCTGGCGGCCTTCCTCAACGGCGACTACATGCTGTCAAGCTTCGCACAGGAGTACGAGTCGAGAATGACGATGACGGTGAAGCAGGCGGATGCGTATGTGAGGCGAGCCGTCAAAAGTTTCCTGGAGGCCAGCAAGCGGGCCAAACGCTTAGGTGCAAACGACTCCGCCATTGTAACCATGAGACCATCCCTCACTACTGCAACCACCTGCTGCCCTTAGTTACCTACTGTAGTACACTAAACTAGTCTCTTTATTAATTTAATTAATTACC] [+] EMBL AK101065 [TCTCTCCTCACCGACGGCATCTCCAGCAGCACGGGCATTCCGGCGCCATGGGTCGGCGGCTGTTGCTGCTCTTCCTAATGCTGGCACAGGCACCCAATTCCAATGGGGATTCCAAGATAAAGAACGTGGTGGTGTTGGCGCTGGAGAACCGGTCGTTCGACCACATGCTGGGGTGGATGCAGCGGCTGCTGGGCCTCCCCATCGATGGCCTCACCGGCGCAGAGTGCAACCCGGCTCCAGGACCAGGTCCAGCCGACTCCCTCCTCCACTGCGTCTCCCCCGACGCCGACCTCGTCGTCCCCGACGACCCCGCCCACGCCTTCGAGGACGTCCTCGAGCAGCTGCTGGGGTTCCGACCCAATGACTCTACTGGCGCCGCCGCCTCCCCCTCAGACATGTCGGGCTTCGTCCGCAGCGCCGTCTCCGTGAGCGCGCTCCTGACCGACGCCGTCATGCGGGGGTTCACCCCGTCGCGGCTCCCGGCCTTCTCCGCGCTGGCCTCCTCCTTCGCGGTGTTCGACCGCTGGTTCTCCTCCATCCCGGGGCCCACGCAGCCCAACCGGCTGTTCCTCTACTCCGCCACCTCCCACGGCGCCGTCGCCCACGGCAAGTGGAACCTCCTCCGCGGCTACCCGCAGCGCACCATCTTTGACTCCCTCGCCGCCGACGCCCTCGACTACCGGGTCTACTTCAAGACCATCCCCACCACCCTCTTCTACCGCCGCCTCCGCACCGTCGCCAACGCCGCCCGCGGCACCTTCCGCCGCTACGACGCCGCCTTCCGCGACCACGCCCGCAGGGGCCTCCTCCCGGCGCTCTCCGTCATCGAGCCACGCTACTTCGACCTCACCGGCACGCCCGCCGACGACGACCACCCGGCGCACGACGTCGCCAACGGCCAGAGGCTGGTCAAGGACGTCTACGAGGCGCTGCGGGCGGGCCCGCAGTGGAACCACACACTGCTCATCATCACCTACGACGAGCACGGCGGCTTCTACGACCACGTCCCGCCGCCCAATGTCGGCGTCCCCAGCCCCGACGCCATCCGTGGCCCGCTGCCCTTCTTCTTCAGGTTCGACCGCCTCGGCGTCAGGGTGCCCACCATCATGGTGTCGCCGTGGATCAGGAAAGGGACGGTGGTGGGGAGGCCGCCGGGAGGGCCAACGCCCACGTCCGAGTACGAGCACTCCTCCATCCCGGCCACCATCAAGAAGATATTCAACCTCAGCTCCGACTTCCTCACCAGGAGGGATGCGTGGGCGGGCACCTTCGAGCACCTCTTCACGGACCTGGACGAGCCAAGGACGGATTGCCCGGAGACATTGCCGGAGATCCCGCCGCCATCTTCCTCGTCGTCGTCGACCAAGAAAGAAGACGGAGGATGGCTGTCGGACTTCCAGCGCGAGCTGGTGCAGCTGGCGGCCTTCCTCAACGGCGACTACATGCTGTCAAGCTTCGCACAGGAGTACGAGTCGAGAATGACGATGACGGTGAAGCAGGCGGATGCGTATGTGAGGCGAGCCGTCAAAAGTTTCCTGGAGGCCAGCAAGCGGGCCAAACGCTTAGGTGCAAACGACTCCGCCATTGTAACCATGAGACCATCCCTCACTACTGCAACCACCTGCTGCCCTTAGTTACCTACTGTAGTACACTAAACTAGTCTCTTTATTAATTTAATTAATTACC] consensusID : consensus_382#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [GTGGGAATCGGCGGAGCGGCAATCTCCGAGTGAGGGCAGCGGTAGCGCAGCGGTGCGCGCCGATGGCCGTTGTTGCCCGGCCGATCCCGTCCTTTCCGGTCGGGCGCCGTCCCCGGGCCCGTCCCGGAATATTGGATAGCGTGGCCCAGCCTGCGGCGGGTGCGGACCAGACCTGGCCGGACTCTGGCGGGCATCTTCATCCTTGCCTCGCGCAAAAAGACGAGCCAGGGTGCCCGTCCGGCTTCCAGCGCGAGTGGTGCGATCTGGCGGCATTGATTACCGCCGAATGCATCGTGTCCAGCTTGGCCCACGAGTGAGAGTCCAGAATACCTATGACGGTTAAGCAGGCGTATGCGTATGTCAGGCGAGGCGTCAAAAATTTAATGGAGGGCAGCAAGGGGGCCTAACGGTTAGGTGCAGGCGGCTCCGCCATTGTATCCCTGAGGCCATCCCTCAGTGCTGCAACCACCTGCTGCCCTTAGTTACCTTCTGTAGTACACTAAACTAGTCTCTTTATTAATTTAATTAATTACCTACCTTAGCTAATCCAATCCCCTACCCATATACTTACTACTGGAGCACTCCATTAGTTTAATTACTGTATATCGATGATCATATATATCACACAGATTTTCAGCCCAAAAAAAAAAA] [-] EMBL CA760238 [GTGGGAATCGGCGGAGCGGCAATCTCCGAGTGAGGGCAGCGGTAGCGCAGCGGTGCGCGCCGATGGCCGTTGTTGCCCGGCCGATCCCGTCCTTTCCGGTCGGGCGCCGTCCCCGGGCCCGTCCCGGAATATTGGATAGCGTGGCCCAGCCTGCGGCGGGTGCGGACCAGACCTGGCCGGACTCTGGCGGGCATCTTCATCCTTGCCTCGCGCAAAAAGACGAGCCAGGGTGCCCGTCCGGCTTCCAGCGCGAGTGGTGCGATCTGGCGGCATTGATTACCGCCGAATGCATCGTGTCCAGCTTGGCCCACGAGTGAGAGTCCAGAATACCTATGACGGTTAAGCAGGCGTATGCGTATGTCAGGCGAGGCGTCAAAAATTTAATGGAGGGCAGCAAGGGGGCCTAACGGTTAGGTGCAGGCGGCTCCGCCATTGTATCCCTGAGGCCATCCCTCAGTGCTGCAACCACCTGCTGCCCTTAGTTACCTTCTGTAGTACACTAAACTAGTCTCTTTATTAATTTAATTAATTACCTACCTTAGCTAATCCAATCCCCTACCCATATACTTACTACTGGAGCACTCCATTAGTTTAATTACTGTATATCGATGATCATATATATCACACAGATTTTCAGCCCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_382#0 TCTCTCCTCACCGACGGCATCTCCAGCAGCACGGGCATTCCGGCGCCATGGGTCGGCGGC 60 consensus_382#1 ------------------------------------------------------------ consensus_382#0 TGTTGCTGCTCTTCCTAATGCTGGCACAGGCACCCAATTCCAATGGGGATTCCAAGATAA 120 consensus_382#1 ------------------------------------------------------------ consensus_382#0 AGAACGTGGTGGTGTTGGCGCTGGAGAACCGGTCGTTCGACCACATGCTGGGGTGGATGC 180 consensus_382#1 ------------------------------------------------------------ consensus_382#0 AGCGGCTGCTGGGCCTCCCCATCGATGGCCTCACCGGCGCAGAGTGCAACCCGGCTCCAG 240 consensus_382#1 ------------------------------------------------------------ consensus_382#0 GACCAGGTCCAGCCGACTCCCTCCTCCACTGCGTCTCCCCCGACGCCGACCTCGTCGTCC 300 consensus_382#1 ------------------------------------------------------------ consensus_382#0 CCGACGACCCCGCCCACGCCTTCGAGGACGTCCTCGAGCAGCTGCTGGGGTTCCGACCCA 360 consensus_382#1 ------------------------------------------------------------ consensus_382#0 ATGACTCTACTGGCGCCGCCGCCTCCCCCTCAGACATGTCGGGCTTCGTCCGCAGCGCCG 420 consensus_382#1 ------------------------------------------------------------ consensus_382#0 TCTCCGTGAGCGCGCTCCTGACCGACGCCGTCATGCGGGGGTTCACCCCGTCGCGGCTCC 480 consensus_382#1 ------------------------------------------------------------ consensus_382#0 CGGCCTTCTCCGCGCTGGCCTCCTCCTTCGCGGTGTTCGACCGCTGGTTCTCCTCCATCC 540 consensus_382#1 ------------------------------------------------------------ consensus_382#0 CGGGGCCCACGCAGCCCAACCGGCTGTTCCTCTACTCCGCCACCTCCCACGGCGCCGTCG 600 consensus_382#1 ------------------------------------------------------------ consensus_382#0 CCCACGGCAAGTGGAACCTCCTCCGCGGCTACCCGCAGCGCACCATCTTTGACTCCCTCG 660 consensus_382#1 ------------------------------------------------------------ consensus_382#0 CCGCCGACGCCCTCGACTACCGGGTCTACTTCAAGACCATCCCCACCACCCTCTTCTACC 720 consensus_382#1 ------------------------------------------------------------ consensus_382#0 GCCGCCTCCGCACCGTCGCCAACGCCGCCCGCGGCACCTTCCGCCGCTACGACGCCGCCT 780 consensus_382#1 ------------------------------------------------------------ consensus_382#0 TCCGCGACCACGCCCGCAGGGGCCTCCTCCCGGCGCTCTCCGTCATCGAGCCACGCTACT 840 consensus_382#1 ------------------------------------------------------------ consensus_382#0 TCGACCTCACCGGCACGCCCGCCGACGACGACCACCCGGCGCACGACGTCGCCAACGGCC 900 consensus_382#1 ------------------------------------------------------------ consensus_382#0 AGAGGCTGGTCAAGGACGTCTACGAGGCGCTGCGGGCGGGCCCGCAGTGGAACCACACAC 960 consensus_382#1 ------------------------------------------------------------ consensus_382#0 TGCTCATCATCACCTACGACGAGCACGGCGGCTTCTACGACCACGTCCCGCCGCCCAATG 1020 consensus_382#1 ------------------------------------------------------------ consensus_382#0 TCGGCGTCCCCAGCCCCGACGCCATCCGTGGCCCGCTGCCCTTCTTCTTCAGGTTCGACC 1080 consensus_382#1 ------------------------------------------------------------ consensus_382#0 GCCTCGGCGTCAGGGTGCCCACCATCATGGTGTCGCCGTGGATCAGGAAAGGGACGGTGG 1140 consensus_382#1 ------------------------------------------------------------ consensus_382#0 TGGGGAGGCCGCCGGGAGGGCCAACGCCCACGTCCGAGTACGAGCACTCCTCCATCCCGG 1200 consensus_382#1 -GTGGGAATCGGCGG-AGCGGCAATCTCCGAGTGAGGGCAGCGGTAGCGCAGCGGTGCG- 57 * ** ** *** ** * *** ** ** * * * * * * * ** consensus_382#0 CCACCATCAAGAAGATATTCAACCTCAGCTCCGACTTCCTCACCAGGAGGGATGCGTGGG 1260 consensus_382#1 -CGCCGATG-GCCGTTGTTGCCCGGCCGATCC--CGTCCTTTCCGGTCGGGCGCCGTCCC 113 * ** * * * ** * * * *** * **** ** * *** *** consensus_382#0 CGGGCACCTTCGAGCACCTCTTCACGGACCTGGACGAGCCAAGGACGGATTGCCCGGAGA 1320 consensus_382#1 CGGGCCCGTCCCGGAA--TATTGGATAGCGTGGCCCAGCCTGCGGCGGGTGCGGACCAGA 171 ***** * * * * * * ** * *** * **** * *** * *** consensus_382#0 CATTGCCGGAGATCCCGCCGCCATCTTCCTCGTCGTCGTCGACCAAGAAAGAAGACGGAG 1380 consensus_382#1 CCTGGCCGGAC-TCTGGCGGGCATCTTCATCCTTGCC-TCGCGCAA-AAAGACGAGCCAG 228 * * ****** ** ** * ******* ** * * * *** *** ***** ** ** consensus_382#0 GATGGCTGTCGGACTTCCAGCGCGAGCTGGTGCAG-CTGGCGGCCTTCCTCAACGGCGAC 1439 consensus_382#1 GGTGCCCGTCCGGCTTCCAGCGCGAG-TGGTGCGATCTGGCGGCATTGATTACCGCCGAA 287 * ** * *** * ************* ****** ******** ** * * ** *** consensus_382#0 TACATGCTGTCAAGCTTCGCACAGGAGTACGAGTCGAGAATGACGATGACGGTGAAGCAG 1499 consensus_382#1 TGCATCGTGTCCAGCTTGGCCCACGAGTGAGAGTCCAGAATACCTATGACGGTTAAGCAG 347 * *** **** ***** ** ** **** ***** ***** * ******** ****** consensus_382#0 GCGGATGCGTATGTGAGGCGAGCCGTCAAAAGTTTCCTGGAGGCCAGCAAGCGGGCCAAA 1559 consensus_382#1 GCGTATGCGTATGTCAGGCGAGGCGTCAAAAATTTAATGGAGGGCAGCAAGGGGGCCTAA 407 *** ********** ******* ******** *** ****** ******* ***** ** consensus_382#0 CGCTTAGGTGCAAACGACTCCGCCATTGTAACCATGAGACCATCCCTCACTACTGCAACC 1619 consensus_382#1 CGGTTAGGTGCAGGCGGCTCCGCCATTGTATCCCTGAGGCCATCCCTCAGTGCTGCAACC 467 ** ********* ** ************* ** **** ********** * ******** consensus_382#0 ACCTGCTGCCCTTAGTTACCTACTGTAGTACACTAAACTAGTCTCTTTATTAATTTAATT 1679 consensus_382#1 ACCTGCTGCCCTTAGTTACCTTCTGTAGTACACTAAACTAGTCTCTTTATTAATTTAATT 527 ********************* ************************************** consensus_382#0 AATTACC----------------------------------------------------- 1686 consensus_382#1 AATTACCTACCTTAGCTAATCCAATCCCCTACCCATATACTTACTACTGGAGCACTCCAT 587 ******* consensus_382#0 ------------------------------------------------------------ consensus_382#1 TAGTTTAATTACTGTATATCGATGATCATATATATCACACAGATTTTCAGCCCAAAAAAA 647 consensus_382#0 ---- consensus_382#1 AAAA 651 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||