These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_393#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1164 fasta sequence [ACGTAGCGCGCGGCACACGGATCAACGTGAACGTGAACGAGACCGAGACCTCGCCGCCGGCGACCAAAAATTTGTACTAACTGTGATGGCCACGGTGGAGGTGTTGACGTCGGAGGTGGTCGCCCCGGCGGAGGAGACGCCGGCGGGCGCCGTGTGGCTGTCCAACCTCGACCTCGCCGCGCGGCGCGGGTACACGCCGACGGTGTACTTCTACCGGCGGAACGGCGACGACGAGGCGGCGTTCTTCGCGGCGGACGCCGTGAGGGACGGCCTCGCCAGGGCTCTGGTGCCGTTCTACCCGCTCGCCGGCCGGCTCGGGCTCGCCGGCGGCGGCGAAGACGGGCGCGTCCAGATCGACTGCACCGGCGAGGGCGCGGTGTTCGTCACGGCGAGGTCCGGGCACTACGCGCTGGACGACCTGATGAACGAGTTCGTGCCGTGCGACGAGATGCGCGACCTGTTCGTGCCCCCGACGCCGCCGCCGAACCCGCCGTGCGCGCTGCTGCTGGTGCAGGTCACGCACCTGCGGTGCGGCGGCGTCGTGCTCGGCATGGCGCTGCACCACTCGGTGGTGGACGCGAGGAGCGCGGCGCACTTCGCGGAGACGTGGGCGAGCATCGTGCGCGGCGCGCCCGCCGGGGACGCGCCCGTGCCGCCGTGCTTCGACCACAAGCTGCTCGCCGCGCGGCCGGCCCGCGCGGTGCTGTACGACCACCCGGAGTACAAGCCCGAGCCGGCGCCGGCGCCGGCGCACGCCGCCACGGCGTCCACGTACGCGAGCGCCATCATCACGCTGACGAAGCAGCAGGTGGGCGCGCTGAAGGCGGCGTGCGCGGGGGCGTCCACGTTCCGCGCGGTGGTGGCGCTGGTGTGGCAGTGCGCGTGCCGCGCGCGTTCGCTGCCGCCGGACAAGGCAAACCTATTCCTTCTCTATAAGTACATCTCCGAAGATTGGGTCGACATACAACTTAATATTCAACAAAGGGATAATTGCATCTATGCCCCTACTTTGAAAGCCAATTGCTGTTTTACCCCCACTTTTTAGGGTTTGCAGTTTTACCCCTATTTTTTGAATCTGAACCAGCCGTCTACCCTCACTTGTGACAGCCGTTTGGTAGGTCCCACGTTTTATGTTAAAGAAATACAAAAGAAGATAAAGAAAAG] [+] EMBL AK109116 [ACGTAGCGCGCGGCACACGGATCAACGTGAACGTGAACGAGACCGAGACCTCGCCGCCGGCGACCAAAAATTTGTACTAACTGTGATGGCCACGGTGGAGGTGTTGACGTCGGAGGTGGTCGCCCCGGCGGAGGAGACGCCGGCGGGCGCCGTGTGGCTGTCCAACCTCGACCTCGCCGCGCGGCGCGGGTACACGCCGACGGTGTACTTCTACCGGCGGAACGGCGACGACGAGGCGGCGTTCTTCGCGGCGGACGCCGTGAGGGACGGCCTCGCCAGGGCTCTGGTGCCGTTCTACCCGCTCGCCGGCCGGCTCGGGCTCGCCGGCGGCGGCGAAGACGGGCGCGTCCAGATCGACTGCACCGGCGAGGGCGCGGTGTTCGTCACGGCGAGGTCCGGGCACTACGCGCTGGACGACCTGATGAACGAGTTCGTGCCGTGCGACGAGATGCGCGACCTGTTCGTGCCCCCGACGCCGCCGCCGAACCCGCCGTGCGCGCTGCTGCTGGTGCAGGTCACGCACCTGCGGTGCGGCGGCGTCGTGCTCGGCATGGCGCTGCACCACTCGGTGGTGGACGCGAGGAGCGCGGCGCACTTCGCGGAGACGTGGGCGAGCATCGTGCGCGGCGCGCCCGCCGGGGACGCGCCCGTGCCGCCGTGCTTCGACCACAAGCTGCTCGCCGCGCGGCCGGCCCGCGCGGTGCTGTACGACCACCCGGAGTACAAGCCCGAGCCGGCGCCGGCGCCGGCGCACGCCGCCACGGCGTCCACGTACGCGAGCGCCATCATCACGCTGACGAAGCAGCAGGTGGGCGCGCTGAAGGCGGCGTGCGCGGGGGCGTCCACGTTCCGCGCGGTGGTGGCGCTGGTGTGGCAGTGCGCGTGCCGCGCGCGTTCGCTGCCGCCGGACAAGGCAAACCTATTCCTTCTCTATAAGTACATCTCCGAAGATTGGGTCGACATACAACTTAATATTCAACAAAGGGATAATTGCATCTATGCCCCTACTTTGAAAGCCAATTGCTGTTTTACCCCCACTTTTTAGGGTTTGCAGTTTTACCCCTATTTTTTGAATCTGAACCAGCCGTCTACCCTCACTTGTGACAGCCGTTTGGTAGGTCCCACGTTTTATGTTAAAGAAATACAAAAGAAGATAAAGAAAAG] consensusID : consensus_393#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 539 fasta sequence [AGCTAGCTCGTGAAGAAGCCATGGCGACGGTGGACGTGCTGACGTCGGAGGTGGTCGTCCCCGCCGGCGAGACGCCGGGNCGACCGTCTGGCTGTCCAACCTCGACCTCGCCGCGCGCCGCGCTGACACGCCGACGGTGTTCTTCTACCGCCACAACGGCGAGCCGGGGTTCTTCGCGGCCGACGCCATGAGGGACAGCCTCGCCAGGGCGCTCGTGGCGTTCTACCCGGTCGCCGGCCGCCTCGGGCTCGACGGCGACGGCCGCGTCCAGGTCGACTGCACCGGCGAGGGCGTGGTGTTCGCCACGGCGAGGTCCGGGCACTACGCGCTCGACGACCTGATGGGCGAGTTCGTGCCGTGCGACGAGATGCGCGACCTGTTCGTGCCCGCGGCGCCGGCGGNGCGAGCTGCTGCCCGCGCGGCGGCGCACTTGTTGCTGGTGCAGGTCACGTACCTGNGGTGCGGCGGCGTCGTGCTCGGCATAGCGCTGCACCACTCNATCGCCGAAGGGCGGAACGCGGCGCACTTCGTGGAGACGT] [+] EMBL C97336 [AGCTAGCTCGTGAAGAAGCCATGGCGACGGTGGACGTGCTGACGTCGGAGGTGGTCGTCCCCGCCGGCGAGACGCCGGGNCGACCGTCTGGCTGTCCAACCTCGACCTCGCCGCGCGCCGCGCTGACACGCCGACGGTGTTCTTCTACCGCCACAACGGCGAGCCGGGGTTCTTCGCGGCCGACGCCATGAGGGACAGCCTCGCCAGGGCGCTCGTGGCGTTCTACCCGGTCGCCGGCCGCCTCGGGCTCGACGGCGACGGCCGCGTCCAGGTCGACTGCACCGGCGAGGGCGTGGTGTTCGCCACGGCGAGGTCCGGGCACTACGCGCTCGACGACCTGATGGGCGAGTTCGTGCCGTGCGACGAGATGCGCGACCTGTTCGTGCCCGCGGCGCCGGCGGNGCGAGCTGCTGCCCGCGCGGCGGCGCACTTGTTGCTGGTGCAGGTCACGTACCTGNGGTGCGGCGGCGTCGTGCTCGGCATAGCGCTGCACCACTCNATCGCCGAAGGGCGGAACGCGGCGCACTTCGTGGAGACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_393#0 ACGTAGCGCGCGGCACACGGATCAACGTGAACGTGAACGAGACCGAGACCTCGCCGCCGG 60 consensus_393#1 ------------------------------------------------------------ consensus_393#0 CGACCAAAAATTTGTACTAACTGTGATGGCCACGGTGGAGGTGTTGACGTCGGAGGTGGT 120 consensus_393#1 ----AGCTAGCTCGTGAAGAA-GCCATGGCGACGGTGGACGTGCTGACGTCGGAGGTGGT 55 * * ** * * ***** ******** *** **************** consensus_393#0 CGCCCCGGCGGAGGAGACGCCGGCGGGCGCCGTGTGGCTGTCCAACCTCGACCTCGCCGC 180 consensus_393#1 CGTCCCCGCCGGCGAGACGCCGG-GNCGACCGTCTGGCTGTCCAACCTCGACCTCGCCGC 114 ** *** ** * ********** * **** ************************** consensus_393#0 GCGGCGCGGGTACACGCCGACGGTGTACTTCTACCGGCGGAACGGCGACGACGAGGCGGC 240 consensus_393#1 GCGCCGCGCTGACACGCCGACGGTGTTCTTCTACCGCCACAACGGCGA------GCCGGG 168 *** **** *************** ********* * ******** * *** consensus_393#0 GTTCTTCGCGGCGGACGCCGTGAGGGACGGCCTCGCCAGGGCTCTGGTGCCGTTCTACCC 300 consensus_393#1 GTTCTTCGCGGCCGACGCCATGAGGGACAGCCTCGCCAGGGCGCTCGTGGCGTTCTACCC 228 ************ ****** ******** ************* ** *** ********** consensus_393#0 GCTCGCCGGCCGGCTCGGGCTCGCCGGCGGCGGCGAAGACGGGCGCGTCCAGATCGACTG 360 consensus_393#1 GGTCGCCGGCCGCCTCGGGCTCGACGGCGACGGC---------CGCGTCCAGGTCGACTG 279 * ********** ********** ***** **** ********* ******* consensus_393#0 CACCGGCGAGGGCGCGGTGTTCGTCACGGCGAGGTCCGGGCACTACGCGCTGGACGACCT 420 consensus_393#1 CACCGGCGAGGGCGTGGTGTTCGCCACGGCGAGGTCCGGGCACTACGCGCTCGACGACCT 339 ************** ******** *************************** ******** consensus_393#0 GATGAACGAGTTCGTGCCGTGCGACGAGATGCGCGACCTGTTCGTGCCCCCGACGCCGCC 480 consensus_393#1 GATGGGCGAGTTCGTGCCGTGCGACGAGATGCGCGACCTGTTCGTGCCCGCGGCGCCGGC 399 **** ******************************************* ** ***** * consensus_393#0 GCCG-AACCCGCCGTGCGCGC-----------TGCTGCTGGTGCAGGTCACGCACCTGCG 528 consensus_393#1 GGNGCGAGCTGCTGCCCGCGCGGCGGCGCACTTGTTGCTGGTGCAGGTCACGTACCTGNG 459 * * * * ** * ***** ** ***************** ***** * consensus_393#0 GTGCGGCGGCGTCGTGCTCGGCATGGCGCTGCACCACTCGGTGGTGGACGCGAGGAGCGC 588 consensus_393#1 GTGCGGCGGCGTCGTGCTCGGCATAGCGCTGCACCACTCNATCGCCGAAGGGCGGAACGC 519 ************************ ************** * * ** * * *** *** consensus_393#0 GGCGCACTTCGCGGAGACGTGGGCGAGCATCGTGCGCGGCGCGCCCGCCGGGGACGCGCC 648 consensus_393#1 GGCGCACTTCGTGGAGACGT---------------------------------------- 539 *********** ******** consensus_393#0 CGTGCCGCCGTGCTTCGACCACAAGCTGCTCGCCGCGCGGCCGGCCCGCGCGGTGCTGTA 708 consensus_393#1 ------------------------------------------------------------ consensus_393#0 CGACCACCCGGAGTACAAGCCCGAGCCGGCGCCGGCGCCGGCGCACGCCGCCACGGCGTC 768 consensus_393#1 ------------------------------------------------------------ consensus_393#0 CACGTACGCGAGCGCCATCATCACGCTGACGAAGCAGCAGGTGGGCGCGCTGAAGGCGGC 828 consensus_393#1 ------------------------------------------------------------ consensus_393#0 GTGCGCGGGGGCGTCCACGTTCCGCGCGGTGGTGGCGCTGGTGTGGCAGTGCGCGTGCCG 888 consensus_393#1 ------------------------------------------------------------ consensus_393#0 CGCGCGTTCGCTGCCGCCGGACAAGGCAAACCTATTCCTTCTCTATAAGTACATCTCCGA 948 consensus_393#1 ------------------------------------------------------------ consensus_393#0 AGATTGGGTCGACATACAACTTAATATTCAACAAAGGGATAATTGCATCTATGCCCCTAC 1008 consensus_393#1 ------------------------------------------------------------ consensus_393#0 TTTGAAAGCCAATTGCTGTTTTACCCCCACTTTTTAGGGTTTGCAGTTTTACCCCTATTT 1068 consensus_393#1 ------------------------------------------------------------ consensus_393#0 TTTGAATCTGAACCAGCCGTCTACCCTCACTTGTGACAGCCGTTTGGTAGGTCCCACGTT 1128 consensus_393#1 ------------------------------------------------------------ consensus_393#0 TTATGTTAAAGAAATACAAAAGAAGATAAAGAAAAG 1164 consensus_393#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||