cluster # 3914

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Oryza sativa
cluster # 3914 cluster # 3914 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3914#0 length = 607 sequences # 1

consensus_3914#1 length = 367 sequences # 2

consensusID : consensus_3914#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [CACACAAGAAAACGCGCGCCAACCACCGCATCTTCCCCTCCCCCCGGCCTCTCCGACGTCGACCATGGCCATGCTCCTCGCCTCCCTCCTCTCCCCTTCCCCTCTTCCCACCACCACCACCTCTTCCACGTCGCCGAGGGCTGTCAGGCTCGCGCCGGCGAAGCCGCTCGCCGCCACTCTCGCAGCGGTGGCCGCGGCGGGGCTCCTGGCGCTGTCCCCGGCCACGGCGGCGGCGGCGGCGGCCGGGGAGGCGGAGTTCAAGGTGTACTACGGCACGGCGGCGAGCGCGGCGAACTACGGCGGGTACGGCGGGAACGCGAGCAAGAAGGACGCGGCGGAGTACGTGTACGAGGTGCCGGAGGGGTGGAAGGAGAGGCTGGTGTCCAAGGTGGAGAAGGGCACCAACGGCACGGACAGCGAGTTCTTCAACCCGCGGAAGCGGTCGGAGCGGGAGTACCTCACGTTCCTCGCCGGGTTCCGGGCGCTGGCGCCGGTGGGCGCCGTGCTCGACAACCTCGCGCTCTCCGACGTCGGGCTCCAGGACCAGATCGCGTCGGCGGACGGCGTGCTGTCGACGGAGCGGAGGGACGGCGGCGGGCAGCTCTAC]

[+] EMBL AK062330             [CACACAAGAAAACGCGCGCCAACCACCGCATCTTCCCCTCCCCCCGGCCTCTCCGACGTCGACCATGGCCATGCTCCTCGCCTCCCTCCTCTCCCCTTCCCCTCTTCCCACCACCACCACCTCTTCCACGTCGCCGAGGGCTGTCAGGCTCGCGCCGGCGAAGCCGCTCGCCGCCACTCTCGCAGCGGTGGCCGCGGCGGGGCTCCTGGCGCTGTCCCCGGCCACGGCGGCGGCGGCGGCGGCCGGGGAGGCGGAGTTCAAGGTGTACTACGGCACGGCGGCGAGCGCGGCGAACTACGGCGGGTACGGCGGGAACGCGAGCAAGAAGGACGCGGCGGAGTACGTGTACGAGGTGCCGGAGGGGTGGAAGGAGAGGCTGGTGTCCAAGGTGGAGAAGGGCACCAACGGCACGGACAGCGAGTTCTTCAACCCGCGGAAGCGGTCGGAGCGGGAGTACCTCACGTTCCTCGCCGGGTTCCGGGCGCTGGCGCCGGTGGGCGCCGTGCTCGACAACCTCGCGCTCTCCGACGTCGGGCTCCAGGACCAGATCGCGTCGGCGGACGGCGTGCTGTCGACGGAGCGGAGGGACGGCGGCGGGCAGCTCTAC]




>consensus_3914#0
CACACAAGAAAACGCGCGCCAACCACCGCATCTTCCCCTCCCCCCGGCCTCTCCGACGTC
GACCATGGCCATGCTCCTCGCCTCCCTCCTCTCCCCTTCCCCTCTTCCCACCACCACCAC
CTCTTCCACGTCGCCGAGGGCTGTCAGGCTCGCGCCGGCGAAGCCGCTCGCCGCCACTCT
CGCAGCGGTGGCCGCGGCGGGGCTCCTGGCGCTGTCCCCGGCCACGGCGGCGGCGGCGGC
GGCCGGGGAGGCGGAGTTCAAGGTGTACTACGGCACGGCGGCGAGCGCGGCGAACTACGG
CGGGTACGGCGGGAACGCGAGCAAGAAGGACGCGGCGGAGTACGTGTACGAGGTGCCGGA
GGGGTGGAAGGAGAGGCTGGTGTCCAAGGTGGAGAAGGGCACCAACGGCACGGACAGCGA
GTTCTTCAACCCGCGGAAGCGGTCGGAGCGGGAGTACCTCACGTTCCTCGCCGGGTTCCG
GGCGCTGGCGCCGGTGGGCGCCGTGCTCGACAACCTCGCGCTCTCCGACGTCGGGCTCCA
GGACCAGATCGCGTCGGCGGACGGCGTGCTGTCGACGGAGCGGAGGGACGGCGGCGGGCA
GCTCTAC

consensusID : consensus_3914#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 367
fasta sequence

                              [GANTCCNCATAGCTAAAGCAAGTGCATGGAGGCCCNCGACAANANCNACCATTTTCATGCTACNCGCCTCCCTCCTCTCCCCNTCCCCTNTTCCCCCCACCACCACATCTTCCACGTCGCCGAGGGCTGTCAGGCTCGCGCCGGCGAAGCCGCTCGCCGCCACTCTCGCAGCGGTGGCCGCGGCGGGGCTCCTGGCGCTGTCCCCGGCCACGGCGGCGGTNGNGGCGGCCGGGGAGGCNGAATTCAAGGTGTACTACGGCACGGCGGCGACGCGCCAGANCGCCGCCGGGTAGCTCCTANTCCTAGCTAGCNATTGTTCGCCGCCGCCNGCCGGCGGNAGTCTCAGTGTATTCTTTGCTTTCGANCG]

[+] EMBL AA754525             [GANTCCNCATAGCTAAAGCAAGTGCATGGAGGCCCNCGACAANANCNACCATTTTCATGCTACNCGCCTCCCTCCTCTCCCCNTCCCCTNTTCCCCCCACCACCACATCTTCCACGTCGCCGAGGGCTGTCAGGCTCGCGCCGGCGAAGCCGCTCGCCGCCACTCTCGCAGCGGTGGCCGCGGCGGGGCTCCTGGCGCTGTCCCCGGCCACGGCGGCGGTNGNGGCGGCCGGGGAGGCNGAATTCAAGGTGTACTACGGCACGGCGGCGACGCGCCAGANCGCCGCCGGGTAGCTCCTANTCCTAGCTAGCNATTGTTCGCCGCCGCCNGCCGGCGGNAGTCTCAGTGTATTCTTTGCTTTCGANCG]
[+] EMBL AA753051             [GANTCCNCATAGCTAAAGCAAGTGCATGGAGGCCCNCGACAANANCNACCATTTTCATGCTACNCGCCTCCCTCCTCTCCCCNTCCCCTNTTCCCCCCACCACCACATCTTCCACGTCGCCGAGGGCTGTCAGGCTCGCGCCGGCGAAGCCGCTCGCCGCCACTCTCGCAGCGGTGGCCGCGGCGGGGCTCCTGGCGCTGTCCCCGGCCACGGCGGCGGTNGNGGCGGCCGGGGAGGCNGAATTCAAGGTGTACTACGGCACGGCGGCGACGCGCCAGANCGCCGCCGGGTAGCTCCTANTCCTAGCTAGCNATTGTTCGCCGCCGCCNGCCGGCGGNAGTCTCAGTGTATTCTTTGCTTTCGANCG]




>consensus_3914#1
GANTCCNCATAGCTAAAGCAAGTGCATGGAGGCCCNCGACAANANCNACCATTTTCATGC
TACNCGCCTCCCTCCTCTCCCCNTCCCCTNTTCCCCCCACCACCACATCTTCCACGTCGC
CGAGGGCTGTCAGGCTCGCGCCGGCGAAGCCGCTCGCCGCCACTCTCGCAGCGGTGGCCG
CGGCGGGGCTCCTGGCGCTGTCCCCGGCCACGGCGGCGGTNGNGGCGGCCGGGGAGGCNG
AATTCAAGGTGTACTACGGCACGGCGGCGACGCGCCAGANCGCCGCCGGGTAGCTCCTAN
TCCTAGCTAGCNATTGTTCGCCGCCGCCNGCCGGCGGNAGTCTCAGTGTATTCTTTGCTT
TCGANCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3914#0      CACACAAGAAAACGCGCGCCAACCACCGCATCTTCCCCTCCCCCCGGCCTCTCCGACGTC 60
consensus_3914#1      ---------GANTCCNCAT-AGCTAAAGCAAGTGCATGGAGGCCCN----CGACAANANC 46
                                *   * *   * * *  ***  * *       ***     *  * *   *

consensus_3914#0      GACCATGGCCATGCTCCTCGCCTCCCTCCTCTCCCCTTCCCCTCTTCCCACCACCACCAC 120
consensus_3914#1      NACCATTTTCATGCTACNCGCCTCCCTCCTCTCCCCNTCCCCTNTTCCCCCCACCACCAC 106
                       *****   ****** * ****************** ****** ***** **********

consensus_3914#0      CTCTTCCACGTCGCCGAGGGCTGTCAGGCTCGCGCCGGCGAAGCCGCTCGCCGCCACTCT 180
consensus_3914#1      ATCTTCCACGTCGCCGAGGGCTGTCAGGCTCGCGCCGGCGAAGCCGCTCGCCGCCACTCT 166
                       ***********************************************************

consensus_3914#0      CGCAGCGGTGGCCGCGGCGGGGCTCCTGGCGCTGTCCCCGGCCACGGCGGCGGCGGCGGC 240
consensus_3914#1      CGCAGCGGTGGCCGCGGCGGGGCTCCTGGCGCTGTCCCCGGCCACGGCGGCGGTNGNGGC 226
                      *****************************************************  * ***

consensus_3914#0      GGCCGGGGAGGCGGAGTTCAAGGTGTACTACGGCACGGCGGCGAGCGCGGCGAACTACGG 300
consensus_3914#1      GGCCGGGGAGGCNGAATTCAAGGTGTACTACGGCACGGCGGCGA-CGCGCCAGANCGCCG 285
                      ************ ** **************************** **** *  *   * *

consensus_3914#0      CGGGTACGGCGGGAACGCGAGCAAGAAGGACGCGGCGGAGTACGTGTACGAGGTGCCGGA 360
consensus_3914#1      CCGGGTAGCTCCTANTCCTAGCTA-------GCNATTGTTCGCCGCCGCCNGCCGGCGGN 338
                      * **   *     *   * *** *       **    *    *     *  *  * *** 

consensus_3914#0      GGGGTGGAAGGAGAGGCTGGTGTCCAAGGTGGAGAAGGGCACCAACGGCACGGACAGCGA 420
consensus_3914#1      AGTCTCAGTGTATTCTTTGCTTTCGANCG------------------------------- 367
                       *  *    * *     ** * ** *  *                               

consensus_3914#0      GTTCTTCAACCCGCGGAAGCGGTCGGAGCGGGAGTACCTCACGTTCCTCGCCGGGTTCCG 480
consensus_3914#1      ------------------------------------------------------------
                                                                                  

consensus_3914#0      GGCGCTGGCGCCGGTGGGCGCCGTGCTCGACAACCTCGCGCTCTCCGACGTCGGGCTCCA 540
consensus_3914#1      ------------------------------------------------------------
                                                                                  

consensus_3914#0      GGACCAGATCGCGTCGGCGGACGGCGTGCTGTCGACGGAGCGGAGGGACGGCGGCGGGCA 600
consensus_3914#1      ------------------------------------------------------------
                                                                                  

consensus_3914#0      GCTCTAC 607
consensus_3914#1      -------