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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1715 fasta sequence
[AAGCTGCTCTGATCAGAAATCCCAATGGCAATGGAGAAGAGCCCTCCTCCGGCGCCGCACTTCCTCTTCGTGGTGAGCGGGATACAGGGCCACATCAACCCGGCGCGCCGCCTCGCCGCGCGCCTGATGGCGTCGGCGCCGGCCGCGCGCGTCACCTTCTCCACCGCCGTCTCCGCGCACCGCCTCATGTTCCCGTCCCTGCCGTCCCCGGCCGGCGAGGACGTCGACGACACCGGCGTCGCGTACGTCCCGCACTCCGACGGCTACGACGACGGGTACAAGCCCGGGGTGCACGCGAGGGACGACTACATGGCGCGCACCCGCGCCGCGGGCACCGAGTCGCTCTCCGCCATCGTCGCGGCTCTCGCGGCGAGGGGGCGCCCGGTGACGTGCATCGTGTACACGTTCCTCGTGGTTTGGGCCCCCGCCGTGGCGCGCGCGCTGGGGATCCCCTCGGCGATCTACTGGATCCAGCCGGCGGCGGCGTTCGCCGTGTACTACCACTACTTCCATGGCCATGGCGAGGCCCTCGCCTCCTGCGCGAACGACCCTGCCCGCGGCGCCGTCGTGCGCCTCCCCGGGATGCCGTTCCTCAGGTCCGACGAGCTCCCCTCCGCCGTGTCCATCGTCTCGCCGGAGCACAAGCACTACCTGCTGCTCGCCATGCTGCGCGACCTGTTCGAGGATCTCGACGAGCTCAAGCCCAGGGTGCTGGTGAACACGTTCGACGCGCTGGAGCCCGACGCGCTCCGCGCCGTGCCCGATCTGGAGGTCGTCGCCGTCGGGCCGGTGGTGCCCGACGGCGAAGCGTCTCTGTCGAGCTCGAGCACGGACATGTTCCGGCGAGACGACGCGAGCGCGTGCGTGGATTGGCTGGACACGAAGCCGGCGCGCTCCGTGGTGTACGTCTCGTTCGGGACCCTCCTGTCGATGAGCAAGCGGCAGGAGGAGGAGATGAGGCGCGGCCTTGAGGCCACCGGCCGGCCGTACCTGTGGGTGGCGCGCCAGGGCGCCGTCGATGGCGGCGCGACCTTGGACAGCGCACCCACCCCCGCCGCCGATGCCGGCGGCGGCGGCGGCGAAGGGGACGCGCAAGGGATGGTGGTGGGGTGGTGCGACCAGATGAAGGTGCTCTCGCACCCGGCTGTGGGCTGCTTCGTGACGCACTGCGGGTGGAACTCGGCGCTGGAGAGCATCACCCGCGGCGTGCCGATGGTGGCCGTGCCGCAGTGGACGGACCAGCCGACGGTGGCGTGGCTGGTCGAGGCGCGCATGGGCGCCGGCGTGCGCGCGCGGCTGGACGGCGAGGGCGTGGTCGAGCGCGGCGAGCTGCAGCGGTGCGTGGAGCTCGCCATGGCGGGCGGCGGAGACGGCGGTGTCCGGGCACGGGCGGAGCGATGGAGGGAGCGCGCCGCGGAGGCGGTCGCGGCCGGCGGGTCGTCGGAGAGGAATCTCCGGGCGTTCGCGTCCGGGGCCGTGACGCAGGCGGTGTGCTCGAGCAGGTGATTCCGCCGGCGGCCGCCGGCGATGGCGAACTCAACGGCTGGATTGTTGTTGTTTTTTTATATTCCCAGATAATAGCTTTGTCATTTGGTGTGGCGTTGACGCAATCAGTATGTTGATTAGTCGACGTAACAGCAAATTTAATTGGAGATCTCATTAAATTTTAGATGTTGCCATATCATCTACAAACAGTTCAATAAAGGGAGCAAAAT]
[+] EMBL AK060513 [AAGCTGCTCTGATCAGAAATCCCAATGGCAATGGAGAAGAGCCCTCCTCCGGCGCCGCACTTCCTCTTCGTGGTGAGCGGGATACAGGGCCACATCAACCCGGCGCGCCGCCTCGCCGCGCGCCTGATGGCGTCGGCGCCGGCCGCGCGCGTCACCTTCTCCACCGCCGTCTCCGCGCACCGCCTCATGTTCCCGTCCCTGCCGTCCCCGGCCGGCGAGGACGTCGACGACACCGGCGTCGCGTACGTCCCGCACTCCGACGGCTACGACGACGGGTACAAGCCCGGGGTGCACGCGAGGGACGACTACATGGCGCGCACCCGCGCCGCGGGCACCGAGTCGCTCTCCGCCATCGTCGCGGCTCTCGCGGCGAGGGGGCGCCCGGTGACGTGCATCGTGTACACGTTCCTCGTGGTTTGGGCCCCCGCCGTGGCGCGCGCGCTGGGGATCCCCTCGGCGATCTACTGGATCCAGCCGGCGGCGGCGTTCGCCGTGTACTACCACTACTTCCATGGCCATGGCGAGGCCCTCGCCTCCTGCGCGAACGACCCTGCCCGCGGCGCCGTCGTGCGCCTCCCCGGGATGCCGTTCCTCAGGTCCGACGAGCTCCCCTCCGCCGTGTCCATCGTCTCGCCGGAGCACAAGCACTACCTGCTGCTCGCCATGCTGCGCGACCTGTTCGAGGATCTCGACGAGCTCAAGCCCAGGGTGCTGGTGAACACGTTCGACGCGCTGGAGCCCGACGCGCTCCGCGCCGTGCCCGATCTGGAGGTCGTCGCCGTCGGGCCGGTGGTGCCCGACGGCGAAGCGTCTCTGTCGAGCTCGAGCACGGACATGTTCCGGCGAGACGACGCGAGCGCGTGCGTGGATTGGCTGGACACGAAGCCGGCGCGCTCCGTGGTGTACGTCTCGTTCGGGACCCTCCTGTCGATGAGCAAGCGGCAGGAGGAGGAGATGAGGCGCGGCCTTGAGGCCACCGGCCGGCCGTACCTGTGGGTGGCGCGCCAGGGCGCCGTCGATGGCGGCGCGACCTTGGACAGCGCACCCACCCCCGCCGCCGATGCCGGCGGCGGCGGCGGCGAAGGGGACGCGCAAGGGATGGTGGTGGGGTGGTGCGACCAGATGAAGGTGCTCTCGCACCCGGCTGTGGGCTGCTTCGTGACGCACTGCGGGTGGAACTCGGCGCTGGAGAGCATCACCCGCGGCGTGCCGATGGTGGCCGTGCCGCAGTGGACGGACCAGCCGACGGTGGCGTGGCTGGTCGAGGCGCGCATGGGCGCCGGCGTGCGCGCGCGGCTGGACGGCGAGGGCGTGGTCGAGCGCGGCGAGCTGCAGCGGTGCGTGGAGCTCGCCATGGCGGGCGGCGGAGACGGCGGTGTCCGGGCACGGGCGGAGCGATGGAGGGAGCGCGCCGCGGAGGCGGTCGCGGCCGGCGGGTCGTCGGAGAGGAATCTCCGGGCGTTCGCGTCCGGGGCCGTGACGCAGGCGGTGTGCTCGAGCAGGTGATTCCGCCGGCGGCCGCCGGCGATGGCGAACTCAACGGCTGGATTGTTGTTGTTTTTTTATATTCCCAGATAATAGCTTTGTCATTTGGTGTGGCGTTGACGCAATCAGTATGTTGATTAGTCGACGTAACAGCAAATTTAATTGGAGATCTCATTAAATTTTAGATGTTGCCATATCATCTACAAACAGTTCAATAAAGGGAGCAAAAT]
[+] EMBL CB668003 [ ATGGCAATGGAGAAGAGCCCTCCTCCGGCGCCGCACTTCCTCTTCGTGGTGAGCGGGATACAGGGCCACATCAACCCGGCGCGCCGCCTCGCCGCGCGCCTGATGGCGTCGGCGCCGGCCGCGCGCGTCACCTTCTCCACCGCCGTCTCCGCGCACCGCCTCATGTTCCCGTCCCTGCCGTCCCCGGCCGGCGAGGACGTCGACGACACCGGCGTCGCGTACGTCCCGCACTCCGACGGCTACGACGACGGGTACAAGCCCGGGGTGCACGCGAGGGACGACTACATGGCGCGCACCCGCGCCGCGGGCACCGAGTCGCTCTCCGCCATCGTCGCGGCTCTCGCGGCGAGGGGGCGCCCGGTGACGTGCATCGTGTACACGTTCCTCGTGGTTTGGGCCCCCGCCGTGGCGCGCGCGCTGGGGATCCCCTCGGCGATCTACTGGATCCAGCCGGCGGCGGCGTTCGCCGTGTACTACCACTACTTCCATGGCCATGGCGAGGCCCTCGCCTCCTGCGCGAACGACCCTGCCCGCGGCGCCGTCGTGCGCCTCCCCGGGATGCCGTTCCTCAGGTCCGACGAGCTCCCCTCCGCCGTGTCCATCGTCTCGCCGGAGCACAAGCACTACCTGCTGCTCGCCATGCTGCGCGACCTGTTCGAGGATCTCGACGAGCTCAAGCCCAGGGTG ]
consensusID : consensus_3913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[GCGGCGGCGGCGGCGAAGGGGACGCGCAAGGGATGGTGGTGGAGTGGTGCGACCAGATGAAGGTGCTCTCGCACCCGGCTGTGGGCTGCTTCGTGACGCACTGCGGGTGGAACTCGGCGCTGGAGAGCATCACCCGCGGCGTGCCGATGGTGGCCGTGCCGCAGTGGACGGACCAGCCGACGGTGGCGTGGCTGGTCGAGGCGCGCATGGGCGCCGGCGTGCGCGCGCGGCTGGACGGCGAGGGCGTGGTCGAGCGCGGCGAGCTGCAGCGGTGCGTGGAGCTCGCCATGGCGGGCGGCGGAGACGGCGGTGTCCGGGCACGGGCGGAGCGATGGAGGGAGCGCGCCGCGGAGGCGGTCGCGGCCGGCGGGTTGTCGGAGAGGAATCTCCGGGCGTTCGCGTCCGGGGCCGTGACGCAGGCGGTGTGCTCGAGCAGGTGATTCCACCGGCGGCCGCCGGCGATGGCGAACTCAACGGGTGGATTATTGTGGTTTTTTTATATTCCCAGATAATACCTTTTTCATTTGGTGTGGCGTGGACGCAATCAGTATGTTGATTAGGTTGTTGTACCAGCACATTTAATTGTGAGATCTCATTAAATTCTAGCAAAAAAGGGGAATACAATCTTGAGG]
[-] EMBL CB668004 [GCGGCGGCGGCGGCGAAGGGGACGCGCAAGGGATGGTGGTGGAGTGGTGCGACCAGATGAAGGTGCTCTCGCACCCGGCTGTGGGCTGCTTCGTGACGCACTGCGGGTGGAACTCGGCGCTGGAGAGCATCACCCGCGGCGTGCCGATGGTGGCCGTGCCGCAGTGGACGGACCAGCCGACGGTGGCGTGGCTGGTCGAGGCGCGCATGGGCGCCGGCGTGCGCGCGCGGCTGGACGGCGAGGGCGTGGTCGAGCGCGGCGAGCTGCAGCGGTGCGTGGAGCTCGCCATGGCGGGCGGCGGAGACGGCGGTGTCCGGGCACGGGCGGAGCGATGGAGGGAGCGCGCCGCGGAGGCGGTCGCGGCCGGCGGGTTGTCGGAGAGGAATCTCCGGGCGTTCGCGTCCGGGGCCGTGACGCAGGCGGTGTGCTCGAGCAGGTGATTCCACCGGCGGCCGCCGGCGATGGCGAACTCAACGGGTGGATTATTGTGGTTTTTTTATATTCCCAGATAATACCTTTTTCATTTGGTGTGGCGTGGACGCAATCAGTATGTTGATTAGGTTGTTGTACCAGCACATTTAATTGTGAGATCTCATTAAATTCTAGCAAAAAAGGGGAATACAATCTTGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3913#0 AAGCTGCTCTGATCAGAAATCCCAATGGCAATGGAGAAGAGCCCTCCTCCGGCGCCGCAC 60
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 TTCCTCTTCGTGGTGAGCGGGATACAGGGCCACATCAACCCGGCGCGCCGCCTCGCCGCG 120
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 CGCCTGATGGCGTCGGCGCCGGCCGCGCGCGTCACCTTCTCCACCGCCGTCTCCGCGCAC 180
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 CGCCTCATGTTCCCGTCCCTGCCGTCCCCGGCCGGCGAGGACGTCGACGACACCGGCGTC 240
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 GCGTACGTCCCGCACTCCGACGGCTACGACGACGGGTACAAGCCCGGGGTGCACGCGAGG 300
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 GACGACTACATGGCGCGCACCCGCGCCGCGGGCACCGAGTCGCTCTCCGCCATCGTCGCG 360
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 GCTCTCGCGGCGAGGGGGCGCCCGGTGACGTGCATCGTGTACACGTTCCTCGTGGTTTGG 420
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 GCCCCCGCCGTGGCGCGCGCGCTGGGGATCCCCTCGGCGATCTACTGGATCCAGCCGGCG 480
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 GCGGCGTTCGCCGTGTACTACCACTACTTCCATGGCCATGGCGAGGCCCTCGCCTCCTGC 540
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 GCGAACGACCCTGCCCGCGGCGCCGTCGTGCGCCTCCCCGGGATGCCGTTCCTCAGGTCC 600
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 GACGAGCTCCCCTCCGCCGTGTCCATCGTCTCGCCGGAGCACAAGCACTACCTGCTGCTC 660
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 GCCATGCTGCGCGACCTGTTCGAGGATCTCGACGAGCTCAAGCCCAGGGTGCTGGTGAAC 720
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 ACGTTCGACGCGCTGGAGCCCGACGCGCTCCGCGCCGTGCCCGATCTGGAGGTCGTCGCC 780
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 GTCGGGCCGGTGGTGCCCGACGGCGAAGCGTCTCTGTCGAGCTCGAGCACGGACATGTTC 840
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 CGGCGAGACGACGCGAGCGCGTGCGTGGATTGGCTGGACACGAAGCCGGCGCGCTCCGTG 900
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 GTGTACGTCTCGTTCGGGACCCTCCTGTCGATGAGCAAGCGGCAGGAGGAGGAGATGAGG 960
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 CGCGGCCTTGAGGCCACCGGCCGGCCGTACCTGTGGGTGGCGCGCCAGGGCGCCGTCGAT 1020
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 GGCGGCGCGACCTTGGACAGCGCACCCACCCCCGCCGCCGATGCCGGCGGCGGCGGCGGC 1080
consensus_3913#1 ----------------------------------------------GCGGCGGCGGCGGC 14
**************
consensus_3913#0 GAAGGGGACGCGCAAGGGATGGTGGTGGGGTGGTGCGACCAGATGAAGGTGCTCTCGCAC 1140
consensus_3913#1 GAAGGGGACGCGCAAGGGATGGTGGTGGAGTGGTGCGACCAGATGAAGGTGCTCTCGCAC 74
**************************** *******************************
consensus_3913#0 CCGGCTGTGGGCTGCTTCGTGACGCACTGCGGGTGGAACTCGGCGCTGGAGAGCATCACC 1200
consensus_3913#1 CCGGCTGTGGGCTGCTTCGTGACGCACTGCGGGTGGAACTCGGCGCTGGAGAGCATCACC 134
************************************************************
consensus_3913#0 CGCGGCGTGCCGATGGTGGCCGTGCCGCAGTGGACGGACCAGCCGACGGTGGCGTGGCTG 1260
consensus_3913#1 CGCGGCGTGCCGATGGTGGCCGTGCCGCAGTGGACGGACCAGCCGACGGTGGCGTGGCTG 194
************************************************************
consensus_3913#0 GTCGAGGCGCGCATGGGCGCCGGCGTGCGCGCGCGGCTGGACGGCGAGGGCGTGGTCGAG 1320
consensus_3913#1 GTCGAGGCGCGCATGGGCGCCGGCGTGCGCGCGCGGCTGGACGGCGAGGGCGTGGTCGAG 254
************************************************************
consensus_3913#0 CGCGGCGAGCTGCAGCGGTGCGTGGAGCTCGCCATGGCGGGCGGCGGAGACGGCGGTGTC 1380
consensus_3913#1 CGCGGCGAGCTGCAGCGGTGCGTGGAGCTCGCCATGGCGGGCGGCGGAGACGGCGGTGTC 314
************************************************************
consensus_3913#0 CGGGCACGGGCGGAGCGATGGAGGGAGCGCGCCGCGGAGGCGGTCGCGGCCGGCGGGTCG 1440
consensus_3913#1 CGGGCACGGGCGGAGCGATGGAGGGAGCGCGCCGCGGAGGCGGTCGCGGCCGGCGGGTTG 374
********************************************************** *
consensus_3913#0 TCGGAGAGGAATCTCCGGGCGTTCGCGTCCGGGGCCGTGACGCAGGCGGTGTGCTCGAGC 1500
consensus_3913#1 TCGGAGAGGAATCTCCGGGCGTTCGCGTCCGGGGCCGTGACGCAGGCGGTGTGCTCGAGC 434
************************************************************
consensus_3913#0 AGGTGATTCCGCCGGCGGCCGCCGGCGATGGCGAACTCAACGGCTGGATTGTTGTTGTTT 1560
consensus_3913#1 AGGTGATTCCACCGGCGGCCGCCGGCGATGGCGAACTCAACGGGTGGATTATTGTGGTTT 494
********** ******************************** ****** **** ****
consensus_3913#0 TTTTATATTCCCAGATAATAGCTTTGTCATTTGGTGTGGCGTTGACGCAATCAGTATGTT 1620
consensus_3913#1 TTTTATATTCCCAGATAATACCTTTTTCATTTGGTGTGGCGTGGACGCAATCAGTATGTT 554
******************** **** **************** *****************
consensus_3913#0 GATTAG-TCGACGTAACAGCAAATTTAATTG-GAGATCTCATTAAATTTTAG----ATGT 1674
consensus_3913#1 GATTAGGTTGTTGTACCAGCACATTTAATTGTGAGATCTCATTAAATTCTAGCAAAAAAG 614
****** * * *** ***** ********* **************** *** *
consensus_3913#0 TGCCATATCATCTACAAACAGTTCAATAAAGGGAGCAAAAT 1715
consensus_3913#1 GGGAATACAATCTTGAGG----------------------- 632
* *** **** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||