These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [TTTTTTTTTTTTGCACGAGCTATTTTGCGTTTTGCCTTCTCTGTTGGAGACAGTCTCACAAAGGGAAAATGGACATGCTGCTGCAGCCTGCAAAAAATTTGATCAGCTTCCTTCCAAATGGAGATTTCCATCCTTGATGTCAGCAAATAGTTGGGCTGCTGTGCTTGTCTTCTCGTCGATAACCACCAGTCCACCACCCACTGAGCTCTAAGTTCAGGTCCCCTGGCAATTGGAAGGAGATACCCAGCCAGCTCTATAAGCAATCTCCACACCCTGTTTGAGTAGGGACAGGACACAATCAGATGAAACAATCTTTGTCAGCTGATGCACATAGAGCATCTTTGTTGGTGATCCACAGTTAGACATCTCCCTCTTGTCACCAACCAAATAAAAAACTTGACTGTAGAAGGCGCTTTTGTTGTCAAAATCATCTTGCCACAACTTATTTAATTTGGCCACAAAAAACATATCATACGCAGAGACACTGAGAAGCTACCAATAGACTAATTATCACTACCCTAATGTAGGCCGATATAAAAACACAAGACTGAACCTACCTCCTAGCATGAATAGAGTCATGGATGGAGAAATATTGAGGCAAATTAAGAGGGAATTGAATCCTTTGCTTCAGATAAGACCAATGATATCATTCTTCCACTCAGGATTCCNAGTGAATTTTACCGATCTCACCAT] [+] EMBL CA760230 [TTTTTTTTTTTTGCACGAGCTATTTTGCGTTTTGCCTTCTCTGTTGGAGACAGTCTCACAAAGGGAAAATGGACATGCTGCTGCAGCCTGCAAAAAATTTGATCAGCTTCCTTCCAAATGGAGATTTCCATCCTTGATGTCAGCAAATAGTTGGGCTGCTGTGCTTGTCTTCTCGTCGATAACCACCAGTCCACCACCCACTGAGCTCTAAGTTCAGGTCCCCTGGCAATTGGAAGGAGATACCCAGCCAGCTCTATAAGCAATCTCCACACCCTGTTTGAGTAGGGACAGGACACAATCAGATGAAACAATCTTTGTCAGCTGATGCACATAGAGCATCTTTGTTGGTGATCCACAGTTAGACATCTCCCTCTTGTCACCAACCAAATAAAAAACTTGACTGTAGAAGGCGCTTTTGTTGTCAAAATCATCTTGCCACAACTTATTTAATTTGGCCACAAAAAACATATCATACGCAGAGACACTGAGAAGCTACCAATAGACTAATTATCACTACCCTAATGTAGGCCGATATAAAAACACAAGACTGAACCTACCTCCTAGCATGAATAGAGTCATGGATGGAGAAATATTGAGGCAAATTAAGAGGGAATTGAATCCTTTGCTTCAGATAAGACCAATGATATCATTCTTCCACTCAGGATTCCNAGTGAATTTTACCGATCTCACCAT] consensusID : consensus_385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [TTTTTTTACTTTGCCCCTCTCCTCTCTCTCTCCCCTCTCTTCCTTTCCCCCATCGGCCACACGAGAGAGCCGGGGGAGATGGAGGACTTTGTTTATACATTGACTCTTTTTACTTTTCCCCTATACTCTCTTTCTCCCCGCTCTTCCTTTCCCCCACCGGCCACCGAGAGAGCCTGGGGAGAAGGAGGACTTTTTCTTCACCTGAGCTCTATTTACTTTTCCCCTGTCCACTGTATGGACACACTCTGCCATTCCCCATAAGCAACACCCACACACTGTTTGAAGAGGGACGGGACTCTATTAAATGAAACAATTTTTGCCAGCCCACGCACCTAGAGCACCCTTTTTGGTGACCCACAGGTACACATATACATCTTGGCAAAACCAGAGGAAAAACTTGACTGTAGAAGGCGCTATTGTTGCCAAAATCATCTTGCCACAACTTATTTAATTTGGCCACAAAAAACATATCAGACGCAGAGACACTGAGAAGGCTCCAATAGACTAATTATCACTACCCTAATGCCGGCCGATATAAAAACACAAGACTGAACCTACCTCCTAGCATGAATAGAGGCATGGATGGAGAAATATCGAGGCATATTAAGAGGGGAATGAATCCTTTGCTTCAGATAAGACCAAGGATAGCATTCTCCCACTTGGGATTCCGAGTGAATTTTACC] [+] EMBL CA760536 [TTTTTTTACTTTGCCCCTCTCCTCTCTCTCTCCCCTCTCTTCCTTTCCCCCATCGGCCACACGAGAGAGCCGGGGGAGATGGAGGACTTTGTTTATACATTGACTCTTTTTACTTTTCCCCTATACTCTCTTTCTCCCCGCTCTTCCTTTCCCCCACCGGCCACCGAGAGAGCCTGGGGAGAAGGAGGACTTTTTCTTCACCTGAGCTCTATTTACTTTTCCCCTGTCCACTGTATGGACACACTCTGCCATTCCCCATAAGCAACACCCACACACTGTTTGAAGAGGGACGGGACTCTATTAAATGAAACAATTTTTGCCAGCCCACGCACCTAGAGCACCCTTTTTGGTGACCCACAGGTACACATATACATCTTGGCAAAACCAGAGGAAAAACTTGACTGTAGAAGGCGCTATTGTTGCCAAAATCATCTTGCCACAACTTATTTAATTTGGCCACAAAAAACATATCAGACGCAGAGACACTGAGAAGGCTCCAATAGACTAATTATCACTACCCTAATGCCGGCCGATATAAAAACACAAGACTGAACCTACCTCCTAGCATGAATAGAGGCATGGATGGAGAAATATCGAGGCATATTAAGAGGGGAATGAATCCTTTGCTTCAGATAAGACCAAGGATAGCATTCTCCCACTTGGGATTCCGAGTGAATTTTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_385#0 TTTTTTTTTTTTGCACGAGCTATTTTGCGTTTTGCCTTCTCTGTTGGAGACAGTC-TCAC 59 consensus_385#1 TTTTTTTACTTTGCCCCTCTCCTCTCTCTCTCCCCTCTCTTCCTTTCCCCCATCGGCCAC 60 ******* ***** * * * * * * *** ** ** *** consensus_385#0 AAAGGGAAAATGGACATGCTGCTGCAGCCTGCAAAAAATTTGATCAGCTTCCTTCCAAAT 119 consensus_385#1 ACGAGAGAGCCGGGGGAGATGGAGGACTTTGTTTATACATTGACTCTTTTTACTTTTCCC 120 * * * ** * ** * * ** * * **** ** * consensus_385#0 GGAGATTTCCATCCTTGATGTCAGCAAATAGTTGGGCTGCTGTGCTTGTCTTCTCGTCGA 179 consensus_385#1 CTATACTCTCTTTCTCCCCGCTCTTCCTTTCCCCCACCGGCCACCGAGAGAGCCTGGGGA 180 * * * * * ** * * * * * * * * ** consensus_385#0 TAACCACCAGTCCACCACCCACTGAGCTCTAAGTTCAGGTCCCCTGGCAATTGGAAGGAG 239 consensus_385#1 GAAGGAGGACTTTTTCTTCACCTGAGCTCTATTTACTTTTCCCCTGTCCACTGTATGGAC 240 ** * * * * * ********** * * ******* * * ** * *** consensus_385#0 ATACCCAGCCAG-CTCTATAAGCAATCTCCACACCCTGTTTGAGTAGGGACAGGACACAA 298 consensus_385#1 ACACTCTGCCATTCCCCATAAGCAACACCCACACACTGTTTGAAGAGGGACGGGACTCTA 300 * ** * **** * * ******** ****** ******** ****** **** * * consensus_385#0 TCAGATGAAACAATCTTTGTCAGCTGATGCACATAGAGCATCTTTGTTGGTGATCCACAG 358 consensus_385#1 TTAAATGAAACAATTTTTGCCAGCCCACGCACCTAGAGCACCCTTTTTGGTGACCCACAG 360 * * ********** **** **** * **** ******* * ** ******* ****** consensus_385#0 TTAGACATCTCCCTCTTGTCACCAACCAAATAAAAAACTTGACTGTAGAAGGCGCTTTTG 418 consensus_385#1 GTACACATATACATCTTGGCAA-AACCAGAGGAAAAACTTGACTGTAGAAGGCGCTATTG 419 ** **** * * ***** ** ***** * ************************ *** consensus_385#0 TTGTCAAAATCATCTTGCCACAACTTATTTAATTTGGCCACAAAAAACATATCATACGCA 478 consensus_385#1 TTGCCAAAATCATCTTGCCACAACTTATTTAATTTGGCCACAAAAAACATATCAGACGCA 479 *** ************************************************** ***** consensus_385#0 GAGACACTGAGAAGCTACCAATAGACTAATTATCACTACCCTAATGTAGGCCGATATAAA 538 consensus_385#1 GAGACACTGAGAAGGCTCCAATAGACTAATTATCACTACCCTAATGCCGGCCGATATAAA 539 ************** ***************************** ************ consensus_385#0 AACACAAGACTGAACCTACCTCCTAGCATGAATAGAGTCATGGATGGAGAAATATTGAGG 598 consensus_385#1 AACACAAGACTGAACCTACCTCCTAGCATGAATAGAGGCATGGATGGAGAAATATCGAGG 599 ************************************* ***************** **** consensus_385#0 CAAATTAAGAGGGAATTGAATCCTTTGCTTCAGATAAGACCAATGATATCATTCTTCCAC 658 consensus_385#1 CATATTAAGAGGGGAATGAATCCTTTGCTTCAGATAAGACCAAGGATAGCATTCTCCCAC 659 ** ********** * *************************** **** ****** **** consensus_385#0 TCAGGATTCCNAGTGAATTTTACCGATCTCACCAT 693 consensus_385#1 TTGGGATTCCGAGTGAATTTTACC----------- 683 * ******* ************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||