These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 801 fasta sequence [GGCGCACACGCAGCCGAGCGCGACGCCGCCCTCCATTGGCCTCGCCAGGCTGACTCAGTTGCCTGTGAGACTTCTGAGGGAGTCACCAGCCTAAAGTCACATGTAGTACTTGTTGGAGAGGAAAAATGCTGAATTTAGGAAGCAGATTAATGAACTAACAATGAAGCTTCAATTAGCTGGGCAAGGAAAAGACGAGGTTCTATATAAGGCTGGTCCTTTTGGTACTGTCAAGGCTGNTAGAAAAAATCCAACAGNTATCCCTGATGAATCCATAAATCCCAGATTGGCCAAGATATTGCAACAGGNTGCTATAAAGAAAGAACTAATTGTTGCGTTGGCAAACTCCAATGTGAGAGAGATGCTTGAGATGTGGTTTACTAACATCAAACGAGTTGGGATTTCAAATTATTTAATTGTTGCATTGGATGACAGCACCGAAACCTTTTGCAAGTCTAAAGGTGTTCCATTTTATAGGCGGGATCCTGACGAAGGAGTTGACAACATCGGAAAGGTAGGTGGAAACCATGCTGNGTCTGGACTAAAGTTTCGCATATTGAGGGAATTCTTGCAGCTTGGATATAGTGTGCTCCTATCAGATATCGATATTATTTTCTTCCAGAATCCGTTTGATCATCTTTACAGAGATGCTGATGTANAGTCAATGAGTGATGGTCATGACAATANGACAGCTTATGGNTTCAATGATGTATTTGNTGAGCCCTTAATGGGCT-GGCAAGATACGCACACACAATGCGCATATGGGNTTATAATTCCGGATTTTTCTTTCTAAAGGCNACAATT] [+] EMBL CA767246 [GGCGCACACGCAGCCGAGCGCGACGCCGCCCTCCATTGGCCTCGCCAGGCTGACTCAGTTGCCTGTGAGACTTCTGAGGGAGTCACCAGCCTAAAGTCACATGTAGTACTTGTTGGAGAGGAAAAATGCTGAATTTAGGAAGCAGATTAATGAACTAACAATGAAGCTTCAATTAGCTGGGCAAGGAAAAGACGAGGTTCTATATAAGGCTGGTCCTTTTGGTACTGTCAAGGCTGNTAGAAAAAATCCAACAGNTATCCCTGATGAATCCATAAATCCCAGATTGGCCAAGATATTGCAACAGGNTGCTATAAAGAAAGAACTAATTGTTGCGTTGGCAAACTCCAATGTGAGAGAGATGCTTGAGATGTGGTTTACTAACATCAAACGAGTTGGGATTTCAAATTATTTAATTGTTGCATTGGATGACAGCACCGAAACCTTTTGCAAGTCTAAAGGTGTTCCATTTTATAGGCGGGATCCTGACGAAGGAGTTGACAACATCGGAAAGGTAGGTGGAAACCATGCTGNGTCTGGACTAAAGTTTCGCATATTGAGGGAATTCTTGCAGCTTGGATATAGTGTGCTCCTATCAGATATCGATATTATTTTCTTCCAGAATCCGTTTGATCATCTTTACAGAGATGCTGATGTANAGTCAATGAGTGATGGTCATGACAATANGACAGCTTATGGNTTCAATGATGTATTTGNTGAGCCCTTAATGGGCT GGCAAGATACGCACACACAATGCGCATATGGGNTTATAATTCCGGATTTTTCTTTCTAAAGGCNACAATT] [+] EMBL CA997950 [ CCTAAAGTCACATGTAGTA TTGTTGGAGAGGAAAAATGCTGAATTTAGGAAGCAGATTAATGAACTAACAATGAAGCTTCAATTAGCTGGGCAAGGAAAAGACGAGGTTCTATATAAGGCTGGTCCTTTTGGTACTGTCAAGGCTATTAGAAAAAATCCAACAGTTATCCCTGATGAATCCATAAATCCCAGATTGGCCAAGATATTGCAACAGGTTGCTATAAAGAAAGAACTAATTGTTGCGTTGGCAAACTCCAATGTGAGAGAGATGCTTGAGATGTGGTTTACTAACATCAAACGAGTTGGGATTTCAAATTATTTAATTGTTGCATTGGATGACAGCACTGAAACCTTTTGCAAGTCTAAAGGTGTTCCATTTTATAGGCGGGATCCTGACGAAGGAGTTGACAATATTGGAAAGGTAGGTGGAAACCATGCTGTGTCTGGACTAAAGTTTCGCATATTGAGGGAATTCTTGCAGCTTGGATATAGTGTGCTCCTATCAGATATCGATATTATTTTCTTCCAGAATCCGTTTGATCATCTTTACAGAGATGCTGATGTAGAGTCAATGAGTGATGGTCATGACAATAGGACAGCTTATGGTTTCAATGATGTATTTGATGAGCCCTTAATGGGCTGGGGCAGATACGCACACACAATGCGCATATGGGTTTATAATTCCG ] consensusID : consensus_3897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [TTTTTTTTTTTTTTTGGATCCAAAATGTGATGAGCTCTTTTATAGAGATCACTAATCTGTGTCTTCATTCAGGGTTCCAATAGCAACAGGTACACAAAAAAAAAAGTCCATTTGCCGTGTTACGACAACTACAGTTAATCAGTTATTATTCTGATCCATCAGGAAAATGTTCAAGGGCATTCTGTTTTCCATTGACGTAAAACTCAATCACTGCTTTCATGCGTCCCGACTTATCAGGATGGTAATTCAAGTGCACAATCACTGGCTTCAACTTGCGCAGATTAGCATCTTTCCTCACAGTCTTGAATAGAACTTTGCTGTTCATAAATTGGTATATATCCATGGTTCTTTTGGATATATGGAGACCTTCATAACCTGGATGTGAGGGGAAGAACAGTTCCTCATTGAAAACAGCTTGATCCCATGATTTGGGTTCACGAGAAAGGCGGCCAGCTACTCTATCCAAAAGCTCAATAGAAGGAATTGTTGGCCTTATGAAGAAAAATCCGGAATTATAAACCCATATGCGCATTGTGTGTGCGTATCTTGCCCAGCCCATTAAGGGCTCATCAAATACATCATTGAAACCCCCCTTGTCTCGGCCTC] [+] EMBL CA762561 [TTTTTTTTTTTTTTTGGATCCAAAATGTGATGAGCTCTTTTATAGAGATCACTAATCTGTGTCTTCATTCAGGGTTCCAATAGCAACAGGTACACAAAAAAAAAAGTCCATTTGCCGTGTTACGACAACTACAGTTAATCAGTTATTATTCTGATCCATCAGGAAAATGTTCAAGGGCATTCTGTTTTCCATTGACGTAAAACTCAATCACTGCTTTCATGCGTCCCGACTTATCAGGATGGTAATTCAAGTGCACAATCACTGGCTTCAACTTGCGCAGATTAGCATCTTTCCTCACAGTCTTGAATAGAACTTTGCTGTTCATAAATTGGTATATATCCATGGTTCTTTTGGATATATGGAGACCTTCATAACCTGGATGTGAGGGGAAGAACAGTTCCTCATTGAAAACAGCTTGATCCCATGATTTGGGTTCACGAGAAAGGCGGCCAGCTACTCTATCCAAAAGCTCAATAGAAGGAATTGTTGGCCTTATGAAGAAAAATCCGGAATTATAAACCCATATGCGCATTGTGTGTGCGTATCTTGCCCAGCCCATTAAGGGCTCATCAAATACATCATTGAAACCCCCCTTGTCTCGGCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3897#0 GGCGCACACGCAGCCGAGCGCGACGCCGCCCTCCATTGGCCTCGCCAGGCTGACTCAGTT 60 consensus_3897#1 ------------------------------------------------------------ consensus_3897#0 GCCTGTGAGACTTCTGAGGGAGTCACCAGCCTAAAGTCACATGTAGTACTTGTTGGAGAG 120 consensus_3897#1 ---------------------------------------TTTTTTTTTTTTTTTGGATCC 21 * * * ** ***** consensus_3897#0 GAAAAATGCTGAATT-TAGGAAGCAGATTAATGAACTAACAATGAAGCTTCAATTAGCTG 179 consensus_3897#1 AAAATGTGATGAGCTCTTTTATAGAGATCACTAATCT------GTGTCTTCATTCA---G 72 *** ** *** * * * **** * * * ** * ***** * * * consensus_3897#0 GGCAAGGAAAAGACGAGGTTCTATATAAGGCTGGTCCTTTTGGTACTGTCAAGGCTGNTA 239 consensus_3897#1 GGTTCCAATAGCAACAGGTACACAAAAAAAAAAGTCCATTTGCCG-TGTTACGACAACTA 131 ** * * * **** * * ** **** **** *** * * * ** consensus_3897#0 GAAAAAATCCAACAGNTATCCCTGATGAATCCATAAATCCCAGATTGGCCAAGATATTGC 299 consensus_3897#1 CAGTTAATC-AGTTATTATTC-TGATCCATCAGGAAA------ATGTTCAAGGGCATT-- 181 * **** * *** * **** *** *** ** * * * *** consensus_3897#0 AACAGGNTGCTATAAAGAAAGAACT-AATTGTTGCGTTGGCAAACTCCAA--TGTGAGAG 356 consensus_3897#1 --CTGTTTTCCATTGACGTAAAACTCAATCACTGCTTTCATGCGTCCCGACTTATCAGGA 239 * * * * ** * * **** *** *** ** ** * * * ** consensus_3897#0 AGATGCTTGAGATGTG-GTTTACTAACATCAAACGAGTTGGGATTTCAAATTATTTAATT 415 consensus_3897#1 TGGTAATTCAAGTGCACAATCACTGGCTTCAA-CTTGCGCAGATT--AGCATCTTTCCTC 296 * * ** * ** * *** * **** * * **** * * *** * consensus_3897#0 GTTGCATTGGATGACAGCACCGAAACCTTTTGCAAGTCTAAAGGTGTTCCATTTTATAGG 475 consensus_3897#1 ACAGTCTTGAATAGAA-----------CTTTGCTGTTCATAAATTGGT-----ATATATC 340 * *** ** * ***** ** ** ** * **** consensus_3897#0 CGGGATCCTGACGAAGGAGTTGACAACATCGGAAAGGTAGGTGGAAACCATGCTGNGTCT 535 consensus_3897#1 CATGGTTCTTTTGGATATATGGAGACCTTCATAA-------------CCTGGATGTGAGG 387 * * * ** * * * ** * * ** ** ** * ** * consensus_3897#0 GGACTAAAGTTTCGCATATTGAGGGAATTCTTGCAGCTTGGATATAGTGTGCTCCTATCA 595 consensus_3897#1 GGAAGAACAGTTC-CTCATTGAAAACAG-CTTGATCCCATGATTTGG-GTTCACGAGAAA 444 *** ** *** * ***** * **** * *** * * ** * * * consensus_3897#0 GATATCGATATTATTTTCTTCCAGAATCCGTTTGATCATCTTTACAGAGATGCTGATGTA 655 consensus_3897#1 GGCGGCCA-GCTACTCTATCCAAAAGCTCAATAGAAGGAATT-GTTGGCCTTATGAAGAA 502 * * * ** * * * * * * * * ** ** * * *** * * consensus_3897#0 NAGTCAATGAGTGATGGTCATGACAATANGACAGCTTATGGNTTCAATGATGTATTTGNT 715 consensus_3897#1 AAATCCG-GAATTATAAAC----CCATATG-CGCATTGTGTGTGCG----TAT-CTTGCC 551 * ** ** * ** * * *** * * ** ** * * * * *** consensus_3897#0 GAGCCCTTAATGGGCTGGCAAGATACGCACACACAATGCGCATATGGGNTTATAATTCCG 775 consensus_3897#1 CAGCCCATTAAGGGCTCATCAAATACATCATTGAAACCCCCCTT---GTCTCGGCCTC-- 606 ***** * * ***** * **** ** * * * * * ** consensus_3897#0 GATTTTTCTTTCTAAAGGCNACAATT 801 consensus_3897#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||