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Oryza sativa
cluster # 3934 cluster # 3934       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3934#0 length = 2420 sequences # 3  

consensusID : consensus_3934#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2420
fasta sequence
                              [TTGGAAAGCATTAGGGAGACGAAGAGACTATCCACTCCGTCCGATGCGCACCCCTCCGACCTCCTTCTGGAGCACGCTTCCTTCCCCTGCAAGTTCCCGCCATTTCTCTCCCCAACCCCACTCTGTCACCCCGCTCGATTCCCCACTATTAATTTACTAATTAAATCATCACAAACAATCCTCTCCCAAACCCCTTCCATTTACACCAAACCGCCCCCTTCGCGCCGCCGCCGCCGCCGCCGCCGACATGCCTCGCCGCGGCGCGTCCTCCGCTTCCACCGTCATACAGTGGGCGCAGGAGATCGAGCGGCACACGGCCAAAGACAGCGTGCGCGTGCTGGTGTACCACGGCGGCCGGCGGGGTGCTCAGAAGTATGATTTCAACAAGTACGACTTCGTGATCACCACCTACTCCACCATCGAGGCGGACTACCGGAAGCACATCATGCCACCCAAGACTCGGTGCTGCTACTGTGATAAATTGTTTTACCCCAACAAGCTGAAGGTGCATTTGAGGTATTACTGTGGTCCTGATGCTCAGCGAACCGAGAAGCAGGCCAAACAGGAGAGCCGGAAATGGGGTAGCAAAAAGGGGACATCGAAGAGGAGGGTCCAAAAGAAGAAAAATGATAGTGATGGTGAGGATTTTGAGGAACGTGATGGGGGATCGGGGAGCCAATCAAGGGGTCAGTCACCTCTACACTCAGTGCGGTGGGAGCGTATTATTTTGGATGAGGCTCACTTCATAAAAGACAGACGTTGCAATACAGCCAAGGCTATTTTTGCATTAGAATCGGAATACAAGTGGGCTCTGAGTGGGACACCTTTGCAGAATCGTGTTGGAGAACTCTACTCGCTGATCCGTTTTTTGCAAATATTTCCTTACTCGGACTATTTCTGCAAGGACTGCAACTGCGAGATACTAGATACCCTTCTAAAGAAACAATGTGATTGTGGTCACTCATCTGTCAGGCATTTTTGCTGGTGGAACAAGTATATATCAAAACCAATACAATTTGGATCAGCAAGTTTTGAAGGCAAAAGAGCCATGGTTCTTCTAAAGGAAAAGGTTCTGAAGGGCATAGTGTTAAGGCGCACGAAAAAAGGAAGAGCTGCAGATCTTGCCCTCCCGCCAAAGATTGTGACCTTAAGGAGGGACTCTTTCGATAAAAATGAAATGGAATTCTACGAAGCTTTATATACTCAGAGTCGCACGCAATTTGATTCATATGTTGATGCTGGGACGCTGATGAACAACTATGCACATATCTTTGACCTCCTAACAAGGTTGAGACAGGCTGTTGATCATCCATATCTTGTGGCATTTTCTAAGACAGCAGAACTCAGTGACAGAAGTAAAAATGAAGGAAATGAGAACATGGAAAGCCAGTGTGGTATATGCCATGATATGACAGAAGATGCTGTGGTTACCTCTTGTGAACATGTATTCTGCAAGAATTGTTTGATAGACTACTCTGCAACTTTGGGGAATGTTTCATGTCCATCTTGTTCAGTGCCCCTTACTGTCGACCTAACAACACGAAGTTCTGGAGAAAAGGTCACTCCAAATTTGAAGGGTGGCAAACGCTCAGGAATATTAAGCAGACTACAAAACCTTGCAGATTCTAAGACAAGCACAAAAATCGATGCCTTGAGAGAAGAGATAAGAAACATGGTTGAGCATGATGGTTCCGCCAAAGGGATTGTGTTCAGCCAGTTCACATCATTCTTGGATTTGATTGAATTCTCCCTGCAGAAGTCTGGTATCAAGTGCGTGCAACTTAATGGCAAAATGAACATTGTTGAGAAGGGGAAAGCTATAGATACCTTCACCAATGATCCAGACTGCAGGATTTTTCTGATGAGCTTGAAAGCTGGAGGAGTAGCTCTCAATCTCACTGTGGCATCACATGTTTTCTTGATGGACCCTTGGTGGAATCCTGCAGTCGAGAGTCAGGCCCAGGATCGAATCCACCGAATTGGGCAGTTCAAGCCAATCAGAAGCATGA-GGTTTGTGATCAAGGACACCGTTGAGGAGCGTATACTGCAGCTGCAAGAGAAGAAGCGACTGGTGTTTGAAGGCACCGTTGGCGACTCACCTGAGGCCATGTCCAAGCTTACAGAGGCTGATCTCAAGTTCTTGTTCCAGAACTGATTCTCCCCCAATAGGTGATTACTCCCTGTGTAGGCGTAGCCTAGGATTAGTTACTGACATGTTAGGGGGGCCATGACCATGACAGATTGACAGTGCGCGCCAGTTGTAAAGGTGCTCGCATAGTCGCACTGCGGGTTCGCATGTCCTCTTGGGTCTGTGGCTACAGAGGGGTGAAACCAGGGCGTCGCGTTCTTGTTGAATCTTTGCAAGAACAAAATACGGAGTAGCTGATAGTTTGCCTTTTTTGATAGAAATAGGTTTCCGG]

[+] EMBL AK066772             [TTGGAAAGCATTAGGGAGACGAAGAGACTATCCACTCCGTCCGATGCGCACCCCTCCGACCTCCTTCTGGAGCACGCTTCCTTCCCCTGCAAGTTCCCGCCATTTCTCTCCCCAACCCCACTCTGTCACCCCGCTCGATTCCCCACTATTAATTTACTAATTAAATCATCACAAACAATCCTCTCCCAAACCCCTTCCATTTACACCAAACCGCCCCCTTCGCGCCGCCGCCGCCGCCGCCGCCGACATGCCTCGCCGCGGCGCGTCCTCCGCTTCCACCGTCATACAGTGGGCGCAGGAGATCGAGCGGCACACGGCCAAAGACAGCGTGCGCGTGCTGGTGTACCACGGCGGCCGGCGGGGTGCTCAGAAGTATGATTTCAACAAGTACGACTTCGTGATCACCACCTACTCCACCATCGAGGCGGACTACCGGAAGCACATCATGCCACCCAAGACTCGGTGCTGCTACTGTGATAAATTGTTTTACCCCAACAAGCTGAAGGTGCATTTGAGGTATTACTGTGGTCCTGATGCTCAGCGAACCGAGAAGCAGGCCAAACAGGAGAGCCGGAAATGGGGTAGCAAAAAGGGGACATCGAAGAGGAGGGTCCAAAAGAAGAAAAATGATAGTGATGGTGAGGATTTTGAGGAACGTGATGGGGGATCGGGGAGCCAATCAAGGGGTCAGTCACCTCTACACTCAGTGCGGTGGGAGCGTATTATTTTGGATGAGGCTCACTTCATAAAAGACAGACGTTGCAATACAGCCAAGGCTATTTTTGCATTAGAATCGGAATACAAGTGGGCTCTGAGTGGGACACCTTTGCAGAATCGTGTTGGAGAACTCTACTCGCTGATCCGTTTTTTGCAAATATTTCCTTACTCGGACTATTTCTGCAAGGACTGCAACTGCGAGATACTAGATACCCTTCTAAAGAAACAATGTGATTGTGGTCACTCATCTGTCAGGCATTTTTGCTGGTGGAACAAGTATATATCAAAACCAATACAATTTGGATCAGCAAGTTTTGAAGGCAAAAGAGCCATGGTTCTTCTAAAGGAAAAGGTTCTGAAGGGCATAGTGTTAAGGCGCACGAAAAAAGGAAGAGCTGCAGATCTTGCCCTCCCGCCAAAGATTGTGACCTTAAGGAGGGACTCTTTCGATAAAAATGAAATGGAATTCTACGAAGCTTTATATACTCAGAGTCGCACGCAATTTGATTCATATGTTGATGCTGGGACGCTGATGAACAACTATGCACATATCTTTGACCTCCTAACAAGGTTGAGACAGGCTGTTGATCATCCATATCTTGTGGCATTTTCTAAGACAGCAGAACTCAGTGACAGAAGTAAAAATGAAGGAAATGAGAACATGGAAAGCCAGTGTGGTATATGCCATGATATGACAGAAGATGCTGTGGTTACCTCTTGTGAACATGTATTCTGCAAGAATTGTTTGATAGACTACTCTGCAACTTTGGGGAATGTTTCATGTCCATCTTGTTCAGTGCCCCTTACTGTCGACCTAACAACACGAAGTTCTGGAGAAAAGGTCACTCCAAATTTGAAGGGTGGCAAACGCTCAGGAATATTAAGCAGACTACAAAACCTTGCAGATTCTAAGACAAGCACAAAAATCGATGCCTTGAGAGAAGAGATAAGAAACATGGTTGAGCATGATGGTTCCGCCAAAGGGATTGTGTTCAGCCAGTTCACATCATTCTTGGATTTGATTGAATTCTCCCTGCAGAAGTCTGGTATCAAGTGCGTGCAACTTAATGGCAAAATGAACATTGTTGAGAAGGGGAAAGCTATAGATACCTTCACCAATGATCCAGACTGCAGGATTTTTCTGATGAGCTTGAAAGCTGGAGGAGTAGCTCTCAATCTCACTGTGGCATCACATGTTTTCTTGATGGACCCTTGGTGGAATCCTGCAGTCGAGAGTCAGGCCCAGGATCGAATCCACCGAATTGGGCAGTTCAAGCCAATCAGAAGCATGA GGTTTGTGATCAAGGACACCGTTGAGGAGCGTATACTGCAGCTGCAAGAGAAGAAGCGACTGGTGTTTGAAGGCACCGTTGGCGACTCACCTGAGGCCATGTCCAAGCTTACAGAGGCTGATCTCAAGTTCTTGTTCCAGAACTGATTCTCCCCCAATAGGTGATTACTCCCTGTGTAGGCGTAGCCTAGGATTAGTTACTGACATGTTAGGGGGGCCATGACCATGACAGATTGACAGTGCGCGCCAGTTGTAAAGGTGCTCGCATAGTCGCACTGCGGGTTCGCATGTCCTCTTGGGTCTGTGGCTACAGAGGGGTGAAACCAGGGCGTCGCGTTCTTGTTGAATCTTTGCAAGAACAAAATACGGAGTAGCTGATAGTTTGC                          ]
[+] EMBL CF322857             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAACACGAAGTTCTGGAGAAAAGGTCACTCCAAATTTGAAGGGTGGCAAACGCTCAGGAATATTAAGCAGACTACAAAACCTTGCAGATTTTAAGACAAGCACAAAAATCGATGCCTTGAGAGAAGAGATAAGAAACATGGTTGAGCATGATGGTTCCGCCAAAGGGATTGTGTTCAGCCAGTTCACATCATTCTTGGATTTGATTGAATTCTCCCTGCAGAAGTCTGGTATCAAGTGCGTGCAACTTAATGGCAAAATGAACATTGTTGAGAAGGGGAAAGCTATAGATACCTTCACCAATGATCCAGACTGCAGGATTTTTCTGATGAGCTTGAAAGCTGGAGGAGTAGCTCTCAATCTCACTGTGGCATCACATGTTTTCTTGATGGACCCTTGGTGGAATCCTGCAGTCGAGAGTCAGGCCCAGGATCGAATCCACCGAATTGGGCAGTTCAAGCCAATCAGAAGCATGAGGGTTTGTGATCAAGGACACCGTTGAGGAGCGTATACTG                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK119665             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTTCACCAATGATCCAGACTGCAGGATTTTTCTGATGAGCTTGAAAGCTGGAGGAGTAGCTCTCAATCTCACTGTGGCATCACATGTTTTCTTGATGGACCCTTGGTGGAATCCTGCAGTCGAGAGTCAGGCCCAGGATCGAATCCACCGAATTGGGCAGTTCAAGCCAATCAGAAGCATGA GGTTTGTGATCAAGGACACCGTTGAGGAGCGTATACTGCAGCTGCAAGAGAAGAAGCGACTGGTGTTTGAAGGCACCGTTGGCGACTCACCTGAGGCCATGTCCAAGCTTACAGAGGCTGATCTCAAGTTCTTGTTCCAGAACTGATTCTCCCCCAATAGGTGATTACTCCCTGTGTAGGCGTAGCCTAGGATTAGTTACTGACATGTTAGGGGGGCCATGACCATGACAGATTGACAGTGCGCGCCAGTTGTAAAGGTGCTCGCATAGTCGCACTGCGGGTTCGCATGTCCTCTTGGGTCTGTGGCTACAGAGGGGTGAAACCAGGGCGTCGCGTTCTTGTTGAATCTTTGCAAGAACAAAATACGGAGTAGCTGATAGTTTGCCTTTTTTGATAGAAATAGGTTTCCGG]


>consensus_3934#0 TTGGAAAGCATTAGGGAGACGAAGAGACTATCCACTCCGTCCGATGCGCACCCCTCCGAC CTCCTTCTGGAGCACGCTTCCTTCCCCTGCAAGTTCCCGCCATTTCTCTCCCCAACCCCA CTCTGTCACCCCGCTCGATTCCCCACTATTAATTTACTAATTAAATCATCACAAACAATC CTCTCCCAAACCCCTTCCATTTACACCAAACCGCCCCCTTCGCGCCGCCGCCGCCGCCGC CGCCGACATGCCTCGCCGCGGCGCGTCCTCCGCTTCCACCGTCATACAGTGGGCGCAGGA GATCGAGCGGCACACGGCCAAAGACAGCGTGCGCGTGCTGGTGTACCACGGCGGCCGGCG GGGTGCTCAGAAGTATGATTTCAACAAGTACGACTTCGTGATCACCACCTACTCCACCAT CGAGGCGGACTACCGGAAGCACATCATGCCACCCAAGACTCGGTGCTGCTACTGTGATAA ATTGTTTTACCCCAACAAGCTGAAGGTGCATTTGAGGTATTACTGTGGTCCTGATGCTCA GCGAACCGAGAAGCAGGCCAAACAGGAGAGCCGGAAATGGGGTAGCAAAAAGGGGACATC GAAGAGGAGGGTCCAAAAGAAGAAAAATGATAGTGATGGTGAGGATTTTGAGGAACGTGA TGGGGGATCGGGGAGCCAATCAAGGGGTCAGTCACCTCTACACTCAGTGCGGTGGGAGCG TATTATTTTGGATGAGGCTCACTTCATAAAAGACAGACGTTGCAATACAGCCAAGGCTAT TTTTGCATTAGAATCGGAATACAAGTGGGCTCTGAGTGGGACACCTTTGCAGAATCGTGT TGGAGAACTCTACTCGCTGATCCGTTTTTTGCAAATATTTCCTTACTCGGACTATTTCTG CAAGGACTGCAACTGCGAGATACTAGATACCCTTCTAAAGAAACAATGTGATTGTGGTCA CTCATCTGTCAGGCATTTTTGCTGGTGGAACAAGTATATATCAAAACCAATACAATTTGG ATCAGCAAGTTTTGAAGGCAAAAGAGCCATGGTTCTTCTAAAGGAAAAGGTTCTGAAGGG CATAGTGTTAAGGCGCACGAAAAAAGGAAGAGCTGCAGATCTTGCCCTCCCGCCAAAGAT TGTGACCTTAAGGAGGGACTCTTTCGATAAAAATGAAATGGAATTCTACGAAGCTTTATA TACTCAGAGTCGCACGCAATTTGATTCATATGTTGATGCTGGGACGCTGATGAACAACTA TGCACATATCTTTGACCTCCTAACAAGGTTGAGACAGGCTGTTGATCATCCATATCTTGT GGCATTTTCTAAGACAGCAGAACTCAGTGACAGAAGTAAAAATGAAGGAAATGAGAACAT GGAAAGCCAGTGTGGTATATGCCATGATATGACAGAAGATGCTGTGGTTACCTCTTGTGA ACATGTATTCTGCAAGAATTGTTTGATAGACTACTCTGCAACTTTGGGGAATGTTTCATG TCCATCTTGTTCAGTGCCCCTTACTGTCGACCTAACAACACGAAGTTCTGGAGAAAAGGT CACTCCAAATTTGAAGGGTGGCAAACGCTCAGGAATATTAAGCAGACTACAAAACCTTGC AGATTCTAAGACAAGCACAAAAATCGATGCCTTGAGAGAAGAGATAAGAAACATGGTTGA GCATGATGGTTCCGCCAAAGGGATTGTGTTCAGCCAGTTCACATCATTCTTGGATTTGAT TGAATTCTCCCTGCAGAAGTCTGGTATCAAGTGCGTGCAACTTAATGGCAAAATGAACAT TGTTGAGAAGGGGAAAGCTATAGATACCTTCACCAATGATCCAGACTGCAGGATTTTTCT GATGAGCTTGAAAGCTGGAGGAGTAGCTCTCAATCTCACTGTGGCATCACATGTTTTCTT GATGGACCCTTGGTGGAATCCTGCAGTCGAGAGTCAGGCCCAGGATCGAATCCACCGAAT TGGGCAGTTCAAGCCAATCAGAAGCATGAGGTTTGTGATCAAGGACACCGTTGAGGAGCG TATACTGCAGCTGCAAGAGAAGAAGCGACTGGTGTTTGAAGGCACCGTTGGCGACTCACC TGAGGCCATGTCCAAGCTTACAGAGGCTGATCTCAAGTTCTTGTTCCAGAACTGATTCTC CCCCAATAGGTGATTACTCCCTGTGTAGGCGTAGCCTAGGATTAGTTACTGACATGTTAG GGGGGCCATGACCATGACAGATTGACAGTGCGCGCCAGTTGTAAAGGTGCTCGCATAGTC GCACTGCGGGTTCGCATGTCCTCTTGGGTCTGTGGCTACAGAGGGGTGAAACCAGGGCGT CGCGTTCTTGTTGAATCTTTGCAAGAACAAAATACGGAGTAGCTGATAGTTTGCCTTTTT TGATAGAAATAGGTTTCCGG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)