These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3854#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [TATCTGAGTTGGAACGGAGACGACTGGCCAACATTGCCAGAAACAATGAGTATTTACAAGAATTGGGACTCAGTGCAAANTCAGCTCGNCAGACAAANCGTCCACCTACCGGTAANGTTATCCAGNCCATGCGTATACAAAATNGGANGGTGGNGGACGNGATAGGCNNTCGNCGCTCTTCGAGAATCGCTAGCCTANCCGCCACGNTAAACTACANCGNNGAAATCCTCAGTCGNACACGTCCCAGNCACTCTGGAGGCATNGGGCCATCGCTTACTCATGTCGNCACGGATGTTGTGTCTGACTTNACGGTCGGTGTCTTCGTTGGTTTGAATCCGGGTAGTAAAGGTG] [+] EMBL OSR3232A [TATCTGAGTTGGAACGGAGACGACTGGCCAACATTGCCAGAAACAATGAGTATTTACAAGAATTGGGACTCAGTGCAAANTCAGCTCGNCAGACAAANCGTCCACCTACCGGTAANGTTATCCAGNCCATGCGTATACAAAATNGGANGGTGGNGGACGNGATAGGCNNTCGNCGCTCTTCGAGAATCGCTAGCCTANCCGCCACGNTAAACTACANCGNNGAAATCCTCAGTCGNACACGTCCCAGNCACTCTGGAGGCATNGGGCCATCGCTTACTCATGTCGNCACGGATGTTGTGTCTGACTTNACGGTCGGTGTCTTCGTTGGTTTGAATCCGGGTAGTAAAGGTG] consensusID : consensus_3854#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [TTATCTGAGTTGGAACGGAGACGACTGGCCAACATTGCCAGAAACAATGAGTATTTACAAGAATTGGGACTCAGTGCAAAATCAGCTCGACAGACAAAACGTCCACCTACCGGTAAAGTTATCCAGACCATGCGTATACAAAATTGGAAGGTGGAGGACGAGATAGGCGCTCGACGCTCTTCGAGAATCGCTAGCCTACCCGCCACGGTAAACTACACCGAAGAAATCCTCAGTCGAACACGTCCCAGACACTCTGGAGGCATGGGGCCATCGCTTACTCATGTCGACACGGATGTNGTGTCTGACTTGACGGTCCGGTGTCTTCGTTGGGTTNAATCCCG] [+] EMBL OSR3241A [TTATCTGAGTTGGAACGGAGACGACTGGCCAACATTGCCAGAAACAATGAGTATTTACAAGAATTGGGACTCAGTGCAAAATCAGCTCGACAGACAAAACGTCCACCTACCGGTAAAGTTATCCAGACCATGCGTATACAAAATTGGAAGGTGGAGGACGAGATAGGCGCTCGACGCTCTTCGAGAATCGCTAGCCTACCCGCCACGGTAAACTACACCGAAGAAATCCTCAGTCGAACACGTCCCAGACACTCTGGAGGCATGGGGCCATCGCTTACTCATGTCGACACGGATGTNGTGTCTGACTTGACGGTCCGGTGTCTTCGTTGGGTTNAATCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3854#0 -TATCTGAGTTGGAACGGAGACGACTGGCCAACATTGCCAGAAACAATGAGTATTTACAA 59 consensus_3854#1 TTATCTGAGTTGGAACGGAGACGACTGGCCAACATTGCCAGAAACAATGAGTATTTACAA 60 *********************************************************** consensus_3854#0 GAATTGGGACTCAGTGCAAANTCAGCTCGNCAGACAAANCGTCCACCTACCGGTAANGTT 119 consensus_3854#1 GAATTGGGACTCAGTGCAAAATCAGCTCGACAGACAAAACGTCCACCTACCGGTAAAGTT 120 ******************** ******** ******** ***************** *** consensus_3854#0 ATCCAGNCCATGCGTATACAAAATNGGANGGTGGNGGACGNGATAGGCNNTCGNCGCTCT 179 consensus_3854#1 ATCCAGACCATGCGTATACAAAATTGGAAGGTGGAGGACGAGATAGGCGCTCGACGCTCT 180 ****** ***************** *** ***** ***** ******* *** ****** consensus_3854#0 TCGAGAATCGCTAGCCTANCCGCCACGNTAAACTACANCGNNGAAATCCTCAGTCGNACA 239 consensus_3854#1 TCGAGAATCGCTAGCCTACCCGCCACGGTAAACTACACCGAAGAAATCCTCAGTCGAACA 240 ****************** ******** ********* ** ************** *** consensus_3854#0 CGTCCCAGNCACTCTGGAGGCATNGGGCCATCGCTTACTCATGTCGNCACGGATGTTGTG 299 consensus_3854#1 CGTCCCAGACACTCTGGAGGCATGGGGCCATCGCTTACTCATGTCGACACGGATGTNGTG 300 ******** ************** ********************** ********* *** consensus_3854#0 TCTGACTTNACGGTC-GGTGTCTTCGTTGGTTTGAATCCGGGTAGTAAAGGTG 351 consensus_3854#1 TCTGACTTGACGGTCCGGTGTCTTCGTTGGGTTNAATCCCG------------ 341 ******** ****** ************** ** ***** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||