cluster # 3840

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Oryza sativa
cluster # 3840 cluster # 3840 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3840#0 length = 830 sequences # 1

consensus_3840#1 length = 739 sequences # 1

consensusID : consensus_3840#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 830
fasta sequence

                              [TGCCGCCGGCGGCGTCGATGATGGGTTCGTGTATAGTGGATTCTCAAGCAGTAGCAGCAACCTCGTCCTCGATGGTGCCGCGTACATTGGGGAAGACGGCATACTCACTCTGACGAATAGCACCGAGTACAATGCCCAGGGGCACTGCTTCCTCCCCCAGCCTGTTGCCCTCTTCAATTCTTCCTCTAAGGAGAGATATATTCGCACTCTCTTTATCTTCAGTATCACACCGGGCAACTTGTCCAGCATCTCCGGCCAGGGAATGGCCTTCATCGTCTCGCCTACCCAAAACTTCTCCGATGCTTCCTCCTGGTACGGGGACTCGTTATACTCGAACAAGCTCGCTGTGGAGCTCGACAGCGTCCATAGGATGGACAACGTTCGGGTTAATCTTGATAGCTTGACACCCATCGCTTCTAATCCTTCAGGTTTTGTTAATTACAACGATGACTTCCAACCTCTCAGCCTCACCAGTGGCGACCTGATGCAGGCATGGATAGACATGACCTATGACGGAGTAGGGTTATTGCTTGAGGTCACCTTGGCTCCGTTTCCAATGGACAAGCCTATCGCACCATTACTAAGGTGTTACCTCAACTCTTCAACCGCCACAGCTATTATCAGAGATCATGGGTACGTGTACATTGGTTTCTCAGCTTCCACCAGCTATGATAAAATTGCCACTCATCAGGTTCATGGCTGGAGCTTAATGATGAATGGACCGGCGAAACCGCTGGACTATCAGTCGATAATGGCACACGTTCATAGACCACGTGCCAACCAGTACCGGAGCTTGCTCAGATGGTTGCCGGCGACCTTGTCCTTTTCTC]

[+] EMBL CB634886             [TGCCGCCGGCGGCGTCGATGATGGGTTCGTGTATAGTGGATTCTCAAGCAGTAGCAGCAACCTCGTCCTCGATGGTGCCGCGTACATTGGGGAAGACGGCATACTCACTCTGACGAATAGCACCGAGTACAATGCCCAGGGGCACTGCTTCCTCCCCCAGCCTGTTGCCCTCTTCAATTCTTCCTCTAAGGAGAGATATATTCGCACTCTCTTTATCTTCAGTATCACACCGGGCAACTTGTCCAGCATCTCCGGCCAGGGAATGGCCTTCATCGTCTCGCCTACCCAAAACTTCTCCGATGCTTCCTCCTGGTACGGGGACTCGTTATACTCGAACAAGCTCGCTGTGGAGCTCGACAGCGTCCATAGGATGGACAACGTTCGGGTTAATCTTGATAGCTTGACACCCATCGCTTCTAATCCTTCAGGTTTTGTTAATTACAACGATGACTTCCAACCTCTCAGCCTCACCAGTGGCGACCTGATGCAGGCATGGATAGACATGACCTATGACGGAGTAGGGTTATTGCTTGAGGTCACCTTGGCTCCGTTTCCAATGGACAAGCCTATCGCACCATTACTAAGGTGTTACCTCAACTCTTCAACCGCCACAGCTATTATCAGAGATCATGGGTACGTGTACATTGGTTTCTCAGCTTCCACCAGCTATGATAAAATTGCCACTCATCAGGTTCATGGCTGGAGCTTAATGATGAATGGACCGGCGAAACCGCTGGACTATCAGTCGATAATGGCACACGTTCATAGACCACGTGCCAACCAGTACCGGAGCTTGCTCAGATGGTTGCCGGCGACCTTGTCCTTTTCTC]




>consensus_3840#0
TGCCGCCGGCGGCGTCGATGATGGGTTCGTGTATAGTGGATTCTCAAGCAGTAGCAGCAA
CCTCGTCCTCGATGGTGCCGCGTACATTGGGGAAGACGGCATACTCACTCTGACGAATAG
CACCGAGTACAATGCCCAGGGGCACTGCTTCCTCCCCCAGCCTGTTGCCCTCTTCAATTC
TTCCTCTAAGGAGAGATATATTCGCACTCTCTTTATCTTCAGTATCACACCGGGCAACTT
GTCCAGCATCTCCGGCCAGGGAATGGCCTTCATCGTCTCGCCTACCCAAAACTTCTCCGA
TGCTTCCTCCTGGTACGGGGACTCGTTATACTCGAACAAGCTCGCTGTGGAGCTCGACAG
CGTCCATAGGATGGACAACGTTCGGGTTAATCTTGATAGCTTGACACCCATCGCTTCTAA
TCCTTCAGGTTTTGTTAATTACAACGATGACTTCCAACCTCTCAGCCTCACCAGTGGCGA
CCTGATGCAGGCATGGATAGACATGACCTATGACGGAGTAGGGTTATTGCTTGAGGTCAC
CTTGGCTCCGTTTCCAATGGACAAGCCTATCGCACCATTACTAAGGTGTTACCTCAACTC
TTCAACCGCCACAGCTATTATCAGAGATCATGGGTACGTGTACATTGGTTTCTCAGCTTC
CACCAGCTATGATAAAATTGCCACTCATCAGGTTCATGGCTGGAGCTTAATGATGAATGG
ACCGGCGAAACCGCTGGACTATCAGTCGATAATGGCACACGTTCATAGACCACGTGCCAA
CCAGTACCGGAGCTTGCTCAGATGGTTGCCGGCGACCTTGTCCTTTTCTC

consensusID : consensus_3840#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 739
fasta sequence

                              [ATCTTCATCAAAGAGGTTGCCGTAGGCGGCGTCGATGATGGGTTCGTGTATAGTGGATTCTCAAGCAGTAGCAGCAATCTCAAAATCGATGGTGCCGCGTACATTGGGGAAGACGGCATACTCACTCTGACGAATAGCACCGAGTACAATGCCCAGGGGCACTGCTTCCTCCCCCAGCCTGTTGCCCTCTTCAATTCTTCCTCTAAGGAGAGATATATTCGCACTCTCTTTATCTTCAGTATCACACCGGGCAACTTGTCCAGCATCTCCGGCCAGGGAATGGCCTTCATCGTCTCTCCTACCCAAAACTTCTCCGATGCTTCCTCCTGGTTTTGTTAATTACAACGATGACTTCCAACCTCTCAGCCTCACCAGTGGCGACCTGATGCAGGCATGGATAGACATGACCTATGACGGAGTAGGGTTATTGCTTGAGGTCACCTTGGCTCCGTTTCCAATGGACAAGCCTATCGCACCATTACTAAGGTGTTACCTCAACTCTTCAACCGCCACAGCTATTATCAGAGATCATGGGTACGTGTACATTGGTTTCTCAGCTTCCACCAGCTATGATAAAATTGCCACTCATCAGGTTCATGGCTGGAGCTTAATGATGAATGGACCGGCGAAACCGCTGGACTATCAGTCGATAATGGCACACGTTCATAGACCACGTGCCAACCAGTACCGGAGCTTGCTCAGATGGTTGCCGGCGACCTTGTTCTTTTCTTCTCCTTCT]

[+] EMBL CB634230             [ATCTTCATCAAAGAGGTTGCCGTAGGCGGCGTCGATGATGGGTTCGTGTATAGTGGATTCTCAAGCAGTAGCAGCAATCTCAAAATCGATGGTGCCGCGTACATTGGGGAAGACGGCATACTCACTCTGACGAATAGCACCGAGTACAATGCCCAGGGGCACTGCTTCCTCCCCCAGCCTGTTGCCCTCTTCAATTCTTCCTCTAAGGAGAGATATATTCGCACTCTCTTTATCTTCAGTATCACACCGGGCAACTTGTCCAGCATCTCCGGCCAGGGAATGGCCTTCATCGTCTCTCCTACCCAAAACTTCTCCGATGCTTCCTCCTGGTTTTGTTAATTACAACGATGACTTCCAACCTCTCAGCCTCACCAGTGGCGACCTGATGCAGGCATGGATAGACATGACCTATGACGGAGTAGGGTTATTGCTTGAGGTCACCTTGGCTCCGTTTCCAATGGACAAGCCTATCGCACCATTACTAAGGTGTTACCTCAACTCTTCAACCGCCACAGCTATTATCAGAGATCATGGGTACGTGTACATTGGTTTCTCAGCTTCCACCAGCTATGATAAAATTGCCACTCATCAGGTTCATGGCTGGAGCTTAATGATGAATGGACCGGCGAAACCGCTGGACTATCAGTCGATAATGGCACACGTTCATAGACCACGTGCCAACCAGTACCGGAGCTTGCTCAGATGGTTGCCGGCGACCTTGTTCTTTTCTTCTCCTTCT]




>consensus_3840#1
ATCTTCATCAAAGAGGTTGCCGTAGGCGGCGTCGATGATGGGTTCGTGTATAGTGGATTC
TCAAGCAGTAGCAGCAATCTCAAAATCGATGGTGCCGCGTACATTGGGGAAGACGGCATA
CTCACTCTGACGAATAGCACCGAGTACAATGCCCAGGGGCACTGCTTCCTCCCCCAGCCT
GTTGCCCTCTTCAATTCTTCCTCTAAGGAGAGATATATTCGCACTCTCTTTATCTTCAGT
ATCACACCGGGCAACTTGTCCAGCATCTCCGGCCAGGGAATGGCCTTCATCGTCTCTCCT
ACCCAAAACTTCTCCGATGCTTCCTCCTGGTTTTGTTAATTACAACGATGACTTCCAACC
TCTCAGCCTCACCAGTGGCGACCTGATGCAGGCATGGATAGACATGACCTATGACGGAGT
AGGGTTATTGCTTGAGGTCACCTTGGCTCCGTTTCCAATGGACAAGCCTATCGCACCATT
ACTAAGGTGTTACCTCAACTCTTCAACCGCCACAGCTATTATCAGAGATCATGGGTACGT
GTACATTGGTTTCTCAGCTTCCACCAGCTATGATAAAATTGCCACTCATCAGGTTCATGG
CTGGAGCTTAATGATGAATGGACCGGCGAAACCGCTGGACTATCAGTCGATAATGGCACA
CGTTCATAGACCACGTGCCAACCAGTACCGGAGCTTGCTCAGATGGTTGCCGGCGACCTT
GTTCTTTTCTTCTCCTTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3840#0      -----------------TGCCGCCGGCGGCGTCGATGATGGGTTCGTGTATAGTGGATTC 43
consensus_3840#1      ATCTTCATCAAAGAGGTTGCCGTAGGCGGCGTCGATGATGGGTTCGTGTATAGTGGATTC 60
                                       *****  ************************************

consensus_3840#0      TCAAGCAGTAGCAGCAACCTCGTCCTCGATGGTGCCGCGTACATTGGGGAAGACGGCATA 103
consensus_3840#1      TCAAGCAGTAGCAGCAATCTCAAAATCGATGGTGCCGCGTACATTGGGGAAGACGGCATA 120
                      ***************** ***    ***********************************

consensus_3840#0      CTCACTCTGACGAATAGCACCGAGTACAATGCCCAGGGGCACTGCTTCCTCCCCCAGCCT 163
consensus_3840#1      CTCACTCTGACGAATAGCACCGAGTACAATGCCCAGGGGCACTGCTTCCTCCCCCAGCCT 180
                      ************************************************************

consensus_3840#0      GTTGCCCTCTTCAATTCTTCCTCTAAGGAGAGATATATTCGCACTCTCTTTATCTTCAGT 223
consensus_3840#1      GTTGCCCTCTTCAATTCTTCCTCTAAGGAGAGATATATTCGCACTCTCTTTATCTTCAGT 240
                      ************************************************************

consensus_3840#0      ATCACACCGGGCAACTTGTCCAGCATCTCCGGCCAGGGAATGGCCTTCATCGTCTCGCCT 283
consensus_3840#1      ATCACACCGGGCAACTTGTCCAGCATCTCCGGCCAGGGAATGGCCTTCATCGTCTCTCCT 300
                      ******************************************************** ***

consensus_3840#0      ACCCAAAACTTCTCCGATGCTTCCTCCTGGTACGGGGACTCGTTATACTCGAACAAGCTC 343
consensus_3840#1      ACCCAAAACTTCTCCGATGCTTCCTCCTGGT----------------------------- 331
                      *******************************                             

consensus_3840#0      GCTGTGGAGCTCGACAGCGTCCATAGGATGGACAACGTTCGGGTTAATCTTGATAGCTTG 403
consensus_3840#1      ------------------------------------------------------------
                                                                                  

consensus_3840#0      ACACCCATCGCTTCTAATCCTTCAGGTTTTGTTAATTACAACGATGACTTCCAACCTCTC 463
consensus_3840#1      ---------------------------TTTGTTAATTACAACGATGACTTCCAACCTCTC 364
                                                 *********************************

consensus_3840#0      AGCCTCACCAGTGGCGACCTGATGCAGGCATGGATAGACATGACCTATGACGGAGTAGGG 523
consensus_3840#1      AGCCTCACCAGTGGCGACCTGATGCAGGCATGGATAGACATGACCTATGACGGAGTAGGG 424
                      ************************************************************

consensus_3840#0      TTATTGCTTGAGGTCACCTTGGCTCCGTTTCCAATGGACAAGCCTATCGCACCATTACTA 583
consensus_3840#1      TTATTGCTTGAGGTCACCTTGGCTCCGTTTCCAATGGACAAGCCTATCGCACCATTACTA 484
                      ************************************************************

consensus_3840#0      AGGTGTTACCTCAACTCTTCAACCGCCACAGCTATTATCAGAGATCATGGGTACGTGTAC 643
consensus_3840#1      AGGTGTTACCTCAACTCTTCAACCGCCACAGCTATTATCAGAGATCATGGGTACGTGTAC 544
                      ************************************************************

consensus_3840#0      ATTGGTTTCTCAGCTTCCACCAGCTATGATAAAATTGCCACTCATCAGGTTCATGGCTGG 703
consensus_3840#1      ATTGGTTTCTCAGCTTCCACCAGCTATGATAAAATTGCCACTCATCAGGTTCATGGCTGG 604
                      ************************************************************

consensus_3840#0      AGCTTAATGATGAATGGACCGGCGAAACCGCTGGACTATCAGTCGATAATGGCACACGTT 763
consensus_3840#1      AGCTTAATGATGAATGGACCGGCGAAACCGCTGGACTATCAGTCGATAATGGCACACGTT 664
                      ************************************************************

consensus_3840#0      CATAGACCACGTGCCAACCAGTACCGGAGCTTGCTCAGATGGTTGCCGGCGACCTTGTCC 823
consensus_3840#1      CATAGACCACGTGCCAACCAGTACCGGAGCTTGCTCAGATGGTTGCCGGCGACCTTGTTC 724
                      ********************************************************** *

consensus_3840#0      TTTTCTC-------- 830
consensus_3840#1      TTTTCTTCTCCTTCT 739
                      ******