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Oryza sativa
cluster # 3866 cluster # 3866       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3866#0 length = 1244 sequences # 1  
consensus_3866#1 length = 221 sequences # 1  

consensusID : consensus_3866#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1244
fasta sequence
                              [CTGCGCCTCCTCCCCCCTCCATCCATCGCCGCCGCTTCCGCTGCGCTCTCCTTCATCGCCATCGTTGTTCGCCCTACGCCCGGCGGCGAGGAGAGGACGGGAGGAGACGGTCACCGAGAGCGTGTGTGGGTCACCTCGTGCCCTAGCGGGGCGCCCCATCGTGGTGGTGGTGGTGGTGGAGGATCCCGCGCCGGCATGGAGGGAGGGGACAGCGTCCTGGACGCGGTGCTCGACGAGGAAGCCCTAGACTACGACGGCGATGACGTCGAGATGGCGGACGCGGACGACGCCGTAGAGGAGGCGCAGGCGCAGGAGGATCCTGTAGCCATCACCGCCCCCACTGCCGCCGCCACCGGAGGAGGAGGAGGAGGAGGAGAAGGCGATGGCGGCGTGGGGCAGGCGGGGAAGAACAAGAACAAGAAGAAGAAGAAGAGGAAGAAATCCGCGAGGACGAAGAACAAGGGGAAGCCCGACGGGCCGCCCAAGATCGCCGACATTAACAGATTTGTTAATGAAACTTGCAAGCGCTTGAAGGAGAAGAAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCTTGTTAGAGAGGTTGAGGCCATCCAGAAGTGTGGAGGCCAGATTGTTGCTGATGGAAGTCGCTTCCGCACCGGTGGTGGAATCCTGTGGAACATCTTGAAGTCACGGGAGCCAAAGGCATATAAGGAAATTATGGCGAAGGGAAGGGAGCTTGAGAAGCAATTCAGGTACAAACAAGGCAGGCCGCAAACAAGCAGAAATGAAGATGCAAGCTCACAGGGAAGTGCGCTAATTGACGAGGATATTGAACCACATGGTGAAAAGGAAGTATCGGATGATCCTGAGCGGTTAATTGACGCGGAGAAGTCACCACATGTACCTGATAATAACAAAGCTGAACGCAAACCATTAGCAGACAGGATTCGTGTTCTTGTTGCTTATGATGATCTATTTGAAGAGGGAGAGATACACGAAGGGGATGCGCCATGAAGTATTTCGAAAGTCTTGCCCTTTCAACCCCTCTTGAGCGTTAATTCTTGAAGCAAACATCACCGAATGGGAAAAAGGGCATGTGTATTAATCGACATTACAGTGAGGCAATTCTTTTTCCAATTTTGCCTTTATATGTGCCTGATTGGGCAGTAAGGCAGCGGATGAGTTTTTTGTTGAGAGCAGTGAGCTGAAACAAACTCAATATTAATGGAAAG]

[+] EMBL AK102611             [CTGCGCCTCCTCCCCCCTCCATCCATCGCCGCCGCTTCCGCTGCGCTCTCCTTCATCGCCATCGTTGTTCGCCCTACGCCCGGCGGCGAGGAGAGGACGGGAGGAGACGGTCACCGAGAGCGTGTGTGGGTCACCTCGTGCCCTAGCGGGGCGCCCCATCGTGGTGGTGGTGGTGGTGGAGGATCCCGCGCCGGCATGGAGGGAGGGGACAGCGTCCTGGACGCGGTGCTCGACGAGGAAGCCCTAGACTACGACGGCGATGACGTCGAGATGGCGGACGCGGACGACGCCGTAGAGGAGGCGCAGGCGCAGGAGGATCCTGTAGCCATCACCGCCCCCACTGCCGCCGCCACCGGAGGAGGAGGAGGAGGAGGAGAAGGCGATGGCGGCGTGGGGCAGGCGGGGAAGAACAAGAACAAGAAGAAGAAGAAGAGGAAGAAATCCGCGAGGACGAAGAACAAGGGGAAGCCCGACGGGCCGCCCAAGATCGCCGACATTAACAGATTTGTTAATGAAACTTGCAAGCGCTTGAAGGAGAAGAAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCTTGTTAGAGAGGTTGAGGCCATCCAGAAGTGTGGAGGCCAGATTGTTGCTGATGGAAGTCGCTTCCGCACCGGTGGTGGAATCCTGTGGAACATCTTGAAGTCACGGGAGCCAAAGGCATATAAGGAAATTATGGCGAAGGGAAGGGAGCTTGAGAAGCAATTCAGGTACAAACAAGGCAGGCCGCAAACAAGCAGAAATGAAGATGCAAGCTCACAGGGAAGTGCGCTAATTGACGAGGATATTGAACCACATGGTGAAAAGGAAGTATCGGATGATCCTGAGCGGTTAATTGACGCGGAGAAGTCACCACATGTACCTGATAATAACAAAGCTGAACGCAAACCATTAGCAGACAGGATTCGTGTTCTTGTTGCTTATGATGATCTATTTGAAGAGGGAGAGATACACGAAGGGGATGCGCCATGAAGTATTTCGAAAGTCTTGCCCTTTCAACCCCTCTTGAGCGTTAATTCTTGAAGCAAACATCACCGAATGGGAAAAAGGGCATGTGTATTAATCGACATTACAGTGAGGCAATTCTTTTTCCAATTTTGCCTTTATATGTGCCTGATTGGGCAGTAAGGCAGCGGATGAGTTTTTTGTTGAGAGCAGTGAGCTGAAACAAACTCAATATTAATGGAAAG]


>consensus_3866#0 CTGCGCCTCCTCCCCCCTCCATCCATCGCCGCCGCTTCCGCTGCGCTCTCCTTCATCGCC ATCGTTGTTCGCCCTACGCCCGGCGGCGAGGAGAGGACGGGAGGAGACGGTCACCGAGAG CGTGTGTGGGTCACCTCGTGCCCTAGCGGGGCGCCCCATCGTGGTGGTGGTGGTGGTGGA GGATCCCGCGCCGGCATGGAGGGAGGGGACAGCGTCCTGGACGCGGTGCTCGACGAGGAA GCCCTAGACTACGACGGCGATGACGTCGAGATGGCGGACGCGGACGACGCCGTAGAGGAG GCGCAGGCGCAGGAGGATCCTGTAGCCATCACCGCCCCCACTGCCGCCGCCACCGGAGGA GGAGGAGGAGGAGGAGAAGGCGATGGCGGCGTGGGGCAGGCGGGGAAGAACAAGAACAAG AAGAAGAAGAAGAGGAAGAAATCCGCGAGGACGAAGAACAAGGGGAAGCCCGACGGGCCG CCCAAGATCGCCGACATTAACAGATTTGTTAATGAAACTTGCAAGCGCTTGAAGGAGAAG AAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCTT GTTAGAGAGGTTGAGGCCATCCAGAAGTGTGGAGGCCAGATTGTTGCTGATGGAAGTCGC TTCCGCACCGGTGGTGGAATCCTGTGGAACATCTTGAAGTCACGGGAGCCAAAGGCATAT AAGGAAATTATGGCGAAGGGAAGGGAGCTTGAGAAGCAATTCAGGTACAAACAAGGCAGG CCGCAAACAAGCAGAAATGAAGATGCAAGCTCACAGGGAAGTGCGCTAATTGACGAGGAT ATTGAACCACATGGTGAAAAGGAAGTATCGGATGATCCTGAGCGGTTAATTGACGCGGAG AAGTCACCACATGTACCTGATAATAACAAAGCTGAACGCAAACCATTAGCAGACAGGATT CGTGTTCTTGTTGCTTATGATGATCTATTTGAAGAGGGAGAGATACACGAAGGGGATGCG CCATGAAGTATTTCGAAAGTCTTGCCCTTTCAACCCCTCTTGAGCGTTAATTCTTGAAGC AAACATCACCGAATGGGAAAAAGGGCATGTGTATTAATCGACATTACAGTGAGGCAATTC TTTTTCCAATTTTGCCTTTATATGTGCCTGATTGGGCAGTAAGGCAGCGGATGAGTTTTT TGTTGAGAGCAGTGAGCTGAAACAAACTCAATATTAATGGAAAG



consensusID : consensus_3866#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 221
fasta sequence
                              [GGACGNAGNACAAGGGGAAGCCCGNCGGCCTGNCCAAGATCGCCGTCATTAACAGATTTGTTAATGNAACTTTGCAAGCGCTTNAAGGAGAAGNAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCTTGTTAGAGAGTTACATGGATTAGTTTGTTAAGTGTACTTGAGAAGTTTGGCGTTTCTCAGAAGAGTCTG]

[+] EMBL OSS0880A             [GGACGNAGNACAAGGGGAAGCCCGNCGGCCTGNCCAAGATCGCCGTCATTAACAGATTTGTTAATGNAACTTTGCAAGCGCTTNAAGGAGAAGNAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCTTGTTAGAGAGTTACATGGATTAGTTTGTTAAGTGTACTTGAGAAGTTTGGCGTTTCTCAGAAGAGTCTG]


>consensus_3866#1 GGACGNAGNACAAGGGGAAGCCCGNCGGCCTGNCCAAGATCGCCGTCATTAACAGATTTG TTAATGNAACTTTGCAAGCGCTTNAAGGAGAAGNAGTCCTATCTTGTTTGGAATGCTGTT GGCTGCCTTGGTGTTTCTGCTATCAGTGATCTTGTTAGAGAGTTACATGGATTAGTTTGT TAAGTGTACTTGAGAAGTTTGGCGTTTCTCAGAAGAGTCTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3866#0      CTGCGCCTCCTCCCCCCTCCATCCATCGCCGCCGCTTCCGCTGCGCTCTCCTTCATCGCC 60
consensus_3866#1      ------------------------------------------------------------
                                                                                  

consensus_3866#0      ATCGTTGTTCGCCCTACGCCCGGCGGCGAGGAGAGGACGGGAGGAGACGGTCACCGAGAG 120
consensus_3866#1      ------------------------------------------------------------
                                                                                  

consensus_3866#0      CGTGTGTGGGTCACCTCGTGCCCTAGCGGGGCGCCCCATCGTGGTGGTGGTGGTGGTGGA 180
consensus_3866#1      ------------------------------------------------------------
                                                                                  

consensus_3866#0      GGATCCCGCGCCGGCATGGAGGGAGGGGACAGCGTCCTGGACGCGGTGCTCGACGAGGAA 240
consensus_3866#1      ------------------------------------------------------------
                                                                                  

consensus_3866#0      GCCCTAGACTACGACGGCGATGACGTCGAGATGGCGGACGCGGACGACGCCGTAGAGGAG 300
consensus_3866#1      ------------------------------------------------------------
                                                                                  

consensus_3866#0      GCGCAGGCGCAGGAGGATCCTGTAGCCATCACCGCCCCCACTGCCGCCGCCACCGGAGGA 360
consensus_3866#1      ------------------------------------------------------------
                                                                                  

consensus_3866#0      GGAGGAGGAGGAGGAGAAGGCGATGGCGGCGTGGGGCAGGCGGGGAAGAACAAGAACAAG 420
consensus_3866#1      ------------------------------------------------------------
                                                                                  

consensus_3866#0      AAGAAGAAGAAGAGGAAGAAATCCGCGAGGACGAAGAACAAGGGGAAGCCCGACGGGCCG 480
consensus_3866#1      ----------------------------GGACGNAGNACAAGGGGAAGCCCGNCGGCCTG 32
                                                  ***** ** *************** *** * *

consensus_3866#0      CCCAAGATCGCCGACATTAACAGATTTGTTAATGAAACTT-GCAAGCGCTTGAAGGAGAA 539
consensus_3866#1      NCCAAGATCGCCGTCATTAACAGATTTGTTAATGNAACTTTGCAAGCGCTTNAAGGAGAA 92
                       ************ ******************** ***** ********** ********

consensus_3866#0      GAAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCT 599
consensus_3866#1      GNAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCT 152
                      * **********************************************************

consensus_3866#0      TGTTAGAGAGGTTGAGGCCATCCAGAAGTGTGGAGGCCAGATTGTTGCTGATGGAAGTCG 659
consensus_3866#1      TGTTAGAGAGTTA-----CATGGATTAGTTTG-----TTAAGTGTACTTGA--GAAG--- 197
                      ********** *      ***  *  *** **        * ***   ***  ****   

consensus_3866#0      CTTCCGCACCGGTGGTGGAATCCTGTGGAACATCTTGAAGTCACGGGAGCCAAAGGCATA 719
consensus_3866#1      -TTTGGCGTTTCTCAGAAGAGTCTG----------------------------------- 221
                       **  **     *      *  ***                                   

consensus_3866#0      TAAGGAAATTATGGCGAAGGGAAGGGAGCTTGAGAAGCAATTCAGGTACAAACAAGGCAG 779
consensus_3866#1      ------------------------------------------------------------
                                                                                  

consensus_3866#0      GCCGCAAACAAGCAGAAATGAAGATGCAAGCTCACAGGGAAGTGCGCTAATTGACGAGGA 839
consensus_3866#1      ------------------------------------------------------------
                                                                                  

consensus_3866#0      TATTGAACCACATGGTGAAAAGGAAGTATCGGATGATCCTGAGCGGTTAATTGACGCGGA 899
consensus_3866#1      ------------------------------------------------------------
                                                                                  

consensus_3866#0      GAAGTCACCACATGTACCTGATAATAACAAAGCTGAACGCAAACCATTAGCAGACAGGAT 959
consensus_3866#1      ------------------------------------------------------------
                                                                                  

consensus_3866#0      TCGTGTTCTTGTTGCTTATGATGATCTATTTGAAGAGGGAGAGATACACGAAGGGGATGC 1019
consensus_3866#1      ------------------------------------------------------------
                                                                                  

consensus_3866#0      GCCATGAAGTATTTCGAAAGTCTTGCCCTTTCAACCCCTCTTGAGCGTTAATTCTTGAAG 1079
consensus_3866#1      ------------------------------------------------------------
                                                                                  

consensus_3866#0      CAAACATCACCGAATGGGAAAAAGGGCATGTGTATTAATCGACATTACAGTGAGGCAATT 1139
consensus_3866#1      ------------------------------------------------------------
                                                                                  

consensus_3866#0      CTTTTTCCAATTTTGCCTTTATATGTGCCTGATTGGGCAGTAAGGCAGCGGATGAGTTTT 1199
consensus_3866#1      ------------------------------------------------------------
                                                                                  

consensus_3866#0      TTGTTGAGAGCAGTGAGCTGAAACAAACTCAATATTAATGGAAAG 1244
consensus_3866#1      ---------------------------------------------
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)