|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3936#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 945 fasta sequence
[CGCGGCCACGTCCACCCCAACCTCCCCTTCCGCCGATGCCGGAGCGCCGCCACCTCGCCGGAGACTCACCGTGCTGGTGATCATCCTCCGGACAACCCACCATGGAGCGCCTCCTGCACTTCCGGCCCCCGAAACCGACCTCTGCCAATGCCGTTGCAGCGGCGGCTACCGCCGACGGCGACCTCCTCGAGCTCGACGTGCTCTGGCCTGCATCCCGCGCCCCGGGCCTCCTCGCGGCGCTCCCTGAGGAGGACGGGAAGCGGAGGAGGAAGCGCGGCGGGAGCGGGAGCGGGAGCGTGGCCGTCCGATCCGCGGCGCGGCCTATCCCGGAGACCGCCGCGTTGACCCTGGTCCCGTCGTCGTCCGCGGCGGCGATGGCGAAGTCGGCGCCGGTGAGGATACCGTCGGAGGCGGCGGCGGCGCGTAGGGGGGTGATGTGGGCGGCGCAGGCGGGCGGCGAGGACGGGGAGGCGGCCATGGTCCCGCCCCACGAGATCGTGGCGCGGCGCGCCGCGGCGCACAGCTCGGTGCTGGAGGGCTCCGGGAGGACGCTCAAGGGGCGCGACCTCCACCGCGTCCGCAACGCCGTCCTCCGCCGCACCGGCTTCCTCGACTGAGGCGAAGAATAAACGGCTTATGATGCTTACCTTCGGCGCTAAATAGTTGTGACAGCACTCTTGGGGGGACCATTGCCCCTCAGCAACACAATTCCTATAAGGAAACATATGGTATGCTCACTGCTCAGTTCACCTCATAGGTCTAGAACTTCTTGCTATCCCTTGGTTTTTTACGTAATAGAGGGAGTAGTTATGTTGCTTCGTAACCAAAACTTGGGTGTTTGTGGTTATGGTAAAGGAGTTATGTACACATTTTTGTGTGTTTTCCTGGCTTTGATTTATTGTTTTATCAATCCTCTCTTACCAAGGTTTTATTCAGACTATCTGA]
[+] EMBL AK072969 [CGCGGCCACGTCCACCCCAACCTCCCCTTCCGCCGATGCCGGAGCGCCGCCACCTCGCCGGAGACTCACCGTGCTGGTGATCATCCTCCGGACAACCCACCATGGAGCGCCTCCTGCACTTCCGGCCCCCGAAACCGACCTCTGCCAATGCCGTTGCAGCGGCGGCTACCGCCGACGGCGACCTCCTCGAGCTCGACGTGCTCTGGCCTGCATCCCGCGCCCCGGGCCTCCTCGCGGCGCTCCCTGAGGAGGACGGGAAGCGGAGGAGGAAGCGCGGCGGGAGCGGGAGCGGGAGCGTGGCCGTCCGATCCGCGGCGCGGCCTATCCCGGAGACCGCCGCGTTGACCCTGGTCCCGTCGTCGTCCGCGGCGGCGATGGCGAAGTCGGCGCCGGTGAGGATACCGTCGGAGGCGGCGGCGGCGCGTAGGGGGGTGATGTGGGCGGCGCAGGCGGGCGGCGAGGACGGGGAGGCGGCCATGGTCCCGCCCCACGAGATCGTGGCGCGGCGCGCCGCGGCGCACAGCTCGGTGCTGGAGGGCTCCGGGAGGACGCTCAAGGGGCGCGACCTCCACCGCGTCCGCAACGCCGTCCTCCGCCGCACCGGCTTCCTCGACTGAGGCGAAGAATAAACGGCTTATGATGCTTACCTTCGGCGCTAAATAGTTGTGACAGCACTCTTGGGGGGACCATTGCCCCTCAGCAACACAATTCCTATAAGGAAACATATGGTATGCTCACTGCTCAGTTCACCTCATAGGTCTAGAACTTCTTGCTATCCCTTGGTTTTTTACGTAATAGAGGGAGTAGTTATGTTGCTTCGTAACCAAAACTTGGGTGTTTGTGGTTATGGTAAAGGAGTTATGTACACATTTTTGTGTGTTTTCCTGGCTTTGATTTATTGTTTTATCAATCCTCTCTTACCAAGGTTTTATTCAGACTATCTGA]
consensusID : consensus_3936#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 785 fasta sequence
[ACCTCGTTGCAATCGCTGGTCGCCGCCGCCGCCGCAGCCGTCGACGGCGAAGGGGAGATCAGAGCCAAAGGATTGATCCGTGGCTGCTCCGTGGGGGGCGATGGCGATGCCGCGGTCGCCGGGCGCGGGCTCGCTCCGGTTTCTTGGCCTCCTGAAGCAGCCGGAGTCGGGGCCCGACGGCGCGGCGCCGCCGTTCGAGCTCGACGAGAGCGACGTGGTGTGGCCGGCCGGCGGTGTCGGGGACGACGGTTACTGCTGCCCGGCGCCGCCACACCCGGAGGGCCCACCGCGCGCGCCCCGCCGCGCCCACACGGTGCCGCAGAGCTTCGGGCTGTCGTCGCTGCTCGCCAACGGGGGGCGCGGCGGCGGCAGCGACGACGGGCGTCAGGATGGAGTGGCCGTGCCCGTGAGGGCCGCGGCGGCGCCGGGTGGAGGCGCCGCGGCACCGAGGCGGTCGGCACCGGTGAGGGTCCCGATGTGGCCGGGCAAGGGCGCCGCCGCCAACAACGTCGTCGGCGGCGAGGAGTCCGACGACAACGAGGACGACGAGATGGGGCCGCCGCACGTGGTGGCGGCGCGGCGGCACGCGCGGTCGTCGTCGGTGCTGGAGGGCGCCGGGAGGACGCTCAAGGGGCGCGACCTCCGCCGCGTCCGCAACGCCGTGCTCCGGCAGACCGGATTCCTCGACCTCTGAAGAATCCAAAGCATCCCATCGCCATCATCATATCTTGATTAGCCATTTCTCATCATCAGTTTTCCGGTGTGACTAAAAAAAAAAACTTTGT]
[+] EMBL AK107900 [ACCTCGTTGCAATCGCTGGTCGCCGCCGCCGCCGCAGCCGTCGACGGCGAAGGGGAGATCAGAGCCAAAGGATTGATCCGTGGCTGCTCCGTGGGGGGCGATGGCGATGCCGCGGTCGCCGGGCGCGGGCTCGCTCCGGTTTCTTGGCCTCCTGAAGCAGCCGGAGTCGGGGCCCGACGGCGCGGCGCCGCCGTTCGAGCTCGACGAGAGCGACGTGGTGTGGCCGGCCGGCGGTGTCGGGGACGACGGTTACTGCTGCCCGGCGCCGCCACACCCGGAGGGCCCACCGCGCGCGCCCCGCCGCGCCCACACGGTGCCGCAGAGCTTCGGGCTGTCGTCGCTGCTCGCCAACGGGGGGCGCGGCGGCGGCAGCGACGACGGGCGTCAGGATGGAGTGGCCGTGCCCGTGAGGGCCGCGGCGGCGCCGGGTGGAGGCGCCGCGGCACCGAGGCGGTCGGCACCGGTGAGGGTCCCGATGTGGCCGGGCAAGGGCGCCGCCGCCAACAACGTCGTCGGCGGCGAGGAGTCCGACGACAACGAGGACGACGAGATGGGGCCGCCGCACGTGGTGGCGGCGCGGCGGCACGCGCGGTCGTCGTCGGTGCTGGAGGGCGCCGGGAGGACGCTCAAGGGGCGCGACCTCCGCCGCGTCCGCAACGCCGTGCTCCGGCAGACCGGATTCCTCGACCTCTGAAGAATCCAAAGCATCCCATCGCCATCATCATATCTTGATTAGCCATTTCTCATCATCAGTTTTCCGGTGTGACTAAAAAAAAAAACTTTGT]
[+] EMBL AK119700 [ACCTCGTTGCAATCGCTGGTCGCCGCCGCCGCCGCAGCCGTCGACGGCGAAGGGGAGATCAGAGCCAAAGGATTGATCCGTGGCTGCTCCGTGGGGGGCGATGGCGATGCCGCGGTCGCCGGGCGCGGGCTCGCTCCGGTTTCTTGGCCTCCTGAAGCAGCCGGAGTCGGGGCCCGACGGCGCGGCGCCGCCGTTCGAGCTCGACGAGAGCGACGTGGTGTGGCCGGCCGGCGGTGTCGGGGACGACGGTTACTGCTGCCCGGCGCCGCCACACCCGGAGGGCCCACCGCGCGCGCCCCGCCGCGCCCACACGGTGCCGCAGAGCTTCGGGCTGTCGTCGCTGCTCGCCAACGGGGGGCGCGGCGGCGGCAGCGACGACGGGCGTCAGGATGGAGTGGCCGTGCCCGTGAGGGCCGCGGCGGCGCCGGGTGGAGGCGCCGCGGCACCGAGGCGGTCGGCACCGGTGAGGGTCCCGATGTGGCCGGGCAAGGGCGCCGCCGCCAACAACGTCGTCGGCGGCGAGGAGTCCGACGACAACGAGGACGACGAGATGGTGCCGCCGCACGTGGTGGCGGCGCGGCGGCACGCGCGGTCGTCGTCGGTGCTGGAGGGCGCCGGGAGGACGCTCAAGGGGCGCGACCTCCGCCGCGTCCGCAACGCCGTGCTCCGGCAGACCGGATTCCTCGACCTCTGAAGAATCCAAAGCATCCCATCGCCATCATCATATCTTGATTAGCCATTTCTCATCATCAGTTTTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3936#0 -----------------------------------------------------------C 1
consensus_3936#1 ACCTCGTTGCAATCGCTGGTCGCCGCCGCCGCCGCAGCCGTCGACGGCGAAGGGGAGATC 60
*
consensus_3936#0 GCGGCCACG---TCCACCCCAACCTCCCCTTCCGC---CGATGCCGGAGCGCCGCCACCT 55
consensus_3936#1 AGAGCCAAAGGATTGATCCGTGGCTGCTCCGTGGGGGGCGATGGCGATGCCGCGGTCGCC 120
**** * * ** ** * * * ***** ** ** ** *
consensus_3936#0 CGCCGGAGACTCACCGTGCTGGTGATCATCCTCCGGACAACCCACCATGGAGCGCCTCCT 115
consensus_3936#1 GGGCGCGGGCTCGCTCCGGTT-TCTTGGCCTCCTGAAGCAGCCGGAGTCGGGGCCCGACG 179
* ** * *** * * * * * * * * * * ** * * * ** *
consensus_3936#0 GCAC--TTCCGGCCCCCGAAACCGACCTCTGCCA-ATGCCGTTGCAG--CGGCGGCTACC 170
consensus_3936#1 GCGCGGCGCCGCCGTTCGAGCTCGACGAGAGCGACGTGGTGTGGCCGGCCGGCGGTGTCG 239
** * *** * *** **** ** * ** ** ** * ****** *
consensus_3936#0 GC--CGACGGCGAC--CTCCTCGAGCTCGACGTGCTCTG---GCCTGCATCCCGCGCCCC 223
consensus_3936#1 GGGACGACGGTTACTGCTGCCCGGCGCCGCCACACCCGGAGGGCCCACCGCGCGCGCCCC 299
* ****** ** ** * ** ** * * * * *** * * ********
consensus_3936#0 GG-GCCTCCTCGCGGCGCTCCCTGAGGAGGACGGGAAGCGGAGGAGGAAGCGCGGCGGGA 282
consensus_3936#1 GCCGCGCCCACACGGTGCCGCAGAGCTTCGGGCTGTCGTCGCTGCTCGCCAACGGGGGGC 359
* ** ** * *** ** * * * * * * *** ***
consensus_3936#0 GCGGGAGCGGGAGCGTGGCCGTCCGATCCG-CGGCGCGGCCTATCCCGGAGACCGCCGCG 341
consensus_3936#1 GCGGCGGCGGCAGCGACGACGGGCGTCAGGATGGAGTGGCC-GTGCCCGTGAGGGCCGCG 418
**** **** **** * ** ** * ** * **** * ** * ** ******
consensus_3936#0 TTGACCCTGGTCCCGTCGTCGTCCGCGGCGGCGATGGCGAAGTCGGCGCCGGTGAGGATA 401
consensus_3936#1 GCGGCGCCGG----GTGGAGG--CGCCGCGGCACCGAGGCGGTCGGCACCGGTGAGGGTC 472
* * * ** ** * * *** ***** * * ****** ********* *
consensus_3936#0 CCGTCGGAGGCGG-CGGCGGCGCGTAGGGGGGTGATGTGGGCGGCGCAGGCGGG--CGGC 458
consensus_3936#1 CCGATGTGGCCGGGCAAGGGCGCCGCCGCCAACAACGTCGTCGGCGGCGAGGAGTCCGAC 532
*** * * *** * ***** * * ** * ***** * * * ** *
consensus_3936#0 GAGGACGGGGAGGCGGCCATGGTCCCGCCCCACGAGATCGTGGCGCGGCGCGCCGCGGCG 518
consensus_3936#1 GACAACGAGGACGACGAGATGGGGCCGCCGCACGTGGTGGCGGCGCGGCGGCACGCGCGG 592
** *** *** * * **** ***** **** * * * ********* **** *
consensus_3936#0 CACAGCTCGGTGCTGGAGGGCTCCGGGAGGACGCTCAAGGGGCGCGACCTCCACCGCGTC 578
consensus_3936#1 TCGTCGTCGGTGCTGGAGGGCGCCGGGAGGACGCTCAAGGGGCGCGACCTCCGCCGCGTC 652
*************** ****************************** *******
consensus_3936#0 CGCAACGCCGTCCTCCGCCGCACCGGCTTCCTCGACTGAGGCGAAGAATAAACGGCTTAT 638
consensus_3936#1 CGCAACGCCGTGCTCCGGCAGACCGGATTCCTCGACCTC--TGAAGAATCCAAAGCATCC 710
*********** ***** * ***** ********* ******* * ** *
consensus_3936#0 GATGCTTACCTTCG-GCGCTAAATAGTTGTGACAGCACTCTTGGGGGGACCATTGCCCCT 697
consensus_3936#1 CATCGCCATCATCATATCTTGATTAGCCATTTC--TCATCATCAGTTTTCCGGTGTGACT 768
** * * ** * * *** * * ** * * ** ** **
consensus_3936#0 CAGCAACACAATTCCTATAAGGAAACATATGGTATGCTCACTGCTCAGTTCACCTCATAG 757
consensus_3936#1 AAAAAAAAAAACTT-TGT------------------------------------------ 785
* ** * ** * * *
consensus_3936#0 GTCTAGAACTTCTTGCTATCCCTTGGTTTTTTACGTAATAGAGGGAGTAGTTATGTTGCT 817
consensus_3936#1 ------------------------------------------------------------
consensus_3936#0 TCGTAACCAAAACTTGGGTGTTTGTGGTTATGGTAAAGGAGTTATGTACACATTTTTGTG 877
consensus_3936#1 ------------------------------------------------------------
consensus_3936#0 TGTTTTCCTGGCTTTGATTTATTGTTTTATCAATCCTCTCTTACCAAGGTTTTATTCAGA 937
consensus_3936#1 ------------------------------------------------------------
consensus_3936#0 CTATCTGA 945
consensus_3936#1 --------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||