cluster # 3911

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Oryza sativa
cluster # 3911 cluster # 3911 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3911#0 length = 580 sequences # 2

consensus_3911#1 length = 409 sequences # 1

consensusID : consensus_3911#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 580
fasta sequence

                              [CGGATTCTTCTCTCCTCCTCTCATGGTCTCTTGTGGCACATGGACACTGCTCGTCCAGTCCATCCCTTGCGTGTGCATGGCGAGAGCATCCGCGGCCTCCTCCTCCTCCTCCTCCTGTTCGTCGTGCAGTGCTCGCTGCTCAGTTGCTGTTTGGCGCATGCCGCCGCCGCCGCCGACGCCGTCGACAGGGACGACCCCGTTGTGACGGCGACGGCCGGCCGGGGCCGGCGGTTTCTCCCATCGCCGGCGCTGCCANGCTNACTCCGTGCAGG-TGAATGTGGCGGCTCATCCGTGGAGCAAGGAGAGGAGGAGGAGCAGAAGAAGAAGAAGAAGAAGAGCCGCCACGTTGATGGCCGTGAGCAAGCATCAGGTGCCCACCGGCGCCAACCCGGACTCCAATTAGCTAGGCAGTAATTAATTAGCTAATTAACCTAGTAAAGAACACTGCGAGAGCTCTATTTGCCCCTGCCATGCATTCTGTGAGATGTGATGAGATGTCATGAGCGATCTACCGTGTATGTATGTATGTTTTAGCTTGTTGAGCCTAATATGTTATTTTCGTCTTATTTAAAAAAAAAAA]

[+] EMBL AU076191             [CGGATTCTTCTCTCCTCCTCTCATGGTCTCTTGTGGCACATGGACACTGCTCGTCCAGTCCATCCCTTGCGTGTGCATGGCGAGAGCATCCGCGGCCTCCTCCTCCTCCTCCTCCTGTTCGTCGTGCAGTGCTCGCTGCTCAGTTGCTGTTTGGCGCATGCCGCCGCCGCCGCCGACGCCGTCGACAGGGACGACCCCGTTGTGACGGCGACGGCCGGCCGGGGCCGGCGGTTTCTCCCATCGCCGGCGCTGCCANGCTNACTCCGTGCAGG TGAATGTGGCGGCTCATCCGTGGAGCAAGGAGAGGAGGAGGAGCAGAAGAAGAAGAAGAAGAAGAGCCGCCACGTTGATGGCCGTGAGCAAGCATCAGGTGCCCACCGGCGCCAACCCGGACTCCAATTAGCTAGGCAGTAATTAATTAGCTAATTAACCTAGTAAAGAACACTGCGAGAGCTCTATTTGCCCCTGCCATGCATTCTGTGAGATGTGATGAGATGTCATGAGCGATCTACCGTGTATGTATGTATGTTTTAGCTTGTTGAGCCTAATATGTTATTTTCGTCTTATTTAAAAAAAAAAA]
[+] EMBL AU076190             [            TCCTCCTCTCATGGTCTCTTGTGGCACATGGACACTGCTCGTCCAGTCCATCCCTTGCGTGTGCATGGCGAGAG ATCCGCGGCCTCCTCCTCCTCCTCCTCCTGTTCGTCGTGCAGTGCTCGCTGCTCAGTTGCTGTTTGGCGCATG CGCCGCCGCCGCCGACGCCGTCGACAGGGACGACCCCGTTGTGACGGCGACGG CGGCCGGGGC  GCGGTTTCTCCCATCGCCGGCG TGCAGTGC  ACTCCGT NAGGTTGAATGTGGCGGCTCATCCGTGGAGCAAGGANAGGAGGA GAGCAG AGAAGA                                                                                                                                                                                                                                                               ]




>consensus_3911#0
CGGATTCTTCTCTCCTCCTCTCATGGTCTCTTGTGGCACATGGACACTGCTCGTCCAGTC
CATCCCTTGCGTGTGCATGGCGAGAGCATCCGCGGCCTCCTCCTCCTCCTCCTCCTGTTC
GTCGTGCAGTGCTCGCTGCTCAGTTGCTGTTTGGCGCATGCCGCCGCCGCCGCCGACGCC
GTCGACAGGGACGACCCCGTTGTGACGGCGACGGCCGGCCGGGGCCGGCGGTTTCTCCCA
TCGCCGGCGCTGCCANGCTNACTCCGTGCAGGTGAATGTGGCGGCTCATCCGTGGAGCAA
GGAGAGGAGGAGGAGCAGAAGAAGAAGAAGAAGAAGAGCCGCCACGTTGATGGCCGTGAG
CAAGCATCAGGTGCCCACCGGCGCCAACCCGGACTCCAATTAGCTAGGCAGTAATTAATT
AGCTAATTAACCTAGTAAAGAACACTGCGAGAGCTCTATTTGCCCCTGCCATGCATTCTG
TGAGATGTGATGAGATGTCATGAGCGATCTACCGTGTATGTATGTATGTTTTAGCTTGTT
GAGCCTAATATGTTATTTTCGTCTTATTTAAAAAAAAAAA

consensusID : consensus_3911#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 409
fasta sequence

                              [GACGACCCCGTTGTGACGGCGACGTCCGCCAGGGCCGGGGGTTTCTCCCATCGCCGGCAGTGCAGCTGCACTCCGTGCAGGGGAATGTGCAGGCTCATCCGTGGAGCAAGGAGAGGAGGAGGACAGAAGAAGAAGAAGAGAGACCGCCACGTTGATGGCCGTGAGACAAGCATCAGGTGCCGACCGGCGCCAAACCCGGACTCCAAGTTAGCTAGCAAGTAATTAATTAGCTAATTAACACTAGTAAAGAACACTGCGAGAGCTCTATTTGCACCACTGCCATGCATTGTGTGAGATGTGATGAGATGTCATGAGCGATCTACCGTGTATGTATGTATGTTTTAGCTTGCTTGAGCCTAATATGTTATTTTCGTCTTATTTAATTGTATTAGTGTCATGATTTCAAAAA]

[+] EMBL BI796997             [GACGACCCCGTTGTGACGGCGACGTCCGCCAGGGCCGGGGGTTTCTCCCATCGCCGGCAGTGCAGCTGCACTCCGTGCAGGGGAATGTGCAGGCTCATCCGTGGAGCAAGGAGAGGAGGAGGACAGAAGAAGAAGAAGAGAGACCGCCACGTTGATGGCCGTGAGACAAGCATCAGGTGCCGACCGGCGCCAAACCCGGACTCCAAGTTAGCTAGCAAGTAATTAATTAGCTAATTAACACTAGTAAAGAACACTGCGAGAGCTCTATTTGCACCACTGCCATGCATTGTGTGAGATGTGATGAGATGTCATGAGCGATCTACCGTGTATGTATGTATGTTTTAGCTTGCTTGAGCCTAATATGTTATTTTCGTCTTATTTAATTGTATTAGTGTCATGATTTCAAAAA]




>consensus_3911#1
GACGACCCCGTTGTGACGGCGACGTCCGCCAGGGCCGGGGGTTTCTCCCATCGCCGGCAG
TGCAGCTGCACTCCGTGCAGGGGAATGTGCAGGCTCATCCGTGGAGCAAGGAGAGGAGGA
GGACAGAAGAAGAAGAAGAGAGACCGCCACGTTGATGGCCGTGAGACAAGCATCAGGTGC
CGACCGGCGCCAAACCCGGACTCCAAGTTAGCTAGCAAGTAATTAATTAGCTAATTAACA
CTAGTAAAGAACACTGCGAGAGCTCTATTTGCACCACTGCCATGCATTGTGTGAGATGTG
ATGAGATGTCATGAGCGATCTACCGTGTATGTATGTATGTTTTAGCTTGCTTGAGCCTAA
TATGTTATTTTCGTCTTATTTAATTGTATTAGTGTCATGATTTCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3911#0      CGGATTCTTCTCTCCTCCTCTCATGGTCTCTTGTGGCACATGGACACTGCTCGTCCAGTC 60
consensus_3911#1      ------------------------------------------------------------
                                                                                  

consensus_3911#0      CATCCCTTGCGTGTGCATGGCGAGAGCATCCGCGGCCTCCTCCTCCTCCTCCTCCTGTTC 120
consensus_3911#1      ------------------------------------------------------------
                                                                                  

consensus_3911#0      GTCGTGCAGTGCTCGCTGCTCAGTTGCTGTTTGGCGCATGCCGCCGCCGCCGCCGACGCC 180
consensus_3911#1      ------------------------------------------------------------
                                                                                  

consensus_3911#0      GTCGACAGGGACGACCCCGTTGTGACGGCGACGGCCGGCCGGGGCCGGCGGTTTCTCCCA 240
consensus_3911#1      ---------GACGACCCCGTTGTGACGGCGACGTCCG-CCAGGGCCGGGGGTTTCTCCCA 50
                               ************************ *** ** ******* ***********

consensus_3911#0      TCGCCGGCGCTGCCANGCTNACTCCGTGCAGGTGAATGTGGCGGCTCATCCGTGGAGCAA 300
consensus_3911#1      TCGCCGGCAGTGC-AGCTGCACTCCGTGCAGGGGAATGTGCAGGCTCATCCGTGGAGCAA 109
                      ********  *** *     ************ *******  ******************

consensus_3911#0      GGAGAGGAGGAGGAGCAGAAGAAGAAGAAGAAGAAGAGCCGCCACGTTGATGGCCGTGAG 360
consensus_3911#1      GGAGAGGAGGAGGAC----AGAAGAAGAAGAAGAGAGACCGCCACGTTGATGGCCGTGAG 165
                      **************     ***************    **********************

consensus_3911#0      -CAAGCATCAGGTGCCCACCGGCGCCAA-CCCGGACTCCAA-TTAGCTAGGCAGTAATTA 417
consensus_3911#1      ACAAGCATCAGGTGCCGACCGGCGCCAAACCCGGACTCCAAGTTAGCTAGCAAGTAATTA 225
                       *************** *********** ************ ********  ********

consensus_3911#0      ATTAGCTAATTAAC-CTAGTAAAGAACACTGCGAGAGCTCTATTTGCCCC--TGCCATGC 474
consensus_3911#1      ATTAGCTAATTAACACTAGTAAAGAACACTGCGAGAGCTCTATTTGCACCACTGCCATGC 285
                      ************** ******************************** **  ********

consensus_3911#0      ATTCTGTGAGATGTGATGAGATGTCATGAGCGATCTACCGTGTATGTATGTATGTTTTAG 534
consensus_3911#1      ATTGTGTGAGATGTGATGAGATGTCATGAGCGATCTACCGTGTATGTATGTATGTTTTAG 345
                      *** ********************************************************

consensus_3911#0      CTTG-TTGAGCCTAATATGTTATTTTCGTCTTATTTAAAAAAAAAAA------------- 580
consensus_3911#1      CTTGCTTGAGCCTAATATGTTATTTTCGTCTTATTTAATTGTATTAGTGTCATGATTTCA 405
                      **** *********************************    *  *              

consensus_3911#0      ----
consensus_3911#1      AAAA 409