cluster # 391

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Oryza sativa
cluster # 391 cluster # 391 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_391#0 length = 693 sequences # 1

consensus_391#1 length = 687 sequences # 1

consensusID : consensus_391#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [TTTTTTTTTTGACCGTAGTTGAACGAATGGTGTAAGCAACACTCTTTCAGTCTCAGATAATACAAAAAATTCCAGTTGATGGATACATGGAAACTAGGAAGCAGGTCAGATTTCCTACAGGAGAGTGCTGCTTATAGGTTCACTGTTCAACCAGAATGATCTAAGTTTCATCTCGGGAATCCAAAAATTCAGATTTTCAATTGTTGAATCAGTATATCTTGTTCTGCTCCAACAGGAATATGACTGTTCTGTTTAATCAACAATGAAACACCTTTGTCTATTGAAATCCTCGTATCCAACATCAACAAGACAGAGCCCATCTGGAGGCGCTGGGGGAGCAGTAGCTCGCCTGCAAGTGGCTTCCATCAGGTTCAGCAAAGCATCTTCTTCAGCACCAGCAGCTGCCTCCCTTATGGCGGTCGCAACAAGAACCCTAACCATCTTGCGCAGAAACCTGTTTGCGACTAGCTCAATGCATATGGCCCTGGTGGTGCCTTCTTCACAATTCTCATCAGCAGTGTGTAGTTTGGCCACTGCAGCTCGAGAATGGAACATGAAACACTCTGTAGGTGGACCAACACTTCGTGAAGCTTGTGTATCACGTGCAAACATCTTGTAAGATAGTGATTTTCCTTCCAGTTGTCTAATGATTTTGTCAACCTTACCCACATCANAGCTTTGAGGTTTTATGTT]

[+] EMBL CA760217             [TTTTTTTTTTGACCGTAGTTGAACGAATGGTGTAAGCAACACTCTTTCAGTCTCAGATAATACAAAAAATTCCAGTTGATGGATACATGGAAACTAGGAAGCAGGTCAGATTTCCTACAGGAGAGTGCTGCTTATAGGTTCACTGTTCAACCAGAATGATCTAAGTTTCATCTCGGGAATCCAAAAATTCAGATTTTCAATTGTTGAATCAGTATATCTTGTTCTGCTCCAACAGGAATATGACTGTTCTGTTTAATCAACAATGAAACACCTTTGTCTATTGAAATCCTCGTATCCAACATCAACAAGACAGAGCCCATCTGGAGGCGCTGGGGGAGCAGTAGCTCGCCTGCAAGTGGCTTCCATCAGGTTCAGCAAAGCATCTTCTTCAGCACCAGCAGCTGCCTCCCTTATGGCGGTCGCAACAAGAACCCTAACCATCTTGCGCAGAAACCTGTTTGCGACTAGCTCAATGCATATGGCCCTGGTGGTGCCTTCTTCACAATTCTCATCAGCAGTGTGTAGTTTGGCCACTGCAGCTCGAGAATGGAACATGAAACACTCTGTAGGTGGACCAACACTTCGTGAAGCTTGTGTATCACGTGCAAACATCTTGTAAGATAGTGATTTTCCTTCCAGTTGTCTAATGATTTTGTCAACCTTACCCACATCANAGCTTTGAGGTTTTATGTT]




>consensus_391#0
TTTTTTTTTTGACCGTAGTTGAACGAATGGTGTAAGCAACACTCTTTCAGTCTCAGATAA
TACAAAAAATTCCAGTTGATGGATACATGGAAACTAGGAAGCAGGTCAGATTTCCTACAG
GAGAGTGCTGCTTATAGGTTCACTGTTCAACCAGAATGATCTAAGTTTCATCTCGGGAAT
CCAAAAATTCAGATTTTCAATTGTTGAATCAGTATATCTTGTTCTGCTCCAACAGGAATA
TGACTGTTCTGTTTAATCAACAATGAAACACCTTTGTCTATTGAAATCCTCGTATCCAAC
ATCAACAAGACAGAGCCCATCTGGAGGCGCTGGGGGAGCAGTAGCTCGCCTGCAAGTGGC
TTCCATCAGGTTCAGCAAAGCATCTTCTTCAGCACCAGCAGCTGCCTCCCTTATGGCGGT
CGCAACAAGAACCCTAACCATCTTGCGCAGAAACCTGTTTGCGACTAGCTCAATGCATAT
GGCCCTGGTGGTGCCTTCTTCACAATTCTCATCAGCAGTGTGTAGTTTGGCCACTGCAGC
TCGAGAATGGAACATGAAACACTCTGTAGGTGGACCAACACTTCGTGAAGCTTGTGTATC
ACGTGCAAACATCTTGTAAGATAGTGATTTTCCTTCCAGTTGTCTAATGATTTTGTCAAC
CTTACCCACATCANAGCTTTGAGGTTTTATGTT

consensusID : consensus_391#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence

                              [TTTTTTTTTTTTTTTTCATCTCGGGAATCCAAAAATTCAAATTTTCAATTGTTGAATCAGTATATCTTGTTCTGCTCCAACAGGAATATGACTGTTCTGTTTAATCAACAATGAAACACCTTTGTCTATTGAAATCCTCGTATCCAACATCAACAAGACAGAGCCCATCTGGAGGCGCTGGGGGAGCAGTAGCTCGCCTGCAAGTGGCTTCCATCAGGTTCAGCAAAGCATCTTCTTCAGCACCAGCAGCTGCCTCCCTTATGGCGGTCGCAACAAGAACCCTAACCATCTTGCGCAAAAACCTGTTTGCGACTAGCTCAATGCATATGGCCCTGGGGGGGCCTTCTTCACAATTCTGCAAAAATTGGGAAAACGGAATGGAACATGGTATTACCAGTTGAAATGATATATGTGCATGCAAAATGATAATTGAAAAAAAAAAAACCAGATAAGGGAGTTATCAATTGCATAGCCATGATGCTAAATTTTATGAGTCCACATAATATATTTAGTTTTGATATCAGCACCTCAAAACTATATAATCCACAATTGCATACACGTCATAATGCCATACTCAAGCTATGCCAATGTCCAGCAACTAAGGTTAAGGTTACAAACGCGATACCACAAAATAATACTGTTACTTTTATGTAGAGATTAGCAGTACTAGAATGGAAGCACTGGGAA]

[+] EMBL CA760216             [TTTTTTTTTTTTTTTTCATCTCGGGAATCCAAAAATTCAAATTTTCAATTGTTGAATCAGTATATCTTGTTCTGCTCCAACAGGAATATGACTGTTCTGTTTAATCAACAATGAAACACCTTTGTCTATTGAAATCCTCGTATCCAACATCAACAAGACAGAGCCCATCTGGAGGCGCTGGGGGAGCAGTAGCTCGCCTGCAAGTGGCTTCCATCAGGTTCAGCAAAGCATCTTCTTCAGCACCAGCAGCTGCCTCCCTTATGGCGGTCGCAACAAGAACCCTAACCATCTTGCGCAAAAACCTGTTTGCGACTAGCTCAATGCATATGGCCCTGGGGGGGCCTTCTTCACAATTCTGCAAAAATTGGGAAAACGGAATGGAACATGGTATTACCAGTTGAAATGATATATGTGCATGCAAAATGATAATTGAAAAAAAAAAAACCAGATAAGGGAGTTATCAATTGCATAGCCATGATGCTAAATTTTATGAGTCCACATAATATATTTAGTTTTGATATCAGCACCTCAAAACTATATAATCCACAATTGCATACACGTCATAATGCCATACTCAAGCTATGCCAATGTCCAGCAACTAAGGTTAAGGTTACAAACGCGATACCACAAAATAATACTGTTACTTTTATGTAGAGATTAGCAGTACTAGAATGGAAGCACTGGGAA]




>consensus_391#1
TTTTTTTTTTTTTTTTCATCTCGGGAATCCAAAAATTCAAATTTTCAATTGTTGAATCAG
TATATCTTGTTCTGCTCCAACAGGAATATGACTGTTCTGTTTAATCAACAATGAAACACC
TTTGTCTATTGAAATCCTCGTATCCAACATCAACAAGACAGAGCCCATCTGGAGGCGCTG
GGGGAGCAGTAGCTCGCCTGCAAGTGGCTTCCATCAGGTTCAGCAAAGCATCTTCTTCAG
CACCAGCAGCTGCCTCCCTTATGGCGGTCGCAACAAGAACCCTAACCATCTTGCGCAAAA
ACCTGTTTGCGACTAGCTCAATGCATATGGCCCTGGGGGGGCCTTCTTCACAATTCTGCA
AAAATTGGGAAAACGGAATGGAACATGGTATTACCAGTTGAAATGATATATGTGCATGCA
AAATGATAATTGAAAAAAAAAAAACCAGATAAGGGAGTTATCAATTGCATAGCCATGATG
CTAAATTTTATGAGTCCACATAATATATTTAGTTTTGATATCAGCACCTCAAAACTATAT
AATCCACAATTGCATACACGTCATAATGCCATACTCAAGCTATGCCAATGTCCAGCAACT
AAGGTTAAGGTTACAAACGCGATACCACAAAATAATACTGTTACTTTTATGTAGAGATTA
GCAGTACTAGAATGGAAGCACTGGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_391#0      TTTTTTTTTTGACCGTAGTTGAACGAATGGTGTAAGCAACACTCTTTCAGTCTCAGATAA 60
consensus_391#1      ------------------------------------------------------------
                                                                                 

consensus_391#0      TACAAAAAATTCCAGTTGATGGATACATGGAAACTAGGAAGCAGGTCAGATTTCCTACAG 120
consensus_391#1      ------------------------------------------------------------
                                                                                 

consensus_391#0      GAGAGTGCTGCTTATAGGTTCACTGTTCAACCAGAATGATCTAAGTTTCATCTCGGGAAT 180
consensus_391#1      --------------------------------TTTTTTTTTTTTTTTTCATCTCGGGAAT 28
                                                         *  * *   ***************

consensus_391#0      CCAAAAATTCAGATTTTCAATTGTTGAATCAGTATATCTTGTTCTGCTCCAACAGGAATA 240
consensus_391#1      CCAAAAATTCAAATTTTCAATTGTTGAATCAGTATATCTTGTTCTGCTCCAACAGGAATA 88
                     *********** ************************************************

consensus_391#0      TGACTGTTCTGTTTAATCAACAATGAAACACCTTTGTCTATTGAAATCCTCGTATCCAAC 300
consensus_391#1      TGACTGTTCTGTTTAATCAACAATGAAACACCTTTGTCTATTGAAATCCTCGTATCCAAC 148
                     ************************************************************

consensus_391#0      ATCAACAAGACAGAGCCCATCTGGAGGCGCTGGGGGAGCAGTAGCTCGCCTGCAAGTGGC 360
consensus_391#1      ATCAACAAGACAGAGCCCATCTGGAGGCGCTGGGGGAGCAGTAGCTCGCCTGCAAGTGGC 208
                     ************************************************************

consensus_391#0      TTCCATCAGGTTCAGCAAAGCATCTTCTTCAGCACCAGCAGCTGCCTCCCTTATGGCGGT 420
consensus_391#1      TTCCATCAGGTTCAGCAAAGCATCTTCTTCAGCACCAGCAGCTGCCTCCCTTATGGCGGT 268
                     ************************************************************

consensus_391#0      CGCAACAAGAACCCTAACCATCTTGCGCAGAAACCTGTTTGCGACTAGCTCAATGCATAT 480
consensus_391#1      CGCAACAAGAACCCTAACCATCTTGCGCAAAAACCTGTTTGCGACTAGCTCAATGCATAT 328
                     ***************************** ******************************

consensus_391#0      GGCCCTGGTGGTGCCTTCTTCACAATTCTCATCAGCAGTGTGTAGTTTGGCCACTGCAGC 540
consensus_391#1      GGCCCTGGGGGGGCCTTCTTCACAATTCTG--CAAAAATTGGGAAAACGG--AATGGAAC 384
                     ******** ** *****************   **  * *  * *    **  * ** * *

consensus_391#0      TCGAGAATGGAACATGAAACACTCTGT----AGGTGGACCAACACTTCGTGAAGCTTGTG 596
consensus_391#1      ATGGTATTACCAGTTGAAATGATATATGTGCATGCAAAATGATAATTGAAAAAAAAAAAA 444
                       *  * *   *  *****   * * *    * *   *   * * **    **       

consensus_391#0      TATCACGTGCAAAC-ATC--TTGTAAGATAGTGATTTTCC-TTCCAGTTGTCTA-ATGAT 651
consensus_391#1      CCAGATAAGGGAGTTATCAATTGCATAGCCATGATGCTAAATTTTATGAGTCCACATAAT 504
                         *   *  *   ***  *** *      ****  *   **  *   *** * ** **

consensus_391#0      TTTGTCAACCTTACCCACATCANAGCTTTGAGGTTTTATGTT------------------ 693
consensus_391#1      ATATTTAGTTTTG---ATATCAGCACCTCAAAACTATATAATCCACAATTGCATACACGT 561
                      *  * *   **    * ****   * *  *   * ***  *                  

consensus_391#0      ------------------------------------------------------------
consensus_391#1      CATAATGCCATACTCAAGCTATGCCAATGTCCAGCAACTAAGGTTAAGGTTACAAACGCG 621
                                                                                 

consensus_391#0      ------------------------------------------------------------
consensus_391#1      ATACCACAAAATAATACTGTTACTTTTATGTAGAGATTAGCAGTACTAGAATGGAAGCAC 681
                                                                                 

consensus_391#0      ------
consensus_391#1      TGGGAA 687