These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3888#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 872 fasta sequence [ACTTCCCTATACAAAATCCGATAGAGTACTTCTAATCTTCTATTTAGGTTGAAAAATAATTACAAGGATCCGTAGGTAACTTATAGAGTTTGTTTTCAATCCAGGTGTCAAGAGGGCATACCAAAGATCGTCGCTCCGGCGGCAATGGAGGAGCAGCTGAAGAGGCCTATGACGATGAAGAAGATCTCGGTGCAAAAGAAGTCGCCGTCGGGGAAGTTCCTGCACATCCTCCACGCCTCGCCGACGGGGAAGCTCTCGGTGACCAACTCGCCGGAGGCGCCGGCGGTGATGATGACCACACCGACGAAGCATGCCGCCGCCGCCGCGCAGTCGAAGCAGCTGCTGGGGAGCCCCCGGGTGGCCTCGCCGTCGTGCCTCTGCTCGCCGACGACGCACGCCGGCTCGTTCCGGTGCAGGCTCCACCGCGGCGGCGGCGGCGCCGCCGCCGCCGCCGCCGGGCTCGCCGGATCCATCGGCTGCGGCTGCGGCGAGATGGACAAGAAGCCCGGTGTATGACAAAGTCCCGTGCAGGTGCAATGCACGTCAAAAATTGCGCCATGTTTGCTGTTCTTCTTCAGAAATGGCCGGGCCTTTTTTCTCCCCCTCCCTTGCTTTTGTGATGCAGGGAAGGGAGAAGAGAATGATGATCTTAGAAGCTCTGCACCTCCATTTTTCTTGTAAATGCTACTCCTACTATTGAGACCTTGATCATTCAAGATTTCAGTCAGTTTGGCGGTGTTGTTTTCCCTATCACATTTCTCTGGATTGTGTGTTCTCCCTTCCACTGCTCCTCAAACAACCTCTTGATCGAAAAAAAAGATCTATGGCAATATATAATGACAGGTATCAAACGGCTGGTTTCATTCTAAAAA] [+] EMBL AK119328 [ACTTCCCTATACAAAATCCGATAGAGTACTTCTAATCTTCTATTTAGGTTGAAAAATAATTACAAGGATCCGTAGGTAACTTATAGAGTTTGTTTTCAATCCAGGTGTCAAGAGGGCATACCAAAGATCGTCGCTCCGGCGGCAATGGAGGAGCAGCTGAAGAGGCCTATGACGATGAAGAAGATCTCGGTGCAAAAGAAGTCGCCGTCGGGGAAGTTCCTGCACATCCTCCACGCCTCGCCGACGGGGAAGCTCTCGGTGACCAACTCGCCGGAGGCGCCGGCGGTGATGATGACCACACCGACGAAGCATGCCGCCGCCGCCGCGCAGTCGAAGCAGCTGCTGGGGAGCCCCCGGGTGGCCTCGCCGTCGTGCCTCTGCTCGCCGACGACGCACGCCGGCTCGTTCCGGTGCAGGCTCCACCGCGGCGGCGGCGGCGCCGCCGCCGCCGCCGCCGGGCTCGCCGGATCCATCGGCTGCGGCTGCGGCGAGATGGACAAGAAGCCCGGTGTATGACAAAGTCCCGTGCAGGTGCAATGCACGTCAAAAATTGCGCCATGTTTGCTGTTCTTCTTCAGAAATGGCCGGGCCTTTTTTCTCCCCCTCCCTTGCTTTTGTGATGCAGGGAAGGGAGAAGAGAATGATGATCTTAGAAGCTCTGCACCTCCATTTTTCTTGTAAATGCTACTCCTACTATTGAGACCTTGATCATTCAA ] [+] EMBL AU182503 [ CCGCCGCCGCCGCCGCCGGGCTCGCCGGATCCATCGGCTGCGGCTGCGGCGAGATGGACAAGAAGCCCGGTGTATGACAAAGTCCCGTGCAGGTGCAATGCACGTCAAAAATTGCGCCATGTTTGCTGTTCTTCTTCAGAAATGGCCGGGCCTTTTTTCTCTCCCTCCCTTGCTTTTGTGATGCAGGGAAGGGAGAAGAGAATGATGATCTTAGAAGCTCTGCACCTCCATTTTTCTTGTAAATGCTACTCCTACTATTGAGACCTTGATCATTCAAGATTTCAGTCAGTTTGGCGGTGTTGTTTTCCCTATCACATTTCTCTGGATTGTGTGTTCTCCCTTCCACTGCTCCTCAAACAACCTCTTGATCGAAAAAAAAGATCTATGGCAATATATAATGACAGGTATCAAACGGCTGGTTTCATTCTAAAAA] consensusID : consensus_3888#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [GTGACTAGTACTTCCCTATACAAAATCCGATAGAGTACTTCTAATCTTCTATTTAGGTTGAAAAATAATTACAAGGNTCCGTAGTAACTTATAGAGTTTGTTTTCAATCCAGGTGTCAAGAGGGCATACCAAAGATCGTCGCTCCGGCGGCGGCGCCCCNGNCGNCNCGGNGNCTTCGCCGGTTCCATCGGCTGCGGCTGCGGCGAGATGGACAAGAAGCCCGGTGTATGACAAAGTCCCGTGCAGGTGCAATGCACGTCAAAANTTGCGCCATGTTTGCTGTTCTTCTTCAGAAATGGCCGGGCCTTTTTNTTCTCCCTCCCTTGCTTTTGTTNATGCAGGGAAGGGAGAAGAGGAATGATGATCTTAGGAAGCTCTGCA] [+] EMBL C73193 [GTGACTAGTACTTCCCTATACAAAATCCGATAGAGTACTTCTAATCTTCTATTTAGGTTGAAAAATAATTACAAGGNTCCGTAGTAACTTATAGAGTTTGTTTTCAATCCAGGTGTCAAGAGGGCATACCAAAGATCGTCGCTCCGGCGGCGGCGCCCCNGNCGNCNCGGNGNCTTCGCCGGTTCCATCGGCTGCGGCTGCGGCGAGATGGACAAGAAGCCCGGTGTATGACAAAGTCCCGTGCAGGTGCAATGCACGTCAAAANTTGCGCCATGTTTGCTGTTCTTCTTCAGAAATGGCCGGGCCTTTTTNTTCTCCCTCCCTTGCTTTTGTTNATGCAGGGAAGGGAGAAGAGGAATGATGATCTTAGGAAGCTCTGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3888#0 ACTTCCCTATACAAAATCCGATAGAGTACTTCTAATCTTCTATTTAGGTTGAAAAATAAT 60 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 TACAAGGATCCGTAGGTAACTTATAGAGTTTGTTTTCAATCCAGGTGTCAAGAGGGCATA 120 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 CCAAAGATCGTCGCTCCGGCGGCAATGGAGGAGCAGCTGAAGAGGCCTATGACGATGAAG 180 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 AAGATCTCGGTGCAAAAGAAGTCGCCGTCGGGGAAGTTCCTGCACATCCTCCACGCCTCG 240 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 CCGACGGGGAAGCTCTCGGTGACCAACTCGCCGGAGGCGCCGGCGGTGATGATGACCACA 300 consensus_3888#1 -----------------------------------GTGACTAGTACTTCCCTATACAAAA 25 * * * * ** * * consensus_3888#0 -CCGACGAAGCATGCCGCCGCCGCCGCGCAGTCGAAGCAGCTGCTGGGGAGCCCCCGGGT 359 consensus_3888#1 TCCGATAGAGTACTTCTAATCTTCTATTTAGGTTGAAAAATAATTACAAGGNTCCGTAGT 85 **** ** * * * * ** * * * * ** ** consensus_3888#0 GGCCTCGCCGTCGTGCCTCTGCTCGCCGACGACGCACGCCGGCTCGTTCCGGTGCAGGCT 419 consensus_3888#1 AACTT----ATAGAGTTTGTTTTCAATCCAGGTGT-CAAGAGGGCATACC-----AAAGA 135 * * * * * * * ** * * * * * * ** * consensus_3888#0 CCACCGCGGCGGCGGCGGCGCCGCCGCCGCCGCCGCCGGGCTCGCCGGATCCATCGGCTG 479 consensus_3888#1 TCGTCGCTCCGGCGGCGGCGCCCCNGNCGNCNCGGN-GNCTTCGCCGGTTCCATCGGCTG 194 * *** ************* * * ** * * * * ******* *********** consensus_3888#0 CGGCTGCGGCGAGATGGACAAGAAGCCCGGTGTATGACAAAGTCCCGTGCAGGTGCAATG 539 consensus_3888#1 CGGCTGCGGCGAGATGGACAAGAAGCCCGGTGTATGACAAAGTCCCGTGCAGGTGCAATG 254 ************************************************************ consensus_3888#0 CACGTCAAAAATTGCGCCATGTTTGCTGTTCTTCTTCAGAAATGGCCGGGCCTTTTTTCT 599 consensus_3888#1 CACGTCAAAANTTGCGCCATGTTTGCTGTTCTTCTTCAGAAATGGCCGGGCCTTTTTNTT 314 ********** ********************************************** * consensus_3888#0 CCCCCTCCCTTGCTTTTGT-GATGCAGGGAAGGGAGAAGAG-AATGATGATCTTAG-AAG 656 consensus_3888#1 CTCCCTCCCTTGCTTTTGTTNATGCAGGGAAGGGAGAAGAGGAATGATGATCTTAGGAAG 374 * ***************** ******************** ************** *** consensus_3888#0 CTCTGCACCTCCATTTTTCTTGTAAATGCTACTCCTACTATTGAGACCTTGATCATTCAA 716 consensus_3888#1 CTCTGCA----------------------------------------------------- 381 ******* consensus_3888#0 GATTTCAGTCAGTTTGGCGGTGTTGTTTTCCCTATCACATTTCTCTGGATTGTGTGTTCT 776 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 CCCTTCCACTGCTCCTCAAACAACCTCTTGATCGAAAAAAAAGATCTATGGCAATATATA 836 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 ATGACAGGTATCAAACGGCTGGTTTCATTCTAAAAA 872 consensus_3888#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||