cluster # 388

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Oryza sativa
cluster # 388 cluster # 388 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_388#0 length = 707 sequences # 1

consensus_388#1 length = 290 sequences # 1

consensusID : consensus_388#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 707
fasta sequence

                              [TCTCTTTTTTTGCACACATGGAGATAAGCATGTCTTTTTTTTTTCCCTAAGGAAATGTACAAACATGTCTTGTGGACAGAAAAGCAGGCTTTGCAAACATCTTCTCTAGGGTGAGAATATACTTATATATGATGAAGCTATGAGCTATATGAACAATAGGTACTAGAAATAAAATAAACCGTGAACACCGCAAAATTGGACTTTACCCAGTTCCTCAGGATCAGAGAACCTCTAAGCTGTACTATACTATCATCAAGAATTTTGCCCTATGGGCATATATGTATATCTGAACTCCAGCAGCAGCTGCAGCGGTTGCTGTACTTCACGAACCACAGCAAATGTCTGTCTTCCCGGGGATGTTATCTTTCACGCCAAACTTTGGGGCCAAGGGCCAAATGCTCAGACCACATGTTGTTTGTTTTTGAGACGAAGATTTACATACCAAGTTGCAAGGCAGCGCAATACCAATCCCACTAGTATCTTGAATACCGCGAGCATGAAGTATGTCAGGACTGACCAAAGCAGGATCCAAAATACTCTCCACATAAATGGGCCAACAGGAAGGAGGGTGGCATATACTGGAGTCAATACACGAATCACCACACACGCATGGGCAAGGGGGATGAATGTTAGGTCCTTCTGACGGTCATCAGTTTTGTCATTCAAAATCTGACTGCATAGGTCTTCCAAAAACTCTGAATAAGCAA]

[+] EMBL CB648937             [TCTCTTTTTTTGCACACATGGAGATAAGCATGTCTTTTTTTTTTCCCTAAGGAAATGTACAAACATGTCTTGTGGACAGAAAAGCAGGCTTTGCAAACATCTTCTCTAGGGTGAGAATATACTTATATATGATGAAGCTATGAGCTATATGAACAATAGGTACTAGAAATAAAATAAACCGTGAACACCGCAAAATTGGACTTTACCCAGTTCCTCAGGATCAGAGAACCTCTAAGCTGTACTATACTATCATCAAGAATTTTGCCCTATGGGCATATATGTATATCTGAACTCCAGCAGCAGCTGCAGCGGTTGCTGTACTTCACGAACCACAGCAAATGTCTGTCTTCCCGGGGATGTTATCTTTCACGCCAAACTTTGGGGCCAAGGGCCAAATGCTCAGACCACATGTTGTTTGTTTTTGAGACGAAGATTTACATACCAAGTTGCAAGGCAGCGCAATACCAATCCCACTAGTATCTTGAATACCGCGAGCATGAAGTATGTCAGGACTGACCAAAGCAGGATCCAAAATACTCTCCACATAAATGGGCCAACAGGAAGGAGGGTGGCATATACTGGAGTCAATACACGAATCACCACACACGCATGGGCAAGGGGGATGAATGTTAGGTCCTTCTGACGGTCATCAGTTTTGTCATTCAAAATCTGACTGCATAGGTCTTCCAAAAACTCTGAATAAGCAA]




>consensus_388#0
TCTCTTTTTTTGCACACATGGAGATAAGCATGTCTTTTTTTTTTCCCTAAGGAAATGTAC
AAACATGTCTTGTGGACAGAAAAGCAGGCTTTGCAAACATCTTCTCTAGGGTGAGAATAT
ACTTATATATGATGAAGCTATGAGCTATATGAACAATAGGTACTAGAAATAAAATAAACC
GTGAACACCGCAAAATTGGACTTTACCCAGTTCCTCAGGATCAGAGAACCTCTAAGCTGT
ACTATACTATCATCAAGAATTTTGCCCTATGGGCATATATGTATATCTGAACTCCAGCAG
CAGCTGCAGCGGTTGCTGTACTTCACGAACCACAGCAAATGTCTGTCTTCCCGGGGATGT
TATCTTTCACGCCAAACTTTGGGGCCAAGGGCCAAATGCTCAGACCACATGTTGTTTGTT
TTTGAGACGAAGATTTACATACCAAGTTGCAAGGCAGCGCAATACCAATCCCACTAGTAT
CTTGAATACCGCGAGCATGAAGTATGTCAGGACTGACCAAAGCAGGATCCAAAATACTCT
CCACATAAATGGGCCAACAGGAAGGAGGGTGGCATATACTGGAGTCAATACACGAATCAC
CACACACGCATGGGCAAGGGGGATGAATGTTAGGTCCTTCTGACGGTCATCAGTTTTGTC
ATTCAAAATCTGACTGCATAGGTCTTCCAAAAACTCTGAATAAGCAA

consensusID : consensus_388#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATAAACCGTGAACACCGCAAAATTGGACTTTACCCAGTTCCTCAGGATCAGAGAACCTCTAAGCTGTACTATACTATCATCAAGAATTTTGCCATATGGGCATATATGTATATCTGAACTCAAGCAGCAGCTGCAGCGGTTGCTGTACTTCACGAACCACAGCAAATGTCTGTCTTCCCGGGGATGTTATCTTTCACACCAAACTTTGGTGCCAAGTGCAAAATGCTCAGTCCATTTCTACTC]

[-] EMBL CF321917             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATAAACCGTGAACACCGCAAAATTGGACTTTACCCAGTTCCTCAGGATCAGAGAACCTCTAAGCTGTACTATACTATCATCAAGAATTTTGCCATATGGGCATATATGTATATCTGAACTCAAGCAGCAGCTGCAGCGGTTGCTGTACTTCACGAACCACAGCAAATGTCTGTCTTCCCGGGGATGTTATCTTTCACACCAAACTTTGGTGCCAAGTGCAAAATGCTCAGTCCATTTCTACTC]




>consensus_388#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATAAACCGTGAAC
ACCGCAAAATTGGACTTTACCCAGTTCCTCAGGATCAGAGAACCTCTAAGCTGTACTATA
CTATCATCAAGAATTTTGCCATATGGGCATATATGTATATCTGAACTCAAGCAGCAGCTG
CAGCGGTTGCTGTACTTCACGAACCACAGCAAATGTCTGTCTTCCCGGGGATGTTATCTT
TCACACCAAACTTTGGTGCCAAGTGCAAAATGCTCAGTCCATTTCTACTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_388#0      TCTCTTTTTTTGCACACATGGAGATAAGCATGTCTTTTTTTTTTCCCTAAGGAAATGTAC 60
consensus_388#1      ------------------------------------------------------------
                                                                                 

consensus_388#0      AAACATGTCTTGTGGACAGAAAAGCAGGCTTTGCAAACATCTTCTCTAGGGTGAGAATAT 120
consensus_388#1      ------------------------------------------------------------
                                                                                 

consensus_388#0      ACTTATATATGATGAAGCTATGAGCTATATGAACAATAGGTACTAGAAATAAAATAAACC 180
consensus_388#1      -TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-----TAAAATAAACC 54
                       ** * * *  *     * *    * * *      *   *  *     ***********

consensus_388#0      GTGAACACCGCAAAATTGGACTTTACCCAGTTCCTCAGGATCAGAGAACCTCTAAGCTGT 240
consensus_388#1      GTGAACACCGCAAAATTGGACTTTACCCAGTTCCTCAGGATCAGAGAACCTCTAAGCTGT 114
                     ************************************************************

consensus_388#0      ACTATACTATCATCAAGAATTTTGCCCTATGGGCATATATGTATATCTGAACTCCAGCAG 300
consensus_388#1      ACTATACTATCATCAAGAATTTTGCCATATGGGCATATATGTATATCTGAACTCAAGCAG 174
                     ************************** *************************** *****

consensus_388#0      CAGCTGCAGCGGTTGCTGTACTTCACGAACCACAGCAAATGTCTGTCTTCCCGGGGATGT 360
consensus_388#1      CAGCTGCAGCGGTTGCTGTACTTCACGAACCACAGCAAATGTCTGTCTTCCCGGGGATGT 234
                     ************************************************************

consensus_388#0      TATCTTTCACGCCAAACTTTGGGGCCAAGGGCCAAATGCTCAGACCACATGTTGTTTGTT 420
consensus_388#1      TATCTTTCACACCAAACTTTGGTGCCAAGTGCAAAATGCTCAGTCCATTTCTACTC---- 290
                     ********** *********** ****** ** ********** ***  * *  *     

consensus_388#0      TTTGAGACGAAGATTTACATACCAAGTTGCAAGGCAGCGCAATACCAATCCCACTAGTAT 480
consensus_388#1      ------------------------------------------------------------
                                                                                 

consensus_388#0      CTTGAATACCGCGAGCATGAAGTATGTCAGGACTGACCAAAGCAGGATCCAAAATACTCT 540
consensus_388#1      ------------------------------------------------------------
                                                                                 

consensus_388#0      CCACATAAATGGGCCAACAGGAAGGAGGGTGGCATATACTGGAGTCAATACACGAATCAC 600
consensus_388#1      ------------------------------------------------------------
                                                                                 

consensus_388#0      CACACACGCATGGGCAAGGGGGATGAATGTTAGGTCCTTCTGACGGTCATCAGTTTTGTC 660
consensus_388#1      ------------------------------------------------------------
                                                                                 

consensus_388#0      ATTCAAAATCTGACTGCATAGGTCTTCCAAAAACTCTGAATAAGCAA 707
consensus_388#1      -----------------------------------------------