cluster # 3846

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Oryza sativa
cluster # 3846 cluster # 3846 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3846#0 length = 454 sequences # 1

consensus_3846#1 length = 397 sequences # 1

consensusID : consensus_3846#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [TGCTGGCCGGAACCCTAGCCACGGCGGCACGGCACGGCGGCAGGGCGGCACGGCGCGGCGGCGCCGTCGCACCCCCCTTTGCCGGCGCGCGCACTCACCCGAGAGTGAGTGCGCCGCCGTCGAGCGGCTGTGCAGCGGCGCCCGGCAAGCCGGCGGCGCGGCGCCGCCCCCTCTTTTCTCTCCCGCGTCGGCGTGAGGACGACCGGTGGTGGCATGACTCCCGCGCGCGTCGGCGGCGGCCGGCGGCGGCGGTAGGCATCTTCGACGCGAATGAGAACATTCAGTTGCCGCAAGCGCCATCGCATCACCGAGCCGCCCCCATCGATGCGTCTAGGGGAGTACTATCAGATGACCTAATTTAACCTGGTTTTGTAAGTTTGGGTTTTTGGTAAATATGAGAGACCAAAAGTGAACTTATTGCAAGCCTGAATGATATATTACTTGGGCCGGATTA]

[+] EMBL AK107808             [TGCTGGCCGGAACCCTAGCCACGGCGGCACGGCACGGCGGCAGGGCGGCACGGCGCGGCGGCGCCGTCGCACCCCCCTTTGCCGGCGCGCGCACTCACCCGAGAGTGAGTGCGCCGCCGTCGAGCGGCTGTGCAGCGGCGCCCGGCAAGCCGGCGGCGCGGCGCCGCCCCCTCTTTTCTCTCCCGCGTCGGCGTGAGGACGACCGGTGGTGGCATGACTCCCGCGCGCGTCGGCGGCGGCCGGCGGCGGCGGTAGGCATCTTCGACGCGAATGAGAACATTCAGTTGCCGCAAGCGCCATCGCATCACCGAGCCGCCCCCATCGATGCGTCTAGGGGAGTACTATCAGATGACCTAATTTAACCTGGTTTTGTAAGTTTGGGTTTTTGGTAAATATGAGAGACCAAAAGTGAACTTATTGCAAGCCTGAATGATATATTACTTGGGCCGGATTA]




>consensus_3846#0
TGCTGGCCGGAACCCTAGCCACGGCGGCACGGCACGGCGGCAGGGCGGCACGGCGCGGCG
GCGCCGTCGCACCCCCCTTTGCCGGCGCGCGCACTCACCCGAGAGTGAGTGCGCCGCCGT
CGAGCGGCTGTGCAGCGGCGCCCGGCAAGCCGGCGGCGCGGCGCCGCCCCCTCTTTTCTC
TCCCGCGTCGGCGTGAGGACGACCGGTGGTGGCATGACTCCCGCGCGCGTCGGCGGCGGC
CGGCGGCGGCGGTAGGCATCTTCGACGCGAATGAGAACATTCAGTTGCCGCAAGCGCCAT
CGCATCACCGAGCCGCCCCCATCGATGCGTCTAGGGGAGTACTATCAGATGACCTAATTT
AACCTGGTTTTGTAAGTTTGGGTTTTTGGTAAATATGAGAGACCAAAAGTGAACTTATTG
CAAGCCTGAATGATATATTACTTGGGCCGGATTA

consensusID : consensus_3846#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [ACGGCACGGCGGCAGGGCGGCACGGCGCGGCGGCGCCGTCGCACCCCCCTTTGCCGGCGCGCGCACTCACCCGAGAGTGAGTGCGCCGCCGTCGAGCGGCTGTGCAGCGGCGCCCGGCAAGCCGGCGGCGCGGCGCCGCCCCCTCTTTTCTCTCCCGCGTCGGCGTGAGGACGACCGGTGGTGGCATGACTCCCGCGCGCGTCGGCGGCGGCCGGCGGCGGCGGTAGGTGAGTCTTTTCTTTTCGACCCGTGCGGATCGTGTGCTGTTCTTTCTTTTGCTCTTTTCCGGGGATCAATTCCCCTCTTCTTTTTATTTGGATTTCTATCCCCGAACCGATCTAAGCCCTAGGGTTGGTCTGATACCATTGTTAGAGTTCTCTGTTGGATCACCTAAAAA]

[+] EMBL AU183144             [ACGGCACGGCGGCAGGGCGGCACGGCGCGGCGGCGCCGTCGCACCCCCCTTTGCCGGCGCGCGCACTCACCCGAGAGTGAGTGCGCCGCCGTCGAGCGGCTGTGCAGCGGCGCCCGGCAAGCCGGCGGCGCGGCGCCGCCCCCTCTTTTCTCTCCCGCGTCGGCGTGAGGACGACCGGTGGTGGCATGACTCCCGCGCGCGTCGGCGGCGGCCGGCGGCGGCGGTAGGTGAGTCTTTTCTTTTCGACCCGTGCGGATCGTGTGCTGTTCTTTCTTTTGCTCTTTTCCGGGGATCAATTCCCCTCTTCTTTTTATTTGGATTTCTATCCCCGAACCGATCTAAGCCCTAGGGTTGGTCTGATACCATTGTTAGAGTTCTCTGTTGGATCACCTAAAAA]




>consensus_3846#1
ACGGCACGGCGGCAGGGCGGCACGGCGCGGCGGCGCCGTCGCACCCCCCTTTGCCGGCGC
GCGCACTCACCCGAGAGTGAGTGCGCCGCCGTCGAGCGGCTGTGCAGCGGCGCCCGGCAA
GCCGGCGGCGCGGCGCCGCCCCCTCTTTTCTCTCCCGCGTCGGCGTGAGGACGACCGGTG
GTGGCATGACTCCCGCGCGCGTCGGCGGCGGCCGGCGGCGGCGGTAGGTGAGTCTTTTCT
TTTCGACCCGTGCGGATCGTGTGCTGTTCTTTCTTTTGCTCTTTTCCGGGGATCAATTCC
CCTCTTCTTTTTATTTGGATTTCTATCCCCGAACCGATCTAAGCCCTAGGGTTGGTCTGA
TACCATTGTTAGAGTTCTCTGTTGGATCACCTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3846#0      TGCTGGCCGGAACCCTAGCCACGGCGGCACGGCACGGCGGCAGGGCGGCACGGCGCGGCG 60
consensus_3846#1      ----------------------------ACGGCACGGCGGCAGGGCGGCACGGCGCGGCG 32
                                                  ********************************

consensus_3846#0      GCGCCGTCGCACCCCCCTTTGCCGGCGCGCGCACTCACCCGAGAGTGAGTGCGCCGCCGT 120
consensus_3846#1      GCGCCGTCGCACCCCCCTTTGCCGGCGCGCGCACTCACCCGAGAGTGAGTGCGCCGCCGT 92
                      ************************************************************

consensus_3846#0      CGAGCGGCTGTGCAGCGGCGCCCGGCAAGCCGGCGGCGCGGCGCCGCCCCCTCTTTTCTC 180
consensus_3846#1      CGAGCGGCTGTGCAGCGGCGCCCGGCAAGCCGGCGGCGCGGCGCCGCCCCCTCTTTTCTC 152
                      ************************************************************

consensus_3846#0      TCCCGCGTCGGCGTGAGGACGACCGGTGGTGGCATGACTCCCGCGCGCGTCGGCGGCGGC 240
consensus_3846#1      TCCCGCGTCGGCGTGAGGACGACCGGTGGTGGCATGACTCCCGCGCGCGTCGGCGGCGGC 212
                      ************************************************************

consensus_3846#0      CGGCGGCGGCGGTAGGCA---------TCTTCGACGCGAATGAGA-ACATTCAGTTGCCG 290
consensus_3846#1      CGGCGGCGGCGGTAGGTGAGTCTTTTCTTTTCGACCCGTGCGGATCGTGTGCTGTTCTTT 272
                      ****************           * ****** **   *       * * ***    

consensus_3846#0      CAAGCGCCATCGCATCACCGAGCCGCCCCCATCGATGCGTCTAGGGGAGTACTATCAGAT 350
consensus_3846#1      CTTTTGCTCTT-TTCCGGGGATCAATTCCCCTCTTCTTTTTATTTGGATTTCTATC---- 327
                      *    **  *     *   ** *    *** **      *     *** * *****    

consensus_3846#0      GACCTAATTTAACCTGGTTTTGTAAGTTTGGGTTTTTGGTAAATATGAGAGACCAAAAGT 410
consensus_3846#1      --CCCGAACCGATCTAAGCCCTAGGGTT--GGTCTGATACCATTGTTAGAGTTCTCTGTT 383
                        **  *    * **          ***  *** *      * * * ****  *     *

consensus_3846#0      GAACTTATTGCAAGCCTGAATGATATATTACTTGGGCCGGATTA 454
consensus_3846#1      GGATCACCTAAAAA------------------------------ 397
                      * *     *  **