cluster # 3889

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Oryza sativa
cluster # 3889 cluster # 3889 Sequences # 3 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3889#0 length = 3023 sequences # 3
consensusID : consensus_3889#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 3023
fasta sequence
                              [CTCTCGCCTATCTTCTCCTATAATCTGAGCCTGGTCGCTCGTGGTTCACCGGGAACAGACGCGCTCGATCGCGCGCCTCGTCGGCAGTCGCCACCGGTGAGCACTCTACGCCGTCGAGCTAGCGCCCGTGGCTGCCTTCGCTCCAACAGCAACCCGACGAACGGCCCTCGCCGCGCGAAGCCCTTCAATTCTTCCGAAGAATCTATCAAATCAGTGAGATTAATCTACACAAATGCTTGCAGCTGAAGAACTGAAACTGATCATCCCGTTGTAGTTCCCCCCCTGAGACCCAACGGCGGCGTATGTCGATCTCCTCGTGCCGGACCTGAGCAACGTCGTCGGACAAACTCGATCTCCCCGCTCCGAACAACCACTCGCCTAAACTCTTCAAACCGGAAGAATTAATAGGAGAAAAACATGGAGAAGCCGAGTGAAATTGCCAAATCGATATTTCTATTTCTGAAATCAGACGAGGCCATGGTCATGCGGATCGAGTTCCTGGTGGTGGTCACGGCCGTATTGTTCCTCCTGATGTCTATCTTGGACATGTTCCGTCATCGGTCACGCCACAACCTCATCAAGTATTTTCTATTGATCCTAGACGGCATAAGCGATTCCACGTTGATCTACACAATTGGGCTGATGCAGAGTGTGCCTTCGCTGAAGAAAGACCTGTTCCCGGTGTGGGCGCTGATGCTGGTCAACCTCCGGAGCAGCGTCTGCTTCATCTCGGCGTACGGCATCCCTGACCAACAGAACCGCCGGTTTACAGAGGTAGCAAGGGTGATGGCACTTATAGGGGTGGCATTCTTGAACACAACGTTCAACAGCCGGTTCAAGCATCCTATCTGGGCACTTTGGGCGATGCAGGTAGTGAGATGTGGCTACCTCTTAAGGGTGTACAGGCTCGCCACAAGGTCCTACTTGCATGGCTGGAGCTCACCGCTTCTGACAGCATACATGGGCACCCCCGATGGCGTTGCTGCGAACGGTGATACAGCCACAATGCGAGGATACAAGTACTTGGTATCTGGAGATCAGAAGCAAACAGTTGAAGTGAAGCCTCCTGAGTACAAGTTCACTCTGTTTGTCCCAGAGCACAGAAGGAAAATGCTCGTCACACTTGACAAGGTTTGGCAGCAGGATGCAAGCGACACTAGTTCGACTGACATCCTAACACCACAGATGAAAGACATGTGCCTGTCTTTTGCATTATACCGCTTACTCCGTTGCAGATTTGATGACTTGAGCCTGCCAAGTGACAGTGTCGTCAACACCAGAAGATTAATCAGTAAAATCATCGGCAAAGGCAACGCGGATTTCGCTACACAAATAAGCAACTACAGCGAGAAGACCTTCAGGATTGTGAGATCAGAGCTCGCGTTCCTCAACGACTACTTCTACACAAGATACCCCGTCCTCTTCTGGCGTGGCTTCCCAATCTTTGCTTCCTGCCACCCTGTGCTAACAATTGCTTTCACTGTTTGGCTTGGAAAGGATCTCCATAAAATTTACAAGCCTAAGCAGGGGGGCGCCAATGTTGATATCATCATTACGTGGGGGTTCATGTTCATCATCGTGTTCAAGGAGCTTTGGAAGATGATCATCTACTTGCTGTCAGACTGGACCAAGGTGATGGTGCTGTGCGAGTACACTGCCGACAGCTTTAAGCATGCTCCACGATGGCTTTGCAAGGGCTTTCTCTGGCTTCTATGCACTCGAAGGTCCAAAATTGTCCACCATTGGCACAATAAGGTAAATCAGTATGAATTCCTTCAATCATTTAATTACAGGCCTTGCAAGTGGAACATTCTCTACTATGGAACCCTTGGATTGTTCGCAAGACGAAGAGATGGCGAGAAACCAGGCAAATCAATCGAGCTGCCAGAAGACGTGAAGTCAGCCATTTTGAGGTCTCTCTGCTCACAAAACCTTGAGCGAGATTCTTTGGAGCCAAATTTCCCAATATTGTTTTCGACATTTGGACTTCCATGCTCCCACATCATCCTCGTGTGGCATATAGCAACGACCCTATGCGAGATTGAGCTTTCTCAACGTTACAACGGATGCTTAACTGATTCTGAGCTGCAGCATGCAGTCAAGGCTGGTAAGAACTCCCAGCCATACGTTGTAAAGGAAGAAAGGCTGGAAGGTGCACTGCAAGCTAATTACATAGTCGCAAGTTGTATTTCAAGATACTGTGCCTATCTGCTTGTCTCAGAGCCAGATTTGCTACCTGATACCTACTTAAGTTCTGCGGAGGTATTTGAAAGCACCGTGAAAGAGGCTTCAGATGTTCTAAAGGGATCTGACAACCTGCAGAGCATATACAGAAAACTGATGTATCATGGGGATGTTGTGAATGTCGATAATATGAACAGACGTCACCCAAGTGTGATACTCGCGAGAAGTGCACAAGTTGCTAAGTCCTTGGTTGAAACTGAAGTCATGGATCGTTGGGAGATGTTGGCTGGGGTGTGGGCCGAAATGTTAGTACATATAGCTCCCTCTTGGAATGCAGCAGCTCACAAGAAATGCCTTTCAACCGGTGGCGAGTTCGTAACTCAAATCTGGGCCATTCTTTCTCATTGCAACATACAAGAAAGCAATCTCTGGCCACAGCAGGAATCTCCAAATGATAATGAAGCAGAGCAGCAGGAAGAAAGTGTAAGTGGCAATCAGGCATCTTTTTCAGCACAACAGCGGGCAGCTGCTGGTCATGGTGGAGTAAGGGATGATGAAGCTGGACCGAGTGGGACAAAGCCAAATGATGAAACAAAAGACGATGACGAAAAGAAGATGTCGGTTAATTTGAGTTCAAGAACACCAATAAAACGTGACAGTGTGAGTTAGTATAATATTGTTGAACTCGAGCTTTCTTATGTCACATATATGTTCCTTTCTTAAGAACATGTCTGTTCATTCTCCATGTGTAGTAGTTTATATGGTTGTTGCTTGCATGTACTAAGGTGTGGTCTCTTGCCGTACTATGTACTTTAAACAGCTGCAAATATCGTGTTACT]

[+] EMBL AK119329             [CTCTCGCCTATCTTCTCCTATAATCTGAGCCTGGTCGCTCGTGGTTCACCGGGAACAGACGCGCTCGATCGCGCGCCTCGTCGGCAGTCGCCACCGGTGAGCACTCTACGCCGTCGAGCTAGCGCCCGTGGCTGCCTTCGCTCCAACAGCAACCCGACGAACGGCCCTCGCCGCGCGAAGCCCTTCAATTCTTCCGAAGAATCTATCAAATCAGTGAGATTAATCTACACAAATGCTTGCAGCTGAAGAACTGAAACTGATCATCCCGTTGTAGTTCCCCCCCTGAGACCCAACGGCGGCGTATGTCGATCTCCTCGTGCCGGACCTGAGCAACGTCGTCGGACAAACTCGATCTCCCCGCTCCGAACAACCACTCGCCTAAACTCTTCAAACCGGAAGAATTAATAGGAGAAAAACATGGAGAAGCCGAGTGAAATTGCCAAATCGATATTTCTATTTCTGAAATCAGACGAGGCCATGGTCATGCGGATCGAGTTCCTGGTGGTGGTCACGGCCGTATTGTTCCTCCTGATGTCTATCTTGGACATGTTCCGTCATCGGTCACGCCACAACCTCATCAAGTATTTTCTATTGATCCTAGACGGCATAAGCGATTCCACGTTGATCTACACAATTGGGCTGATGCAGAGTGTGCCTTCGCTGAAGAAAGACCTGTTCCCGGTGTGGGCGCTGATGCTGGTCAACCTCCGGAGCAGCGTCTGCTTCATCTCGGCGTACGGCATCCCTGACCAACAGAACCGCCGGTTTACAGAGGTAGCAAGGGTGATGGCACTTATAGGGGTGGCATTCTTGAACACAACGTTCAACAGCCGGTTCAAGCATCCTATCTGGGCACTTTGGGCGATGCAGGTAGTGAGATGTGGCTACCTCTTAAGGGTGTACAGGCTCGCCACAAGGTCCTACTTGCATGGCTGGAGCTCACCGCTTCTGACAGCATACATGGGCACCCCCGATGGCGTTGCTGCGAACGGTGATACAGCCACAATGCGAGGATACAAGTACTTGGTATCTGGAGATCAGAAGCAAACAGTTGAAGTGAAGCCTCCTGAGTACAAGTTCACTCTGTTTGTCCCAGAGCACAGAAGGAAAATGCTCGTCACACTTGACAAGGTTTGGCAGCAGGATGCAAGCGACACTAGTTCGACTGACATCCTAACACCACAGATGAAAGACATGTGCCTGTCTTTTGCATTATACCGCTTACTCCGTTGCAGATTTGATGACTTGAGCCTGCCAAGTGACAGTGTCGTCAACACCAGAAGATTAATCAGTAAAATCATCGGCAAAGGCAACGCGGATTTCGCTACACAAATAAGCAACTACAGCGAGAAGACCTTCAGGATTGTGAGATCAGAGCTCGCGTTCCTCAACGACTACTTCTACACAAGATACCCCGTCCTCTTCTGGCGTGGCTTCCCAATCTTTGCTTCCTGCCACCCTGTGCTAACAATTGCTTTCACTGTTTGGCTTGGAAAGGATCTCCATAAAATTTACAAGCCTAAGCAGGGGGGCGCCAATGTTGATATCATCATTACGTGGGGGTTCATGTTCATCATCGTGTTCAAGGAGCTTTGGAAGATGATCATCTACTTGCTGTCAGACTGGACCAAGGTGATGGTGCTGTGCGAGTACACTGCCGACAGCTTTAAGCATGCTCCACGATGGCTTTGCAAGGGCTTTCTCTGGCTTCTATGCACTCGAAGGTCCAAAATTGTCCACCATTGGCACAATAAGGTAAATCAGTATGAATTCCTTCAATCATTTAATTACAGGCCTTGCAAGTGGAACATTCTCTACTATGGAACCCTTGGATTGTTCGCAAGACGAAGAGATGGCGAGAAACCAGGCAAATCAATCGAGCTGCCAGAAGACGTGAAGTCAGCCATTTTGAGGTCTCTCTGCTCACAAAACCTTGAGCGAGATTCTTTGGAGCCAAATTTCCCAATATTGTTTTCGACATTTGGACTTCCATGCTCCCACATCATCCTCGTGTGGCATATAGCAACGACCCTATGCGAGATTGAGCTTTCTCAACGTTACAACGGATGCTTAACTGATTCTGAGCTGCAGCATGCAGTCAAGGCTGGTAAGAACTCCCAGCCATACGTTGTAAAGGAAGAAAGGCTGGAAGGTGCACTGCAAGCTAATTACATAGTCGCAAGTTGTATTTCAAGATACTGTGCCTATCTGCTTGTCTCAGAGCCAGATTTGCTACCTGATACCTACTTAAGTTCTGCGGAGGTATTTGAAAGCACCGTGAAAGAGGCTTCAGATGTTCTAAAGGGATCTGACAACCTGCAGAGCATATACAGAAAACTGATGTATCATGGGGATGTTGTGAATGTCGATAATATGAACAGACGTCACCCAAGTGTGATACTCGCGAGAAGTGCACAAGTTGCTAAGTCCTTGGTTGAAACTGAAGTCATGGATCGTTGGGAGATGTTGGCTGGGGTGTGGGCCGAAATGTTAGTACATATAGCTCCCTCTTGGAATGCAGCAGCTCACAAGAAATGCCTTTCAACCGGTGGCGAGTTCGTAACTCAAATCTGGGCCATTCTTTCTCATTGCAACATACAAGAAAGCAATCTCTGGCCACAGCAGGAATCTCCAAATGATAATGAAGCAGAGCAGCAGGAAGAAAGTGTAAGTGGCAATCAGGCATCTTTTTCAGCACAACAGCGGGCAGCTGCTGGTCATGGTGGAGTAAGGGATGATGAAGCTGGACCGAGTGGGACAAAGCCAAATGATGAAACAAAAGACGATGACGAAAAGAAGATGTCGGTTAATTTGAGTTCAAGAACACCAATAAAACGTGACAGTGTGAGTTAGTATAATATTGTTGAACTCGAGCTTTCTTATGTCACATATATGTTCCTTTCTTAAGAACATGTCTGTTCATTCTCCATGTGTAGTAGTTTATATGGTTGTTGCTTGCATGTACTAAGGTGTGGTCTCTTGCCGTACTATGTACTTTAAACAGCTGCAAATATCGTGTTAC ]
[+] EMBL CA754078             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCTTAACTGATTCTGAGCTGCAGCATGCAGTCAAGGCTGGTAAGAACTCCCAGCCATACGTTGTAAAGGAAGAAAGGCTGGAAGGTGCACTGCAAGCTAATTACATAGTCGCAAGTTGTATTTCAAGATACTGTGCCTATCTGCTTGTCTCAGAGCCAGATTTGCTACCTGATACCTACTTAAGTTCTGCGGAGGTATTTGAAAGCACCGTGAAAGAGGCTTCAGATGTTCTAAAGGGATCTGACAACCTGCAGAGCATATACAGAAAACTGATGTATCATGGGGATGTTGTGAATGTCGATAATATGAACAGACGTCACCCAAGTGTGATACTCGCGAGAAGTGCACAAGTTGCTAAGTCCTTGGTTGAAACTGAAGTCATGGATCGTTGGGAGATGTTGGCTGGGGTGTGGGCCGAAATGTTAGTACATATAGCTCCCTCTTGGAATGCAGCAGCTCACAAGAAATGCCTTTCAACCGGTGGCGAGTTCGTAACTCANATCTGGGCCATTCTTTCTCATTGCAACATACNAGAAAGCAATCTCTGGCCACAGCAGGAATCTCCNAATGATAATGAAGCAGAGCAGCAGGAAGAAAGTGTAAG                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB667326             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTTGCTACCTGATACCTACTTAAGTTCTGCGGAGGTATTTGAAAGCACCGTGAAAGAGGCTTCAGATGTTCTAAAGGGATCTGACAACCTGCAGAGCATATACAGAAAACTGATGTATCATGGGGATGTTGTGAATGTCGATAATATGAACAGACGTCACCCAAGTGTGATACTCGCGAGAAGTGCACAAGTTGCTAAGTCCTTGGTTGAAACTGAAGTCATGGATCGTTGGGAGATGTTGGCTGGGGTGTGGGCCGAAATGTTAGTACATATAGCTCCCTCTTGGAATGCAGCAGCTCACAAGAAATGCCTTTCAACCGGTGGCGAGTTCGTAACTCAAATCTGGGCCATTCTTTCTCATTGCAACATACAAGAAAGCAATCTCTGGCCACAGCAGGAATCTCCAAATGATAATGAAGCAGAGCAGCAGGAAGAAAGTGTAAGTGGCAATCAGGCATCTTTTTCAGCACAACAGCGGGCAGCTGCTGGTCATGGTGGAGTAAGGGATGATGAAGCTGGACCGAGTGGGACAAAGCCAAATGATGAAACAAAAGACGATGACGAAAAGAAGATGTCGGTTAATTTGAGTTCAAGAACACCAATAAAACGTGACAGTGTGAGTTAGTATAATATTGTTGAACTCGAGCTTTCTTATGTCACATATATGTTCCTTTCTTAAGAACATGTCTGTTCATTCTCCATGTGTAGTAGTTTATATGGTTGTTGCTTGCATGTACTAAGGTGTGGTCTCTTGCCGTACTATGTACTTTAAACAGCTGCAAATATCGTGTTACT]




>consensus_3889#0
CTCTCGCCTATCTTCTCCTATAATCTGAGCCTGGTCGCTCGTGGTTCACCGGGAACAGAC
GCGCTCGATCGCGCGCCTCGTCGGCAGTCGCCACCGGTGAGCACTCTACGCCGTCGAGCT
AGCGCCCGTGGCTGCCTTCGCTCCAACAGCAACCCGACGAACGGCCCTCGCCGCGCGAAG
CCCTTCAATTCTTCCGAAGAATCTATCAAATCAGTGAGATTAATCTACACAAATGCTTGC
AGCTGAAGAACTGAAACTGATCATCCCGTTGTAGTTCCCCCCCTGAGACCCAACGGCGGC
GTATGTCGATCTCCTCGTGCCGGACCTGAGCAACGTCGTCGGACAAACTCGATCTCCCCG
CTCCGAACAACCACTCGCCTAAACTCTTCAAACCGGAAGAATTAATAGGAGAAAAACATG
GAGAAGCCGAGTGAAATTGCCAAATCGATATTTCTATTTCTGAAATCAGACGAGGCCATG
GTCATGCGGATCGAGTTCCTGGTGGTGGTCACGGCCGTATTGTTCCTCCTGATGTCTATC
TTGGACATGTTCCGTCATCGGTCACGCCACAACCTCATCAAGTATTTTCTATTGATCCTA
GACGGCATAAGCGATTCCACGTTGATCTACACAATTGGGCTGATGCAGAGTGTGCCTTCG
CTGAAGAAAGACCTGTTCCCGGTGTGGGCGCTGATGCTGGTCAACCTCCGGAGCAGCGTC
TGCTTCATCTCGGCGTACGGCATCCCTGACCAACAGAACCGCCGGTTTACAGAGGTAGCA
AGGGTGATGGCACTTATAGGGGTGGCATTCTTGAACACAACGTTCAACAGCCGGTTCAAG
CATCCTATCTGGGCACTTTGGGCGATGCAGGTAGTGAGATGTGGCTACCTCTTAAGGGTG
TACAGGCTCGCCACAAGGTCCTACTTGCATGGCTGGAGCTCACCGCTTCTGACAGCATAC
ATGGGCACCCCCGATGGCGTTGCTGCGAACGGTGATACAGCCACAATGCGAGGATACAAG
TACTTGGTATCTGGAGATCAGAAGCAAACAGTTGAAGTGAAGCCTCCTGAGTACAAGTTC
ACTCTGTTTGTCCCAGAGCACAGAAGGAAAATGCTCGTCACACTTGACAAGGTTTGGCAG
CAGGATGCAAGCGACACTAGTTCGACTGACATCCTAACACCACAGATGAAAGACATGTGC
CTGTCTTTTGCATTATACCGCTTACTCCGTTGCAGATTTGATGACTTGAGCCTGCCAAGT
GACAGTGTCGTCAACACCAGAAGATTAATCAGTAAAATCATCGGCAAAGGCAACGCGGAT
TTCGCTACACAAATAAGCAACTACAGCGAGAAGACCTTCAGGATTGTGAGATCAGAGCTC
GCGTTCCTCAACGACTACTTCTACACAAGATACCCCGTCCTCTTCTGGCGTGGCTTCCCA
ATCTTTGCTTCCTGCCACCCTGTGCTAACAATTGCTTTCACTGTTTGGCTTGGAAAGGAT
CTCCATAAAATTTACAAGCCTAAGCAGGGGGGCGCCAATGTTGATATCATCATTACGTGG
GGGTTCATGTTCATCATCGTGTTCAAGGAGCTTTGGAAGATGATCATCTACTTGCTGTCA
GACTGGACCAAGGTGATGGTGCTGTGCGAGTACACTGCCGACAGCTTTAAGCATGCTCCA
CGATGGCTTTGCAAGGGCTTTCTCTGGCTTCTATGCACTCGAAGGTCCAAAATTGTCCAC
CATTGGCACAATAAGGTAAATCAGTATGAATTCCTTCAATCATTTAATTACAGGCCTTGC
AAGTGGAACATTCTCTACTATGGAACCCTTGGATTGTTCGCAAGACGAAGAGATGGCGAG
AAACCAGGCAAATCAATCGAGCTGCCAGAAGACGTGAAGTCAGCCATTTTGAGGTCTCTC
TGCTCACAAAACCTTGAGCGAGATTCTTTGGAGCCAAATTTCCCAATATTGTTTTCGACA
TTTGGACTTCCATGCTCCCACATCATCCTCGTGTGGCATATAGCAACGACCCTATGCGAG
ATTGAGCTTTCTCAACGTTACAACGGATGCTTAACTGATTCTGAGCTGCAGCATGCAGTC
AAGGCTGGTAAGAACTCCCAGCCATACGTTGTAAAGGAAGAAAGGCTGGAAGGTGCACTG
CAAGCTAATTACATAGTCGCAAGTTGTATTTCAAGATACTGTGCCTATCTGCTTGTCTCA
GAGCCAGATTTGCTACCTGATACCTACTTAAGTTCTGCGGAGGTATTTGAAAGCACCGTG
AAAGAGGCTTCAGATGTTCTAAAGGGATCTGACAACCTGCAGAGCATATACAGAAAACTG
ATGTATCATGGGGATGTTGTGAATGTCGATAATATGAACAGACGTCACCCAAGTGTGATA
CTCGCGAGAAGTGCACAAGTTGCTAAGTCCTTGGTTGAAACTGAAGTCATGGATCGTTGG
GAGATGTTGGCTGGGGTGTGGGCCGAAATGTTAGTACATATAGCTCCCTCTTGGAATGCA
GCAGCTCACAAGAAATGCCTTTCAACCGGTGGCGAGTTCGTAACTCAAATCTGGGCCATT
CTTTCTCATTGCAACATACAAGAAAGCAATCTCTGGCCACAGCAGGAATCTCCAAATGAT
AATGAAGCAGAGCAGCAGGAAGAAAGTGTAAGTGGCAATCAGGCATCTTTTTCAGCACAA
CAGCGGGCAGCTGCTGGTCATGGTGGAGTAAGGGATGATGAAGCTGGACCGAGTGGGACA
AAGCCAAATGATGAAACAAAAGACGATGACGAAAAGAAGATGTCGGTTAATTTGAGTTCA
AGAACACCAATAAAACGTGACAGTGTGAGTTAGTATAATATTGTTGAACTCGAGCTTTCT
TATGTCACATATATGTTCCTTTCTTAAGAACATGTCTGTTCATTCTCCATGTGTAGTAGT
TTATATGGTTGTTGCTTGCATGTACTAAGGTGTGGTCTCTTGCCGTACTATGTACTTTAA
ACAGCTGCAAATATCGTGTTACT
clustalw multiple alignements is not computed in this case