These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3931#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1939 fasta sequence [CCCAAATCCCCCAACTCCGGCACCGGAAATGCGGCGCGGCGGCGGCGGAGGGGGCAGGCGCCTCCCGAAGTCCTCCCTGGCGCCCTCGGCGGCGTCGGATCGCACCCCGCTGCTGGATCCCCACGTCCTCCACCCGCGCAACCTCGACCTCGCCTTCTCCCGCCGCGACTCCGACGCCGCCAGCCTCTGCAGCAGCCGGCCGTCCTCCATCGGCACGGGCCCTTCGTTCGCCGCCCCCGTCACCAACTTCTCCGACAGGGCCTCCCAGGCGGCCGCCCTCCGCGTCGTCAACGCCTACCTCGCCCCCGCCGTCAGCCTCCGCCCGCCTCTCCCCTCCGCCAAGGACATCGTCGCCGCCTTCCGCTGCCCCTTCAAGCTCACCCGCTCCGCCCTCAAGGCCCCCGGCACCCCGCACTCCTGGCCGCCGCTCCTCTCCGTCCTCTACTGGCTCACCCTCCTCGTCAACTCCAGTGAGAGCGGCGCCGGCGGCGACGACTCTCCTGCCGCCTCAAATGACCTCATGCTCTACATTACCAACAGCTACTCGCTGTTCATCTCTGGGGACGATGATTCGGTCGCGTCTCTCGACGAGGAGTACTCCTCCAAAGCCCGTGCACATGCGCAGGCAGCCGTCGAGGCCTCACAGGCGCTGGAGAAGGAGGCACTGGATCTGGAGTCCAAGAGGACTAAGCTCACCTCAGGACCCTCGCGGCTGGAGGCACTGCAGGCAGAGAAGGAGGCCCTCACTGCCGACGTGGAGAAATTTGAAGCGGTTGTGAAGAGTTGGACAGTGAAGATACAGGAGAAGGAAGAGTCATCTGTACATTTGGAGAAGGAATTGGAGGCCAAGCTGATGGATCAACAGCGGATAGCAGCTGAAAACGAGGAGCTGATGAAGAAGGTGGACGCACAGGTTGTGAATGTGAGAGATGTCGATCGGATGCAGAGGGAGATCCAGTCAGTGGAGCGTGACAATGTCAAGTTGGAGAATGGGAATGCGACATTGGAGGAGAAGGGTTGGGAGCTCGAAGCTGCGGTGGTTGGGAAGCTTGAGGAGATTGAGGGACTTGTGGAGCAGTGCAACCAGGCCCTCAGAAAATTGAAACCTGGTATTGATTTCCAGTACATGCTAAACACAAAAGCGTCCTCCCCGGTTGAACTGCTAGGAACCAGTTACAAAACTATTATGAAACCTGCACTCAATTCTCTTGCTGACGAGGCTAGAAGGATATCCATCTTAAAGCATGATGAGTCAGTTGAGCTAGAAAAACAGTCACAACGAAATGCTAAAATTCTGTCTGAGAAAAAGAACCATATTTCAGTTTGTCAGACCAAAACTGATGAGATGGTTGCTCGATTGGATTCACTGGATGTTGAAATTGGGAATCATGTTTCAAGATGTAAGGCTGATGCTAGACTAATGAAAGATGAGCTGGAGAAAAAGGATCACCACCTGAGTACTGTTGAGAAGGAGTCAGAAGAATTTTTAAAGATCTCCGAAAAGAAGCTTGAAGATGCAAAAAGGGAAACTGATGAAGAAATTCAGATGTGCGCCAGAGAACTGCTGAAACTTATTGATTCGGTTACAGAGTACAAAGAGTTCATGGAAACATCAATATCTGGGATGAGGAAAGACCTTTATGAAACCGTCGACGACATCTCTTCTTTGGCATCCAAGGCAGCATCTACCCGCCAAACTTCTGCTCAGTTTGTAATGTGATTATGTGAAGAAAGCTCTTCACGGAAGTGTTAGCTCCCAAGTGATCTCTTCCTTCCTACGCCTGAGATATTTATACCTCTTGGAGCTCTTGTACGCATGTGCCATCCTGTTAATATAAACTAGGTGAGTATTCCTTAGATTGCAATGGAAATAGGATATTATTTGCTTTCCAACTCTTGTGCATGTTGATTAAAATAGAAATGTTTTTGTTGGGCCTGC] [+] EMBL AK063363 [CCCAAATCCCCCAACTCCGGCACCGGAAATGCGGCGCGGCGGCGGCGGAGGGGGCAGGCGCCTCCCGAAGTCCTCCCTGGCGCCCTCGGCGGCGTCGGATCGCACCCCGCTGCTGGATCCCCACGTCCTCCACCCGCGCAACCTCGACCTCGCCTTCTCCCGCCGCGACTCCGACGCCGCCAGCCTCTGCAGCAGCCGGCCGTCCTCCATCGGCACGGGCCCTTCGTTCGCCGCCCCCGTCACCAACTTCTCCGACAGGGCCTCCCAGGCGGCCGCCCTCCGCGTCGTCAACGCCTACCTCGCCCCCGCCGTCAGCCTCCGCCCGCCTCTCCCCTCCGCCAAGGACATCGTCGCCGCCTTCCGCTGCCCCTTCAAGCTCACCCGCTCCGCCCTCAAGGCCCCCGGCACCCCGCACTCCTGGCCGCCGCTCCTCTCCGTCCTCTACTGGCTCACCCTCCTCGTCAACTCCAGTGAGAGCGGCGCCGGCGGCGACGACTCTCCTGCCGCCTCAAATGACCTCATGCTCTACATTACCAACAGCTACTCGCTGTTCATCTCTGGGGACGATGATTCGGTCGCGTCTCTCGACGAGGAGTACTCCTCCAAAGCCCGTGCACATGCGCAGGCAGCCGTCGAGGCCTCACAGGCGCTGGAGAAGGAGGCACTGGATCTGGAGTCCAAGAGGACTAAGCTCACCTCAGGACCCTCGCGGCTGGAGGCACTGCAGGCAGAGAAGGAGGCCCTCACTGCCGACGTGGAGAAATTTGAAGCGGTTGTGAAGAGTTGGACAGTGAAGATACAGGAGAAGGAAGAGTCATCTGTACATTTGGAGAAGGAATTGGAGGCCAAGCTGATGGATCAACAGCGGATAGCAGCTGAAAACGAGGAGCTGATGAAGAAGGTGGACGCACAGGTTGTGAATGTGAGAGATGTCGATCGGATGCAGAGGGAGATCCAGTCAGTGGAGCGTGACAATGTCAAGTTGGAGAATGGGAATGCGACATTGGAGGAGAAGGGTTGGGAGCTCGAAGCTGCGGTGGTTGGGAAGCTTGAGGAGATTGAGGGACTTGTGGAGCAGTGCAACCAGGCCCTCAGAAAATTGAAACCTGGTATTGATTTCCAGTACATGCTAAACACAAAAGCGTCCTCCCCGGTTGAACTGCTAGGAACCAGTTACAAAACTATTATGAAACCTGCACTCAATTCTCTTGCTGACGAGGCTAGAAGGATATCCATCTTAAAGCATGATGAGTCAGTTGAGCTAGAAAAACAGTCACAACGAAATGCTAAAATTCTGTCTGAGAAAAAGAACCATATTTCAGTTTGTCAGACCAAAACTGATGAGATGGTTGCTCGATTGGATTCACTGGATGTTGAAATTGGGAATCATGTTTCAAGATGTAAGGCTGATGCTAGACTAATGAAAGATGAGCTGGAGAAAAAGGATCACCACCTGAGTACTGTTGAGAAGGAGTCAGAAGAATTTTTAAAGATCTCCGAAAAGAAGCTTGAAGATGCAAAAAGGGAAACTGATGAAGAAATTCAGATGTGCGCCAGAGAACTGCTGAAACTTATTGATTCGGTTACAGAGTACAAAGAGTTCATGGAAACATCAATATCTGGGATGAGGAAAGACCTTTATGAAACCGTCGACGACATCTCTTCTTTGGCATCCAAGGCAGCATCTACCCGCCAAACTTCTGCTCAGTTTGTAATGTGATTATGTGAAGAAAGCTCTTCACGGAAGTGTTAGCTCCCAAGTGATCTCTTCCTTCCTACGCCTGAGATATTTATACCTCTTGGAGCTCTTGTACGCATGTGCCATCCTGTTAATATAAACTAGGTG ] [+] EMBL AU100801 [ ACAAAGAGTTCATGGAAACATCAATATCTGGGATGAGG AAGACCTTTATGAAACCGTCGACGACATCTCTTCTTTGGCATCCAAGGCAGCATCTACCCGCCAAACTTCTGCTCAGTTTGTAATGTGATTATGTGAAGAAAGCTCTTCACGGAAGTGTTAGCTCCCAAGTGATCTCTTCCTTCCTACGCCTGAGATATTTATACCTCTTGGAGCTCTTGTACGCATGTGCCATCCTGTTAATATAAACTAGGTGAGTATTCCTTAGATTGCAATGGAAATAGGATATTATTTGCTTTCCAACTCTTGTGCATGTTGATTAAAATAGAAATGTTTTTGTTGGGCCTGC] consensusID : consensus_3931#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 198 fasta sequence [TCGTCAACGCCTACCTCGCCCCCGCCGTCAGCCTCCGCCCGCCTCTCCCCTCCGCCAAGGACATCGTCGCCGCCTTCCGCCACCTCTTCGAGTGCCTCGACTTCCCCCTCCANGGCGCGTTCGAGGACGACCTCCTCTTCGTCCTCCGCGTCCTCCGCTGCCCCTTCAAGCTCACCCGCTCCGCCCTCAAGGCCCCCG] [+] EMBL AU100802 [TCGTCAACGCCTACCTCGCCCCCGCCGTCAGCCTCCGCCCGCCTCTCCCCTCCGCCAAGGACATCGTCGCCGCCTTCCGCCACCTCTTCGAGTGCCTCGACTTCCCCCTCCANGGCGCGTTCGAGGACGACCTCCTCTTCGTCCTCCGCGTCCTCCGCTGCCCCTTCAAGCTCACCCGCTCCGCCCTCAAGGCCCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3931#0 CCCAAATCCCCCAACTCCGGCACCGGAAATGCGGCGCGGCGGCGGCGGAGGGGGCAGGCG 60 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 CCTCCCGAAGTCCTCCCTGGCGCCCTCGGCGGCGTCGGATCGCACCCCGCTGCTGGATCC 120 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 CCACGTCCTCCACCCGCGCAACCTCGACCTCGCCTTCTCCCGCCGCGACTCCGACGCCGC 180 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 CAGCCTCTGCAGCAGCCGGCCGTCCTCCATCGGCACGGGCCCTTCGTTCGCCGCCCCCGT 240 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 CACCAACTTCTCCGACAGGGCCTCCCAGGCGGCCGCCCTCCGCGTCGTCAACGCCTACCT 300 consensus_3931#1 --------------------------------------------TCGTCAACGCCTACCT 16 **************** consensus_3931#0 CGCCCCCGCCGTCAGCCTCCGCCCGCCTCTCCCCTCCGCCAAGGACATCGTCGCCGCCTT 360 consensus_3931#1 CGCCCCCGCCGTCAGCCTCCGCCCGCCTCTCCCCTCCGCCAAGGACATCGTCGCCGCCTT 76 ************************************************************ consensus_3931#0 CCGCTGCCCCTTCAAGCTCACCCGCTCCGCCCTC-AAGGCCCCCGGCACCCCGCACTCCT 419 consensus_3931#1 CCGCCACCTCTTCGAGTGCCTCGACTTCCCCCTCCANGGCGCGTTCGAGGACGACCTCCT 136 **** ** **** ** * * ** * ***** * *** * * ** ***** consensus_3931#0 GGCCGCCGCTCCTCTCCGTCCTCTACTGGCTCACCCTCCTCGTCAACTCCAGTGAGAGCG 479 consensus_3931#1 CTTCG----TCCTCCGCGTCCTCCGCTGCCCCTTCAAGCTCACCCGCTCCGCCCTCAAGG 192 ** ***** ******* *** * * * *** * **** * * consensus_3931#0 GCGCCGGCGGCGACGACTCTCCTGCCGCCTCAAATGACCTCATGCTCTACATTACCAACA 539 consensus_3931#1 CCCCCG------------------------------------------------------ 198 * *** consensus_3931#0 GCTACTCGCTGTTCATCTCTGGGGACGATGATTCGGTCGCGTCTCTCGACGAGGAGTACT 599 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 CCTCCAAAGCCCGTGCACATGCGCAGGCAGCCGTCGAGGCCTCACAGGCGCTGGAGAAGG 659 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 AGGCACTGGATCTGGAGTCCAAGAGGACTAAGCTCACCTCAGGACCCTCGCGGCTGGAGG 719 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 CACTGCAGGCAGAGAAGGAGGCCCTCACTGCCGACGTGGAGAAATTTGAAGCGGTTGTGA 779 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 AGAGTTGGACAGTGAAGATACAGGAGAAGGAAGAGTCATCTGTACATTTGGAGAAGGAAT 839 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 TGGAGGCCAAGCTGATGGATCAACAGCGGATAGCAGCTGAAAACGAGGAGCTGATGAAGA 899 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 AGGTGGACGCACAGGTTGTGAATGTGAGAGATGTCGATCGGATGCAGAGGGAGATCCAGT 959 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 CAGTGGAGCGTGACAATGTCAAGTTGGAGAATGGGAATGCGACATTGGAGGAGAAGGGTT 1019 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 GGGAGCTCGAAGCTGCGGTGGTTGGGAAGCTTGAGGAGATTGAGGGACTTGTGGAGCAGT 1079 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 GCAACCAGGCCCTCAGAAAATTGAAACCTGGTATTGATTTCCAGTACATGCTAAACACAA 1139 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 AAGCGTCCTCCCCGGTTGAACTGCTAGGAACCAGTTACAAAACTATTATGAAACCTGCAC 1199 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 TCAATTCTCTTGCTGACGAGGCTAGAAGGATATCCATCTTAAAGCATGATGAGTCAGTTG 1259 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 AGCTAGAAAAACAGTCACAACGAAATGCTAAAATTCTGTCTGAGAAAAAGAACCATATTT 1319 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 CAGTTTGTCAGACCAAAACTGATGAGATGGTTGCTCGATTGGATTCACTGGATGTTGAAA 1379 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 TTGGGAATCATGTTTCAAGATGTAAGGCTGATGCTAGACTAATGAAAGATGAGCTGGAGA 1439 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 AAAAGGATCACCACCTGAGTACTGTTGAGAAGGAGTCAGAAGAATTTTTAAAGATCTCCG 1499 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 AAAAGAAGCTTGAAGATGCAAAAAGGGAAACTGATGAAGAAATTCAGATGTGCGCCAGAG 1559 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 AACTGCTGAAACTTATTGATTCGGTTACAGAGTACAAAGAGTTCATGGAAACATCAATAT 1619 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 CTGGGATGAGGAAAGACCTTTATGAAACCGTCGACGACATCTCTTCTTTGGCATCCAAGG 1679 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 CAGCATCTACCCGCCAAACTTCTGCTCAGTTTGTAATGTGATTATGTGAAGAAAGCTCTT 1739 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 CACGGAAGTGTTAGCTCCCAAGTGATCTCTTCCTTCCTACGCCTGAGATATTTATACCTC 1799 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 TTGGAGCTCTTGTACGCATGTGCCATCCTGTTAATATAAACTAGGTGAGTATTCCTTAGA 1859 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 TTGCAATGGAAATAGGATATTATTTGCTTTCCAACTCTTGTGCATGTTGATTAAAATAGA 1919 consensus_3931#1 ------------------------------------------------------------ consensus_3931#0 AATGTTTTTGTTGGGCCTGC 1939 consensus_3931#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||