These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3866#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1244 fasta sequence [CTGCGCCTCCTCCCCCCTCCATCCATCGCCGCCGCTTCCGCTGCGCTCTCCTTCATCGCCATCGTTGTTCGCCCTACGCCCGGCGGCGAGGAGAGGACGGGAGGAGACGGTCACCGAGAGCGTGTGTGGGTCACCTCGTGCCCTAGCGGGGCGCCCCATCGTGGTGGTGGTGGTGGTGGAGGATCCCGCGCCGGCATGGAGGGAGGGGACAGCGTCCTGGACGCGGTGCTCGACGAGGAAGCCCTAGACTACGACGGCGATGACGTCGAGATGGCGGACGCGGACGACGCCGTAGAGGAGGCGCAGGCGCAGGAGGATCCTGTAGCCATCACCGCCCCCACTGCCGCCGCCACCGGAGGAGGAGGAGGAGGAGGAGAAGGCGATGGCGGCGTGGGGCAGGCGGGGAAGAACAAGAACAAGAAGAAGAAGAAGAGGAAGAAATCCGCGAGGACGAAGAACAAGGGGAAGCCCGACGGGCCGCCCAAGATCGCCGACATTAACAGATTTGTTAATGAAACTTGCAAGCGCTTGAAGGAGAAGAAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCTTGTTAGAGAGGTTGAGGCCATCCAGAAGTGTGGAGGCCAGATTGTTGCTGATGGAAGTCGCTTCCGCACCGGTGGTGGAATCCTGTGGAACATCTTGAAGTCACGGGAGCCAAAGGCATATAAGGAAATTATGGCGAAGGGAAGGGAGCTTGAGAAGCAATTCAGGTACAAACAAGGCAGGCCGCAAACAAGCAGAAATGAAGATGCAAGCTCACAGGGAAGTGCGCTAATTGACGAGGATATTGAACCACATGGTGAAAAGGAAGTATCGGATGATCCTGAGCGGTTAATTGACGCGGAGAAGTCACCACATGTACCTGATAATAACAAAGCTGAACGCAAACCATTAGCAGACAGGATTCGTGTTCTTGTTGCTTATGATGATCTATTTGAAGAGGGAGAGATACACGAAGGGGATGCGCCATGAAGTATTTCGAAAGTCTTGCCCTTTCAACCCCTCTTGAGCGTTAATTCTTGAAGCAAACATCACCGAATGGGAAAAAGGGCATGTGTATTAATCGACATTACAGTGAGGCAATTCTTTTTCCAATTTTGCCTTTATATGTGCCTGATTGGGCAGTAAGGCAGCGGATGAGTTTTTTGTTGAGAGCAGTGAGCTGAAACAAACTCAATATTAATGGAAAG] [+] EMBL AK102611 [CTGCGCCTCCTCCCCCCTCCATCCATCGCCGCCGCTTCCGCTGCGCTCTCCTTCATCGCCATCGTTGTTCGCCCTACGCCCGGCGGCGAGGAGAGGACGGGAGGAGACGGTCACCGAGAGCGTGTGTGGGTCACCTCGTGCCCTAGCGGGGCGCCCCATCGTGGTGGTGGTGGTGGTGGAGGATCCCGCGCCGGCATGGAGGGAGGGGACAGCGTCCTGGACGCGGTGCTCGACGAGGAAGCCCTAGACTACGACGGCGATGACGTCGAGATGGCGGACGCGGACGACGCCGTAGAGGAGGCGCAGGCGCAGGAGGATCCTGTAGCCATCACCGCCCCCACTGCCGCCGCCACCGGAGGAGGAGGAGGAGGAGGAGAAGGCGATGGCGGCGTGGGGCAGGCGGGGAAGAACAAGAACAAGAAGAAGAAGAAGAGGAAGAAATCCGCGAGGACGAAGAACAAGGGGAAGCCCGACGGGCCGCCCAAGATCGCCGACATTAACAGATTTGTTAATGAAACTTGCAAGCGCTTGAAGGAGAAGAAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCTTGTTAGAGAGGTTGAGGCCATCCAGAAGTGTGGAGGCCAGATTGTTGCTGATGGAAGTCGCTTCCGCACCGGTGGTGGAATCCTGTGGAACATCTTGAAGTCACGGGAGCCAAAGGCATATAAGGAAATTATGGCGAAGGGAAGGGAGCTTGAGAAGCAATTCAGGTACAAACAAGGCAGGCCGCAAACAAGCAGAAATGAAGATGCAAGCTCACAGGGAAGTGCGCTAATTGACGAGGATATTGAACCACATGGTGAAAAGGAAGTATCGGATGATCCTGAGCGGTTAATTGACGCGGAGAAGTCACCACATGTACCTGATAATAACAAAGCTGAACGCAAACCATTAGCAGACAGGATTCGTGTTCTTGTTGCTTATGATGATCTATTTGAAGAGGGAGAGATACACGAAGGGGATGCGCCATGAAGTATTTCGAAAGTCTTGCCCTTTCAACCCCTCTTGAGCGTTAATTCTTGAAGCAAACATCACCGAATGGGAAAAAGGGCATGTGTATTAATCGACATTACAGTGAGGCAATTCTTTTTCCAATTTTGCCTTTATATGTGCCTGATTGGGCAGTAAGGCAGCGGATGAGTTTTTTGTTGAGAGCAGTGAGCTGAAACAAACTCAATATTAATGGAAAG] consensusID : consensus_3866#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 221 fasta sequence [GGACGNAGNACAAGGGGAAGCCCGNCGGCCTGNCCAAGATCGCCGTCATTAACAGATTTGTTAATGNAACTTTGCAAGCGCTTNAAGGAGAAGNAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCTTGTTAGAGAGTTACATGGATTAGTTTGTTAAGTGTACTTGAGAAGTTTGGCGTTTCTCAGAAGAGTCTG] [+] EMBL OSS0880A [GGACGNAGNACAAGGGGAAGCCCGNCGGCCTGNCCAAGATCGCCGTCATTAACAGATTTGTTAATGNAACTTTGCAAGCGCTTNAAGGAGAAGNAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCTTGTTAGAGAGTTACATGGATTAGTTTGTTAAGTGTACTTGAGAAGTTTGGCGTTTCTCAGAAGAGTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3866#0 CTGCGCCTCCTCCCCCCTCCATCCATCGCCGCCGCTTCCGCTGCGCTCTCCTTCATCGCC 60 consensus_3866#1 ------------------------------------------------------------ consensus_3866#0 ATCGTTGTTCGCCCTACGCCCGGCGGCGAGGAGAGGACGGGAGGAGACGGTCACCGAGAG 120 consensus_3866#1 ------------------------------------------------------------ consensus_3866#0 CGTGTGTGGGTCACCTCGTGCCCTAGCGGGGCGCCCCATCGTGGTGGTGGTGGTGGTGGA 180 consensus_3866#1 ------------------------------------------------------------ consensus_3866#0 GGATCCCGCGCCGGCATGGAGGGAGGGGACAGCGTCCTGGACGCGGTGCTCGACGAGGAA 240 consensus_3866#1 ------------------------------------------------------------ consensus_3866#0 GCCCTAGACTACGACGGCGATGACGTCGAGATGGCGGACGCGGACGACGCCGTAGAGGAG 300 consensus_3866#1 ------------------------------------------------------------ consensus_3866#0 GCGCAGGCGCAGGAGGATCCTGTAGCCATCACCGCCCCCACTGCCGCCGCCACCGGAGGA 360 consensus_3866#1 ------------------------------------------------------------ consensus_3866#0 GGAGGAGGAGGAGGAGAAGGCGATGGCGGCGTGGGGCAGGCGGGGAAGAACAAGAACAAG 420 consensus_3866#1 ------------------------------------------------------------ consensus_3866#0 AAGAAGAAGAAGAGGAAGAAATCCGCGAGGACGAAGAACAAGGGGAAGCCCGACGGGCCG 480 consensus_3866#1 ----------------------------GGACGNAGNACAAGGGGAAGCCCGNCGGCCTG 32 ***** ** *************** *** * * consensus_3866#0 CCCAAGATCGCCGACATTAACAGATTTGTTAATGAAACTT-GCAAGCGCTTGAAGGAGAA 539 consensus_3866#1 NCCAAGATCGCCGTCATTAACAGATTTGTTAATGNAACTTTGCAAGCGCTTNAAGGAGAA 92 ************ ******************** ***** ********** ******** consensus_3866#0 GAAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCT 599 consensus_3866#1 GNAGTCCTATCTTGTTTGGAATGCTGTTGGCTGCCTTGGTGTTTCTGCTATCAGTGATCT 152 * ********************************************************** consensus_3866#0 TGTTAGAGAGGTTGAGGCCATCCAGAAGTGTGGAGGCCAGATTGTTGCTGATGGAAGTCG 659 consensus_3866#1 TGTTAGAGAGTTA-----CATGGATTAGTTTG-----TTAAGTGTACTTGA--GAAG--- 197 ********** * *** * *** ** * *** *** **** consensus_3866#0 CTTCCGCACCGGTGGTGGAATCCTGTGGAACATCTTGAAGTCACGGGAGCCAAAGGCATA 719 consensus_3866#1 -TTTGGCGTTTCTCAGAAGAGTCTG----------------------------------- 221 ** ** * * *** consensus_3866#0 TAAGGAAATTATGGCGAAGGGAAGGGAGCTTGAGAAGCAATTCAGGTACAAACAAGGCAG 779 consensus_3866#1 ------------------------------------------------------------ consensus_3866#0 GCCGCAAACAAGCAGAAATGAAGATGCAAGCTCACAGGGAAGTGCGCTAATTGACGAGGA 839 consensus_3866#1 ------------------------------------------------------------ consensus_3866#0 TATTGAACCACATGGTGAAAAGGAAGTATCGGATGATCCTGAGCGGTTAATTGACGCGGA 899 consensus_3866#1 ------------------------------------------------------------ consensus_3866#0 GAAGTCACCACATGTACCTGATAATAACAAAGCTGAACGCAAACCATTAGCAGACAGGAT 959 consensus_3866#1 ------------------------------------------------------------ consensus_3866#0 TCGTGTTCTTGTTGCTTATGATGATCTATTTGAAGAGGGAGAGATACACGAAGGGGATGC 1019 consensus_3866#1 ------------------------------------------------------------ consensus_3866#0 GCCATGAAGTATTTCGAAAGTCTTGCCCTTTCAACCCCTCTTGAGCGTTAATTCTTGAAG 1079 consensus_3866#1 ------------------------------------------------------------ consensus_3866#0 CAAACATCACCGAATGGGAAAAAGGGCATGTGTATTAATCGACATTACAGTGAGGCAATT 1139 consensus_3866#1 ------------------------------------------------------------ consensus_3866#0 CTTTTTCCAATTTTGCCTTTATATGTGCCTGATTGGGCAGTAAGGCAGCGGATGAGTTTT 1199 consensus_3866#1 ------------------------------------------------------------ consensus_3866#0 TTGTTGAGAGCAGTGAGCTGAAACAAACTCAATATTAATGGAAAG 1244 consensus_3866#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||