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Oryza sativa
cluster # 3944 cluster # 3944       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3944#0 length = 796 sequences # 1  
consensus_3944#1 length = 522 sequences # 1  
consensus_3944#2 length = 393 sequences # 1  

consensusID : consensus_3944#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 796
fasta sequence
                              [TCGGTATATAAGCCCCAGATTTCGAATTCCTCTCTGCGGCTGCGCTTTGCTCCTCCCCTCAATCCTCCTCTCCGCTCTCGCTCTCAGTCTCAGATCAGGAGGGAGGGGATCGATATTCGATCATCGATGGCCACCTTCGAGCTGTACCGGAGGTCCACCATCGGTATGTGCCTCACCGACACGCTGGACGACATGGTCTCCAGTGGGGCGCTCAGCCCCGAGCTCGCCATCCAAGTCCTCGTGCAGTTTGACAAGTCCATGACTAGCGCTTTGGAGCATCAGGTGAAGAGCAAGGTTACTGTCAAGGGCCATCTGCACACCTACAGGTTCTGCGACAATGTGTGGACTTTCATCCTAACAGATGCAATTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTGGCCTGCGATTCCAAATTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCTTCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTCGCTCGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGGTGAGTGATGGACCGATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACCTAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAACAGGATGGTCANATTACCTTGGTN]

[+] EMBL CB097192             [TCGGTATATAAGCCCCAGATTTCGAATTCCTCTCTGCGGCTGCGCTTTGCTCCTCCCCTCAATCCTCCTCTCCGCTCTCGCTCTCAGTCTCAGATCAGGAGGGAGGGGATCGATATTCGATCATCGATGGCCACCTTCGAGCTGTACCGGAGGTCCACCATCGGTATGTGCCTCACCGACACGCTGGACGACATGGTCTCCAGTGGGGCGCTCAGCCCCGAGCTCGCCATCCAAGTCCTCGTGCAGTTTGACAAGTCCATGACTAGCGCTTTGGAGCATCAGGTGAAGAGCAAGGTTACTGTCAAGGGCCATCTGCACACCTACAGGTTCTGCGACAATGTGTGGACTTTCATCCTAACAGATGCAATTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTGGCCTGCGATTCCAAATTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCTTCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTCGCTCGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGGTGAGTGATGGACCGATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACCTAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAACAGGATGGTCANATTACCTTGGTN]


>consensus_3944#0 TCGGTATATAAGCCCCAGATTTCGAATTCCTCTCTGCGGCTGCGCTTTGCTCCTCCCCTC AATCCTCCTCTCCGCTCTCGCTCTCAGTCTCAGATCAGGAGGGAGGGGATCGATATTCGA TCATCGATGGCCACCTTCGAGCTGTACCGGAGGTCCACCATCGGTATGTGCCTCACCGAC ACGCTGGACGACATGGTCTCCAGTGGGGCGCTCAGCCCCGAGCTCGCCATCCAAGTCCTC GTGCAGTTTGACAAGTCCATGACTAGCGCTTTGGAGCATCAGGTGAAGAGCAAGGTTACT GTCAAGGGCCATCTGCACACCTACAGGTTCTGCGACAATGTGTGGACTTTCATCCTAACA GATGCAATTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTGGCC TGCGATTCCAAATTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCTT CTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTCGCTC GTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTTC TGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGGTGAGTGATGGACCG ATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACCT AATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAACAGGATGG TCANATTACCTTGGTN



consensusID : consensus_3944#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence
                              [GAGCATCAGGTGAAGAGCCAAGGTTACTGTCAAGGCCATCTGCACACCTACAGGTTCTGCGACATGTGTGGACTTTCATCCTAACAGATCAATTTTCAAGAACGAAGAGATTACAGAGACCATAAACAAGGTGAAGATCGTGGCCTGCGATTCCAATTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCTTCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTGGTTCGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGTTGAGTGATGGACCGATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACCTAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAACCAGGATGTTCAGATTTAAAAAAAAA]

[+] EMBL BI800890             [GAGCATCAGGTGAAGAGCCAAGGTTACTGTCAAGGCCATCTGCACACCTACAGGTTCTGCGACATGTGTGGACTTTCATCCTAACAGATCAATTTTCAAGAACGAAGAGATTACAGAGACCATAAACAAGGTGAAGATCGTGGCCTGCGATTCCAATTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCTTCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTGGTTCGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGTTGAGTGATGGACCGATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACCTAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAACCAGGATGTTCAGATTTAAAAAAAAA]


>consensus_3944#1 GAGCATCAGGTGAAGAGCCAAGGTTACTGTCAAGGCCATCTGCACACCTACAGGTTCTGC GACATGTGTGGACTTTCATCCTAACAGATCAATTTTCAAGAACGAAGAGATTACAGAGAC CATAAACAAGGTGAAGATCGTGGCCTGCGATTCCAATTGCTGGAGACTAAAGAAGAGTAA TTTGCGGAAGAGCCCATCCTGCTTCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATA ATCTTGCATCTGTTTTCCTGGTTCGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTA CTAGAGTATCATGTTCATAGTTTCTGTCTGCCATCCGCATCACTCATGGATCGATTTCTC TCTTCTCTGTTGAGTGATGGACCGATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGT GTGACATGAGTGTGCTCTGTACCTAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGA ATTCTAAATCTTTGAACCAGGATGTTCAGATTTAAAAAAAAA



consensusID : consensus_3944#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence
                              [GGCTCCCATCCAAGTCTCGCCAGTTGACAAGTCCATGACTAGCCTTTGGACCATCAGTAAGACCAAGGTTACTGTCAAGGCCATCTGCACACTACAGGTTCTGCGACATGTGTGGACTTTCATCCTAACAGATGCATTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTGCCTGCGATTCCAATTGCTGGAGACTAAAGAAGAGTAATTTCCGGAAGACCCCATCCTGCTTCTCTTGATGCTCCAGACCTGGCCACCTGAAATATAATCTGCATCTGTTTTCCGGCTCGTATCATGAATCGCCCAGTTCCCAGGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCCCCACCCCCCACCACTCAGGGATCGA]

[+] EMBL BI798012             [GGCTCCCATCCAAGTCTCGCCAGTTGACAAGTCCATGACTAGCCTTTGGACCATCAGTAAGACCAAGGTTACTGTCAAGGCCATCTGCACACTACAGGTTCTGCGACATGTGTGGACTTTCATCCTAACAGATGCATTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTGCCTGCGATTCCAATTGCTGGAGACTAAAGAAGAGTAATTTCCGGAAGACCCCATCCTGCTTCTCTTGATGCTCCAGACCTGGCCACCTGAAATATAATCTGCATCTGTTTTCCGGCTCGTATCATGAATCGCCCAGTTCCCAGGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCCCCACCCCCCACCACTCAGGGATCGA]


>consensus_3944#2 GGCTCCCATCCAAGTCTCGCCAGTTGACAAGTCCATGACTAGCCTTTGGACCATCAGTAA GACCAAGGTTACTGTCAAGGCCATCTGCACACTACAGGTTCTGCGACATGTGTGGACTTT CATCCTAACAGATGCATTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAG ATCGTGCCTGCGATTCCAATTGCTGGAGACTAAAGAAGAGTAATTTCCGGAAGACCCCAT CCTGCTTCTCTTGATGCTCCAGACCTGGCCACCTGAAATATAATCTGCATCTGTTTTCCG GCTCGTATCATGAATCGCCCAGTTCCCAGGGTAGGAGTACTAGAGTATCATGTTCATAGT TTCTGTCCCCACCCCCCACCACTCAGGGATCGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3944#0      TCGGTATATAAGCCCCAGATTTCGAATTCCTCTCTGCGGCTGCGCTTTGCTCCTCCCCTC 60
consensus_3944#1      ------------------------------------------------------------
consensus_3944#2      ------------------------------------------------------------
                                                                                  

consensus_3944#0      AATCCTCCTCTCCGCTCTCGCTCTCAGTCTCAGATCAGGAGGGAGGGGATCGATATTCGA 120
consensus_3944#1      ------------------------------------------------------------
consensus_3944#2      ------------------------------------------------------------
                                                                                  

consensus_3944#0      TCATCGATGGCCACCTTCGAGCTGTACCGGAGGTCCACCATCGGTATGTGCCTCACCGAC 180
consensus_3944#1      ------------------------------------------------------------
consensus_3944#2      ------------------------------------------------------------
                                                                                  

consensus_3944#0      ACGCTGGACGACATGGTCTCCAGTGGGGCGCTCAGCCCCGAGCTCGCCATCCAAGTCCTC 240
consensus_3944#1      ------------------------------------------------------------
consensus_3944#2      ------------------------------------------------GGCTCCCATCCA 12
                                                                                  

consensus_3944#0      GTGCAGTTTGACAAGTCCATGACTAGCGCTTTGGAGCATCAGGTGAAGAGC-AAGGTTAC 299
consensus_3944#1      ---------------------------------GAGCATCAGGTGAAGAGCCAAGGTTAC 27
consensus_3944#2      AGTCTCGCCAGTTGACAAGTCCATGACTAGCCTTTGGACCATCAGTAAGACCAAGGTTAC 72
                                                         * * **   * *   * ********

consensus_3944#0      TGTCAAGGGCCATCTGCACACCTACAGGTTCTGCGACAATGTGTGGACTTTCATCCTAAC 359
consensus_3944#1      TGTCAAGG-CCATCTGCACACCTACAGGTTCTGCGACA-TGTGTGGACTTTCATCCTAAC 85
consensus_3944#2      TGTCAAGG-CCATCTGCACAC-TACAGGTTCTGCGACA-TGTGTGGACTTTCATCCTAAC 129
                      ******** ************ **************** *********************

consensus_3944#0      AGATGCAATTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTGGC 419
consensus_3944#1      AGAT-CAATTTTCAAGAACGAAGAGATTACAGAGACCATAAACAAGGTGAAGATCGTGGC 144
consensus_3944#2      AGATGCA-TTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTG-C 187
                      **** ** **************************** ********************* *

consensus_3944#0      CTGCGATTCCAAATTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCT 479
consensus_3944#1      CTGCGATTCCAA-TTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCT 203
consensus_3944#2      CTGCGATTCCAA-TTGCTGGAGACTAAAGAAGAGTAATTTCCGGAAGACCCCATCCTGCT 246
                      ************ *************************** ******* ***********

consensus_3944#0      TCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTCGCT 539
consensus_3944#1      TCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTGGTT 263
consensus_3944#2      TCTCTTGATGCTCCAGACCTGGC-CACCTGAAATATAATCT-GCATCTGTTTTCC-GGCT 303
                      ************ ********** ***************** *************  * *

consensus_3944#0      CGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTT 599
consensus_3944#1      CGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTT 323
consensus_3944#2      CGTATCATGAATC-GCCCAGTTCCCAGGGTAGGAGTACTAGAGTATCATGTTCATAGTTT 362
                      ************* *  ***** *** *********************************

consensus_3944#0      CTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGGTGAGTGATGGACC 659
consensus_3944#1      CTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGTTGAGTGATGGACC 383
consensus_3944#2      CTGTCCCCACCCCCCACCACTCAGGGATCGA----------------------------- 393
                      *****  *   ** ** ****** *******                             

consensus_3944#0      GATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACC 719
consensus_3944#1      GATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACC 443
consensus_3944#2      ------------------------------------------------------------
                                                                                  

consensus_3944#0      TAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAAC-AGGAT 778
consensus_3944#1      TAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAACCAGGAT 503
consensus_3944#2      ------------------------------------------------------------
                                                                                  

consensus_3944#0      GGTCANATTACCTTGGTN- 796
consensus_3944#1      GTTCAGATTTAAAAAAAAA 522
consensus_3944#2      -------------------
                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)