These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1715 fasta sequence [AAGCTGCTCTGATCAGAAATCCCAATGGCAATGGAGAAGAGCCCTCCTCCGGCGCCGCACTTCCTCTTCGTGGTGAGCGGGATACAGGGCCACATCAACCCGGCGCGCCGCCTCGCCGCGCGCCTGATGGCGTCGGCGCCGGCCGCGCGCGTCACCTTCTCCACCGCCGTCTCCGCGCACCGCCTCATGTTCCCGTCCCTGCCGTCCCCGGCCGGCGAGGACGTCGACGACACCGGCGTCGCGTACGTCCCGCACTCCGACGGCTACGACGACGGGTACAAGCCCGGGGTGCACGCGAGGGACGACTACATGGCGCGCACCCGCGCCGCGGGCACCGAGTCGCTCTCCGCCATCGTCGCGGCTCTCGCGGCGAGGGGGCGCCCGGTGACGTGCATCGTGTACACGTTCCTCGTGGTTTGGGCCCCCGCCGTGGCGCGCGCGCTGGGGATCCCCTCGGCGATCTACTGGATCCAGCCGGCGGCGGCGTTCGCCGTGTACTACCACTACTTCCATGGCCATGGCGAGGCCCTCGCCTCCTGCGCGAACGACCCTGCCCGCGGCGCCGTCGTGCGCCTCCCCGGGATGCCGTTCCTCAGGTCCGACGAGCTCCCCTCCGCCGTGTCCATCGTCTCGCCGGAGCACAAGCACTACCTGCTGCTCGCCATGCTGCGCGACCTGTTCGAGGATCTCGACGAGCTCAAGCCCAGGGTGCTGGTGAACACGTTCGACGCGCTGGAGCCCGACGCGCTCCGCGCCGTGCCCGATCTGGAGGTCGTCGCCGTCGGGCCGGTGGTGCCCGACGGCGAAGCGTCTCTGTCGAGCTCGAGCACGGACATGTTCCGGCGAGACGACGCGAGCGCGTGCGTGGATTGGCTGGACACGAAGCCGGCGCGCTCCGTGGTGTACGTCTCGTTCGGGACCCTCCTGTCGATGAGCAAGCGGCAGGAGGAGGAGATGAGGCGCGGCCTTGAGGCCACCGGCCGGCCGTACCTGTGGGTGGCGCGCCAGGGCGCCGTCGATGGCGGCGCGACCTTGGACAGCGCACCCACCCCCGCCGCCGATGCCGGCGGCGGCGGCGGCGAAGGGGACGCGCAAGGGATGGTGGTGGGGTGGTGCGACCAGATGAAGGTGCTCTCGCACCCGGCTGTGGGCTGCTTCGTGACGCACTGCGGGTGGAACTCGGCGCTGGAGAGCATCACCCGCGGCGTGCCGATGGTGGCCGTGCCGCAGTGGACGGACCAGCCGACGGTGGCGTGGCTGGTCGAGGCGCGCATGGGCGCCGGCGTGCGCGCGCGGCTGGACGGCGAGGGCGTGGTCGAGCGCGGCGAGCTGCAGCGGTGCGTGGAGCTCGCCATGGCGGGCGGCGGAGACGGCGGTGTCCGGGCACGGGCGGAGCGATGGAGGGAGCGCGCCGCGGAGGCGGTCGCGGCCGGCGGGTCGTCGGAGAGGAATCTCCGGGCGTTCGCGTCCGGGGCCGTGACGCAGGCGGTGTGCTCGAGCAGGTGATTCCGCCGGCGGCCGCCGGCGATGGCGAACTCAACGGCTGGATTGTTGTTGTTTTTTTATATTCCCAGATAATAGCTTTGTCATTTGGTGTGGCGTTGACGCAATCAGTATGTTGATTAGTCGACGTAACAGCAAATTTAATTGGAGATCTCATTAAATTTTAGATGTTGCCATATCATCTACAAACAGTTCAATAAAGGGAGCAAAAT] [+] EMBL AK060513 [AAGCTGCTCTGATCAGAAATCCCAATGGCAATGGAGAAGAGCCCTCCTCCGGCGCCGCACTTCCTCTTCGTGGTGAGCGGGATACAGGGCCACATCAACCCGGCGCGCCGCCTCGCCGCGCGCCTGATGGCGTCGGCGCCGGCCGCGCGCGTCACCTTCTCCACCGCCGTCTCCGCGCACCGCCTCATGTTCCCGTCCCTGCCGTCCCCGGCCGGCGAGGACGTCGACGACACCGGCGTCGCGTACGTCCCGCACTCCGACGGCTACGACGACGGGTACAAGCCCGGGGTGCACGCGAGGGACGACTACATGGCGCGCACCCGCGCCGCGGGCACCGAGTCGCTCTCCGCCATCGTCGCGGCTCTCGCGGCGAGGGGGCGCCCGGTGACGTGCATCGTGTACACGTTCCTCGTGGTTTGGGCCCCCGCCGTGGCGCGCGCGCTGGGGATCCCCTCGGCGATCTACTGGATCCAGCCGGCGGCGGCGTTCGCCGTGTACTACCACTACTTCCATGGCCATGGCGAGGCCCTCGCCTCCTGCGCGAACGACCCTGCCCGCGGCGCCGTCGTGCGCCTCCCCGGGATGCCGTTCCTCAGGTCCGACGAGCTCCCCTCCGCCGTGTCCATCGTCTCGCCGGAGCACAAGCACTACCTGCTGCTCGCCATGCTGCGCGACCTGTTCGAGGATCTCGACGAGCTCAAGCCCAGGGTGCTGGTGAACACGTTCGACGCGCTGGAGCCCGACGCGCTCCGCGCCGTGCCCGATCTGGAGGTCGTCGCCGTCGGGCCGGTGGTGCCCGACGGCGAAGCGTCTCTGTCGAGCTCGAGCACGGACATGTTCCGGCGAGACGACGCGAGCGCGTGCGTGGATTGGCTGGACACGAAGCCGGCGCGCTCCGTGGTGTACGTCTCGTTCGGGACCCTCCTGTCGATGAGCAAGCGGCAGGAGGAGGAGATGAGGCGCGGCCTTGAGGCCACCGGCCGGCCGTACCTGTGGGTGGCGCGCCAGGGCGCCGTCGATGGCGGCGCGACCTTGGACAGCGCACCCACCCCCGCCGCCGATGCCGGCGGCGGCGGCGGCGAAGGGGACGCGCAAGGGATGGTGGTGGGGTGGTGCGACCAGATGAAGGTGCTCTCGCACCCGGCTGTGGGCTGCTTCGTGACGCACTGCGGGTGGAACTCGGCGCTGGAGAGCATCACCCGCGGCGTGCCGATGGTGGCCGTGCCGCAGTGGACGGACCAGCCGACGGTGGCGTGGCTGGTCGAGGCGCGCATGGGCGCCGGCGTGCGCGCGCGGCTGGACGGCGAGGGCGTGGTCGAGCGCGGCGAGCTGCAGCGGTGCGTGGAGCTCGCCATGGCGGGCGGCGGAGACGGCGGTGTCCGGGCACGGGCGGAGCGATGGAGGGAGCGCGCCGCGGAGGCGGTCGCGGCCGGCGGGTCGTCGGAGAGGAATCTCCGGGCGTTCGCGTCCGGGGCCGTGACGCAGGCGGTGTGCTCGAGCAGGTGATTCCGCCGGCGGCCGCCGGCGATGGCGAACTCAACGGCTGGATTGTTGTTGTTTTTTTATATTCCCAGATAATAGCTTTGTCATTTGGTGTGGCGTTGACGCAATCAGTATGTTGATTAGTCGACGTAACAGCAAATTTAATTGGAGATCTCATTAAATTTTAGATGTTGCCATATCATCTACAAACAGTTCAATAAAGGGAGCAAAAT] [+] EMBL CB668003 [ ATGGCAATGGAGAAGAGCCCTCCTCCGGCGCCGCACTTCCTCTTCGTGGTGAGCGGGATACAGGGCCACATCAACCCGGCGCGCCGCCTCGCCGCGCGCCTGATGGCGTCGGCGCCGGCCGCGCGCGTCACCTTCTCCACCGCCGTCTCCGCGCACCGCCTCATGTTCCCGTCCCTGCCGTCCCCGGCCGGCGAGGACGTCGACGACACCGGCGTCGCGTACGTCCCGCACTCCGACGGCTACGACGACGGGTACAAGCCCGGGGTGCACGCGAGGGACGACTACATGGCGCGCACCCGCGCCGCGGGCACCGAGTCGCTCTCCGCCATCGTCGCGGCTCTCGCGGCGAGGGGGCGCCCGGTGACGTGCATCGTGTACACGTTCCTCGTGGTTTGGGCCCCCGCCGTGGCGCGCGCGCTGGGGATCCCCTCGGCGATCTACTGGATCCAGCCGGCGGCGGCGTTCGCCGTGTACTACCACTACTTCCATGGCCATGGCGAGGCCCTCGCCTCCTGCGCGAACGACCCTGCCCGCGGCGCCGTCGTGCGCCTCCCCGGGATGCCGTTCCTCAGGTCCGACGAGCTCCCCTCCGCCGTGTCCATCGTCTCGCCGGAGCACAAGCACTACCTGCTGCTCGCCATGCTGCGCGACCTGTTCGAGGATCTCGACGAGCTCAAGCCCAGGGTG ] consensusID : consensus_3913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [GCGGCGGCGGCGGCGAAGGGGACGCGCAAGGGATGGTGGTGGAGTGGTGCGACCAGATGAAGGTGCTCTCGCACCCGGCTGTGGGCTGCTTCGTGACGCACTGCGGGTGGAACTCGGCGCTGGAGAGCATCACCCGCGGCGTGCCGATGGTGGCCGTGCCGCAGTGGACGGACCAGCCGACGGTGGCGTGGCTGGTCGAGGCGCGCATGGGCGCCGGCGTGCGCGCGCGGCTGGACGGCGAGGGCGTGGTCGAGCGCGGCGAGCTGCAGCGGTGCGTGGAGCTCGCCATGGCGGGCGGCGGAGACGGCGGTGTCCGGGCACGGGCGGAGCGATGGAGGGAGCGCGCCGCGGAGGCGGTCGCGGCCGGCGGGTTGTCGGAGAGGAATCTCCGGGCGTTCGCGTCCGGGGCCGTGACGCAGGCGGTGTGCTCGAGCAGGTGATTCCACCGGCGGCCGCCGGCGATGGCGAACTCAACGGGTGGATTATTGTGGTTTTTTTATATTCCCAGATAATACCTTTTTCATTTGGTGTGGCGTGGACGCAATCAGTATGTTGATTAGGTTGTTGTACCAGCACATTTAATTGTGAGATCTCATTAAATTCTAGCAAAAAAGGGGAATACAATCTTGAGG] [-] EMBL CB668004 [GCGGCGGCGGCGGCGAAGGGGACGCGCAAGGGATGGTGGTGGAGTGGTGCGACCAGATGAAGGTGCTCTCGCACCCGGCTGTGGGCTGCTTCGTGACGCACTGCGGGTGGAACTCGGCGCTGGAGAGCATCACCCGCGGCGTGCCGATGGTGGCCGTGCCGCAGTGGACGGACCAGCCGACGGTGGCGTGGCTGGTCGAGGCGCGCATGGGCGCCGGCGTGCGCGCGCGGCTGGACGGCGAGGGCGTGGTCGAGCGCGGCGAGCTGCAGCGGTGCGTGGAGCTCGCCATGGCGGGCGGCGGAGACGGCGGTGTCCGGGCACGGGCGGAGCGATGGAGGGAGCGCGCCGCGGAGGCGGTCGCGGCCGGCGGGTTGTCGGAGAGGAATCTCCGGGCGTTCGCGTCCGGGGCCGTGACGCAGGCGGTGTGCTCGAGCAGGTGATTCCACCGGCGGCCGCCGGCGATGGCGAACTCAACGGGTGGATTATTGTGGTTTTTTTATATTCCCAGATAATACCTTTTTCATTTGGTGTGGCGTGGACGCAATCAGTATGTTGATTAGGTTGTTGTACCAGCACATTTAATTGTGAGATCTCATTAAATTCTAGCAAAAAAGGGGAATACAATCTTGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3913#0 AAGCTGCTCTGATCAGAAATCCCAATGGCAATGGAGAAGAGCCCTCCTCCGGCGCCGCAC 60 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 TTCCTCTTCGTGGTGAGCGGGATACAGGGCCACATCAACCCGGCGCGCCGCCTCGCCGCG 120 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 CGCCTGATGGCGTCGGCGCCGGCCGCGCGCGTCACCTTCTCCACCGCCGTCTCCGCGCAC 180 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 CGCCTCATGTTCCCGTCCCTGCCGTCCCCGGCCGGCGAGGACGTCGACGACACCGGCGTC 240 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 GCGTACGTCCCGCACTCCGACGGCTACGACGACGGGTACAAGCCCGGGGTGCACGCGAGG 300 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 GACGACTACATGGCGCGCACCCGCGCCGCGGGCACCGAGTCGCTCTCCGCCATCGTCGCG 360 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 GCTCTCGCGGCGAGGGGGCGCCCGGTGACGTGCATCGTGTACACGTTCCTCGTGGTTTGG 420 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 GCCCCCGCCGTGGCGCGCGCGCTGGGGATCCCCTCGGCGATCTACTGGATCCAGCCGGCG 480 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 GCGGCGTTCGCCGTGTACTACCACTACTTCCATGGCCATGGCGAGGCCCTCGCCTCCTGC 540 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 GCGAACGACCCTGCCCGCGGCGCCGTCGTGCGCCTCCCCGGGATGCCGTTCCTCAGGTCC 600 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 GACGAGCTCCCCTCCGCCGTGTCCATCGTCTCGCCGGAGCACAAGCACTACCTGCTGCTC 660 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 GCCATGCTGCGCGACCTGTTCGAGGATCTCGACGAGCTCAAGCCCAGGGTGCTGGTGAAC 720 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 ACGTTCGACGCGCTGGAGCCCGACGCGCTCCGCGCCGTGCCCGATCTGGAGGTCGTCGCC 780 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 GTCGGGCCGGTGGTGCCCGACGGCGAAGCGTCTCTGTCGAGCTCGAGCACGGACATGTTC 840 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 CGGCGAGACGACGCGAGCGCGTGCGTGGATTGGCTGGACACGAAGCCGGCGCGCTCCGTG 900 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 GTGTACGTCTCGTTCGGGACCCTCCTGTCGATGAGCAAGCGGCAGGAGGAGGAGATGAGG 960 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 CGCGGCCTTGAGGCCACCGGCCGGCCGTACCTGTGGGTGGCGCGCCAGGGCGCCGTCGAT 1020 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 GGCGGCGCGACCTTGGACAGCGCACCCACCCCCGCCGCCGATGCCGGCGGCGGCGGCGGC 1080 consensus_3913#1 ----------------------------------------------GCGGCGGCGGCGGC 14 ************** consensus_3913#0 GAAGGGGACGCGCAAGGGATGGTGGTGGGGTGGTGCGACCAGATGAAGGTGCTCTCGCAC 1140 consensus_3913#1 GAAGGGGACGCGCAAGGGATGGTGGTGGAGTGGTGCGACCAGATGAAGGTGCTCTCGCAC 74 **************************** ******************************* consensus_3913#0 CCGGCTGTGGGCTGCTTCGTGACGCACTGCGGGTGGAACTCGGCGCTGGAGAGCATCACC 1200 consensus_3913#1 CCGGCTGTGGGCTGCTTCGTGACGCACTGCGGGTGGAACTCGGCGCTGGAGAGCATCACC 134 ************************************************************ consensus_3913#0 CGCGGCGTGCCGATGGTGGCCGTGCCGCAGTGGACGGACCAGCCGACGGTGGCGTGGCTG 1260 consensus_3913#1 CGCGGCGTGCCGATGGTGGCCGTGCCGCAGTGGACGGACCAGCCGACGGTGGCGTGGCTG 194 ************************************************************ consensus_3913#0 GTCGAGGCGCGCATGGGCGCCGGCGTGCGCGCGCGGCTGGACGGCGAGGGCGTGGTCGAG 1320 consensus_3913#1 GTCGAGGCGCGCATGGGCGCCGGCGTGCGCGCGCGGCTGGACGGCGAGGGCGTGGTCGAG 254 ************************************************************ consensus_3913#0 CGCGGCGAGCTGCAGCGGTGCGTGGAGCTCGCCATGGCGGGCGGCGGAGACGGCGGTGTC 1380 consensus_3913#1 CGCGGCGAGCTGCAGCGGTGCGTGGAGCTCGCCATGGCGGGCGGCGGAGACGGCGGTGTC 314 ************************************************************ consensus_3913#0 CGGGCACGGGCGGAGCGATGGAGGGAGCGCGCCGCGGAGGCGGTCGCGGCCGGCGGGTCG 1440 consensus_3913#1 CGGGCACGGGCGGAGCGATGGAGGGAGCGCGCCGCGGAGGCGGTCGCGGCCGGCGGGTTG 374 ********************************************************** * consensus_3913#0 TCGGAGAGGAATCTCCGGGCGTTCGCGTCCGGGGCCGTGACGCAGGCGGTGTGCTCGAGC 1500 consensus_3913#1 TCGGAGAGGAATCTCCGGGCGTTCGCGTCCGGGGCCGTGACGCAGGCGGTGTGCTCGAGC 434 ************************************************************ consensus_3913#0 AGGTGATTCCGCCGGCGGCCGCCGGCGATGGCGAACTCAACGGCTGGATTGTTGTTGTTT 1560 consensus_3913#1 AGGTGATTCCACCGGCGGCCGCCGGCGATGGCGAACTCAACGGGTGGATTATTGTGGTTT 494 ********** ******************************** ****** **** **** consensus_3913#0 TTTTATATTCCCAGATAATAGCTTTGTCATTTGGTGTGGCGTTGACGCAATCAGTATGTT 1620 consensus_3913#1 TTTTATATTCCCAGATAATACCTTTTTCATTTGGTGTGGCGTGGACGCAATCAGTATGTT 554 ******************** **** **************** ***************** consensus_3913#0 GATTAG-TCGACGTAACAGCAAATTTAATTG-GAGATCTCATTAAATTTTAG----ATGT 1674 consensus_3913#1 GATTAGGTTGTTGTACCAGCACATTTAATTGTGAGATCTCATTAAATTCTAGCAAAAAAG 614 ****** * * *** ***** ********* **************** *** * consensus_3913#0 TGCCATATCATCTACAAACAGTTCAATAAAGGGAGCAAAAT 1715 consensus_3913#1 GGGAATACAATCTTGAGG----------------------- 632 * *** **** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||