These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3875#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1273 fasta sequence [TTTTTCCGTCCAAAGTCCGAACCGTCCTTCCACTCGCCGCCTCCTTCCTTCTCTCTCACCGCCGCTCCCACCGCCGCCTGCTTCCCTCTCTCTCGCCGTCGCCTGCTTCCCTCTCTCTCGTCGCCGCCTGCTGCTTCCGCTCGCCTCCCTCTCTCTCCCGCCATCGCCACCGTCTCCCGCCGCCGCCCCCGAATCGAGCGCACGGGGCGGAGGCGGCAGTCGTCGTCGTCTGGTGGCCGGAGCGGCAGATCCGGGGCGGAGGCGACAGTTGTACTCGTCGTCGTCGTCGTCCGGTGGCCGGTCACCGCTCTCTCCCTCTCTCTCTCTCTCTCCCGTGGAAGGTGGCGGCGAAGACCCCGGAGGCGGCAGATCCGGCGCCACCGTGGCCGGATCTGGCCCTCCGGCGGATGGAGCAGCGTCGGCCCCGCCGCATGAAGACGGTGGCGGCGCCGGCGGTAGCTGCATCGACGATGGCGCCGCGCTGGCCGCCGCCACCTCCCTCCTCGCCCTCCCTTCTTCTCTCCGGCGGCGAGCGGCGCCTCCGCCTTGCCCTTGACGCATGGGTCGGTGACAGAGGGGAGAGGGGTGGAAGAGGAAATCAAAGATCGGGTGCGTCGCCTCAAGAACCTCTACCTACGCAGTGGGCTGCTTCGCCCAGTCCCCCTGCCAAAAGTGAGCGAGGGACGCGTTCCCCAGCTGAGGGACGCGTTCCATCGCGAGGGGGCGGTGCGGATGGAAAAGCTAACGGACGGAGCTAGGGGCACGGGTCAAAGGTACGCATTGGTGATGGCCTAATCTCGTTGTTGGATTCAAGCACATCGCAACCGATGTCGCCTCCTCTCGCTGGTTCTCGCGCTCCTCGTTGCCTCCGATGCAGGCGTTGCTGGCCCCCAACGCGCTGTCGTCCAACACCGCACCTCCACACCGTGCGACGTCCCCGGCACCGACCACACCTCCCTCGGCACCAACCACCCCTCCTACTCCTCGTCTTCTCTACCGTCGCGCAACAGCCTCCGACGCAGGCGCCGTCGGTGCCCATCACGCCGCCGTCCAACGCCCCGCCGCCAGCGCCCCCGGCACCGACCACGCCTCCCTTGGCACCACCGGTGCCGACCACCTGAGCACAGTGGTGGAGACACAGTCTGAGAGAATGAGCATCACGAGCTGGACTTAGCTTGTGAGGTTTTCGATCCTACCCTCCAAGAATGAACGGCGGGATTTAGATTGGTATAATATGCTGGACCGGAACAATGCTCTAATCCTAATCCTAATC] [+] EMBL AK106479 [TTTTTCCGTCCAAAGTCCGAACCGTCCTTCCACTCGCCGCCTCCTTCCTTCTCTCTCACCGCCGCTCCCACCGCCGCCTGCTTCCCTCTCTCTCGCCGTCGCCTGCTTCCCTCTCTCTCGTCGCCGCCTGCTGCTTCCGCTCGCCTCCCTCTCTCTCCCGCCATCGCCACCGTCTCCCGCCGCCGCCCCCGAATCGAGCGCACGGGGCGGAGGCGGCAGTCGTCGTCGTCTGGTGGCCGGAGCGGCAGATCCGGGGCGGAGGCGACAGTTGTACTCGTCGTCGTCGTCGTCCGGTGGCCGGTCACCGCTCTCTCCCTCTCTCTCTCTCTCTCCCGTGGAAGGTGGCGGCGAAGACCCCGGAGGCGGCAGATCCGGCGCCACCGTGGCCGGATCTGGCCCTCCGGCGGATGGAGCAGCGTCGGCCCCGCCGCATGAAGACGGTGGCGGCGCCGGCGGTAGCTGCATCGACGATGGCGCCGCGCTGGCCGCCGCCACCTCCCTCCTCGCCCTCCCTTCTTCTCTCCGGCGGCGAGCGGCGCCTCCGCCTTGCCCTTGACGCATGGGTCGGTGACAGAGGGGAGAGGGGTGGAAGAGGAAATCAAAGATCGGGTGCGTCGCCTCAAGAACCTCTACCTACGCAGTGGGCTGCTTCGCCCAGTCCCCCTGCCAAAAGTGAGCGAGGGACGCGTTCCCCAGCTGAGGGACGCGTTCCATCGCGAGGGGGCGGTGCGGATGGAAAAGCTAACGGACGGAGCTAGGGGCACGGGTCAAAGGTACGCATTGGTGATGGCCTAATCTCGTTGTTGGATTCAAGCACATCGCAACCGATGTCGCCTCCTCTCGCTGGTTCTCGCGCTCCTCGTTGCCTCCGATGCAGGCGTTGCTGGCCCCCAACGCGCTGTCGTCCAACACCGCACCTCCACACCGTGCGACGTCCCCGGCACCGACCACACCTCCCTCGGCACCAACCACCCCTCCTACTCCTCGTCTTCTCTACCGTCGCGCAACAGCCTCCGACGCAGGCGCCGTCGGTGCCCATCACGCCGCCGTCCAACGCCCCGCCGCCAGCGCCCCCGGCACCGACCACGCCTCCCTTGGCACCACCGGTGCCGACCACCTGAGCACAGTGGTGGAGACACAGTCTGAGAGAATGAGCATCACGAGCTGGACTTAGCTTGTGAGGTTTTCGATCCTACCCTCCAAGAATGAACGGCGGGATTTAGATTGGTATAATATGCTGGACCGGAACAATGCTCTAATCCTAATCCTAATC] consensusID : consensus_3875#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [CCGGCGGCGGCGGCGGGCAGTCGTCGTCGTTTGGTGGCCGGAGCAGCAGATCCGGGGCGGAGGCGACCAACGAGCGAGCGGCGCACGGAGCGGAGGCGGCAGTCGTCGTCCCTCTCTCTCTCTCTCCCGTGGAAGGTGGTGGCGGCGACCCCGGAGGCGGCAGATCTGGCGCCGCCGTGGCTGGATCTGGCCCCCCGGCAGATGGAGCGGCGCCGGCCACGCCGCATCGAGACGGTGACGGCGCCGACGGTGGCCACATCGACGATGGCGCCGTCATTCTTCACCGTGCTCGCCGACGCTGCCTCCCTCCTCGCCCTCCCTTCTTCTCTCCGACGGCGAGCGGCCGCATTGAGGAGACTGTGGCGACACCGGCGGTGGCCGCTTCGACATTGGTTGCAAC] [+] EMBL CB635320 [CCGGCGGCGGCGGCGGGCAGTCGTCGTCGTTTGGTGGCCGGAGCAGCAGATCCGGGGCGGAGGCGACCAACGAGCGAGCGGCGCACGGAGCGGAGGCGGCAGTCGTCGTCCCTCTCTCTCTCTCTCCCGTGGAAGGTGGTGGCGGCGACCCCGGAGGCGGCAGATCTGGCGCCGCCGTGGCTGGATCTGGCCCCCCGGCAGATGGAGCGGCGCCGGCCACGCCGCATCGAGACGGTGACGGCGCCGACGGTGGCCACATCGACGATGGCGCCGTCATTCTTCACCGTGCTCGCCGACGCTGCCTCCCTCCTCGCCCTCCCTTCTTCTCTCCGACGGCGAGCGGCCGCATTGAGGAGACTGTGGCGACACCGGCGGTGGCCGCTTCGACATTGGTTGCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3875#0 TTTTTCCGTCCAAAGTCCGAACCGTCCTTCCACTCGCCGCCTCCTTCCTTCTCTCTCACC 60 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 GCCGCTCCCACCGCCGCCTGCTTCCCTCTCTCTCGCCGTCGCCTGCTTCCCTCTCTCTCG 120 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 TCGCCGCCTGCTGCTTCCGCTCGCCTCCCTCTCTCTCCCGCCATCGCCACCGTCTCCCGC 180 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 CGCCGCCCCCGAATCGAGCGCACGGGGCGGAGGCGG-CAGTCGTCGTCGTCTGGTGGCCG 239 consensus_3875#1 --------------------CCGGCGGCGGCGGCGGGCAGTCGTCGTCGTTTGGTGGCCG 40 * * ***** ***** ************* ********* consensus_3875#0 GAGCGGCAGATCCGGGGCGGAGGCGACAGTTGTACTCGTCGTCGTCGTCGTCCGGTGGCC 299 consensus_3875#1 GAGCAGCAGATCCGGGGCGGAGGCGACCAACGAGCGAG-------CGGCGCACGGAGCGG 93 **** ********************** * * * ** ** *** * consensus_3875#0 GGTCACCGCTCTCTCCCTCTCTCTCTCTCTCTCCCGTGGAAGGTGGCGGCGAAGACCCCG 359 consensus_3875#1 AGGCGGCAGTCGTCGTCCCTCTCTCTCTCTCTCCCGTGGAAGGTGGTGGCGGCGACCCCG 153 * * * ** * **************************** **** ******* consensus_3875#0 GAGGCGGCAGATCCGGCGCCACCGTGGCCGGATCTGGCCCTCCGGCGGATGGAGCAGCGT 419 consensus_3875#1 GAGGCGGCAGATCTGGCGCCGCCGTGGCTGGATCTGGCCCCCCGGCAGATGGAGCGGCGC 213 ************* ****** ******* *********** ***** ******** *** consensus_3875#0 CGGCCCCGCCGCATGAAGACGGTGGCGGCGCCGGCGGTAGCTGCATCGACGATGGCGCCG 479 consensus_3875#1 CGGCCACGCCGCATCGAGACGGTGACGGCGCCGACGGTGGCCACATCGACGATGGCGCCG 273 ***** ******** ******** ******** **** ** ***************** consensus_3875#0 C-------------GCTGGCCGCCGCCACCTCCCTCCTCGCCCTCCCTTCTTCTCTCCGG 526 consensus_3875#1 TCATTCTTCACCGTGCTCGCCGACGCTGCCTCCCTCCTCGCCCTCCCTTCTTCTCTCCGA 333 *** **** *** ******************************* consensus_3875#0 CGGCGAGCGGCGCCTCCGCCTTGCCCTTGACGCATGGGTCGGTGACAGAGGGGAGAGGGG 586 consensus_3875#1 CGGCGAGCGGCCGCATTGAGGAGACTGTGGCGACACCGGCGGTGGCCGCTTCGACATTGG 393 *********** * * * * ** ** * ***** * * ** * ** consensus_3875#0 TGGAAGAGGAAATCAAAGATCGGGTGCGTCGCCTCAAGAACCTCTACCTACGCAGTGGGC 646 consensus_3875#1 TTGCAAC----------------------------------------------------- 400 * * * consensus_3875#0 TGCTTCGCCCAGTCCCCCTGCCAAAAGTGAGCGAGGGACGCGTTCCCCAGCTGAGGGACG 706 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 CGTTCCATCGCGAGGGGGCGGTGCGGATGGAAAAGCTAACGGACGGAGCTAGGGGCACGG 766 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 GTCAAAGGTACGCATTGGTGATGGCCTAATCTCGTTGTTGGATTCAAGCACATCGCAACC 826 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 GATGTCGCCTCCTCTCGCTGGTTCTCGCGCTCCTCGTTGCCTCCGATGCAGGCGTTGCTG 886 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 GCCCCCAACGCGCTGTCGTCCAACACCGCACCTCCACACCGTGCGACGTCCCCGGCACCG 946 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 ACCACACCTCCCTCGGCACCAACCACCCCTCCTACTCCTCGTCTTCTCTACCGTCGCGCA 1006 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 ACAGCCTCCGACGCAGGCGCCGTCGGTGCCCATCACGCCGCCGTCCAACGCCCCGCCGCC 1066 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 AGCGCCCCCGGCACCGACCACGCCTCCCTTGGCACCACCGGTGCCGACCACCTGAGCACA 1126 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 GTGGTGGAGACACAGTCTGAGAGAATGAGCATCACGAGCTGGACTTAGCTTGTGAGGTTT 1186 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 TCGATCCTACCCTCCAAGAATGAACGGCGGGATTTAGATTGGTATAATATGCTGGACCGG 1246 consensus_3875#1 ------------------------------------------------------------ consensus_3875#0 AACAATGCTCTAATCCTAATCCTAATC 1273 consensus_3875#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||