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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3944#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence
[TCGGTATATAAGCCCCAGATTTCGAATTCCTCTCTGCGGCTGCGCTTTGCTCCTCCCCTCAATCCTCCTCTCCGCTCTCGCTCTCAGTCTCAGATCAGGAGGGAGGGGATCGATATTCGATCATCGATGGCCACCTTCGAGCTGTACCGGAGGTCCACCATCGGTATGTGCCTCACCGACACGCTGGACGACATGGTCTCCAGTGGGGCGCTCAGCCCCGAGCTCGCCATCCAAGTCCTCGTGCAGTTTGACAAGTCCATGACTAGCGCTTTGGAGCATCAGGTGAAGAGCAAGGTTACTGTCAAGGGCCATCTGCACACCTACAGGTTCTGCGACAATGTGTGGACTTTCATCCTAACAGATGCAATTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTGGCCTGCGATTCCAAATTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCTTCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTCGCTCGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGGTGAGTGATGGACCGATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACCTAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAACAGGATGGTCANATTACCTTGGTN]
[+] EMBL CB097192 [TCGGTATATAAGCCCCAGATTTCGAATTCCTCTCTGCGGCTGCGCTTTGCTCCTCCCCTCAATCCTCCTCTCCGCTCTCGCTCTCAGTCTCAGATCAGGAGGGAGGGGATCGATATTCGATCATCGATGGCCACCTTCGAGCTGTACCGGAGGTCCACCATCGGTATGTGCCTCACCGACACGCTGGACGACATGGTCTCCAGTGGGGCGCTCAGCCCCGAGCTCGCCATCCAAGTCCTCGTGCAGTTTGACAAGTCCATGACTAGCGCTTTGGAGCATCAGGTGAAGAGCAAGGTTACTGTCAAGGGCCATCTGCACACCTACAGGTTCTGCGACAATGTGTGGACTTTCATCCTAACAGATGCAATTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTGGCCTGCGATTCCAAATTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCTTCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTCGCTCGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGGTGAGTGATGGACCGATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACCTAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAACAGGATGGTCANATTACCTTGGTN]
consensusID : consensus_3944#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence
[GAGCATCAGGTGAAGAGCCAAGGTTACTGTCAAGGCCATCTGCACACCTACAGGTTCTGCGACATGTGTGGACTTTCATCCTAACAGATCAATTTTCAAGAACGAAGAGATTACAGAGACCATAAACAAGGTGAAGATCGTGGCCTGCGATTCCAATTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCTTCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTGGTTCGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGTTGAGTGATGGACCGATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACCTAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAACCAGGATGTTCAGATTTAAAAAAAAA]
[+] EMBL BI800890 [GAGCATCAGGTGAAGAGCCAAGGTTACTGTCAAGGCCATCTGCACACCTACAGGTTCTGCGACATGTGTGGACTTTCATCCTAACAGATCAATTTTCAAGAACGAAGAGATTACAGAGACCATAAACAAGGTGAAGATCGTGGCCTGCGATTCCAATTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCTTCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTGGTTCGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGTTGAGTGATGGACCGATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACCTAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAACCAGGATGTTCAGATTTAAAAAAAAA]
consensusID : consensus_3944#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[GGCTCCCATCCAAGTCTCGCCAGTTGACAAGTCCATGACTAGCCTTTGGACCATCAGTAAGACCAAGGTTACTGTCAAGGCCATCTGCACACTACAGGTTCTGCGACATGTGTGGACTTTCATCCTAACAGATGCATTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTGCCTGCGATTCCAATTGCTGGAGACTAAAGAAGAGTAATTTCCGGAAGACCCCATCCTGCTTCTCTTGATGCTCCAGACCTGGCCACCTGAAATATAATCTGCATCTGTTTTCCGGCTCGTATCATGAATCGCCCAGTTCCCAGGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCCCCACCCCCCACCACTCAGGGATCGA]
[+] EMBL BI798012 [GGCTCCCATCCAAGTCTCGCCAGTTGACAAGTCCATGACTAGCCTTTGGACCATCAGTAAGACCAAGGTTACTGTCAAGGCCATCTGCACACTACAGGTTCTGCGACATGTGTGGACTTTCATCCTAACAGATGCATTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTGCCTGCGATTCCAATTGCTGGAGACTAAAGAAGAGTAATTTCCGGAAGACCCCATCCTGCTTCTCTTGATGCTCCAGACCTGGCCACCTGAAATATAATCTGCATCTGTTTTCCGGCTCGTATCATGAATCGCCCAGTTCCCAGGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCCCCACCCCCCACCACTCAGGGATCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3944#0 TCGGTATATAAGCCCCAGATTTCGAATTCCTCTCTGCGGCTGCGCTTTGCTCCTCCCCTC 60
consensus_3944#1 ------------------------------------------------------------
consensus_3944#2 ------------------------------------------------------------
consensus_3944#0 AATCCTCCTCTCCGCTCTCGCTCTCAGTCTCAGATCAGGAGGGAGGGGATCGATATTCGA 120
consensus_3944#1 ------------------------------------------------------------
consensus_3944#2 ------------------------------------------------------------
consensus_3944#0 TCATCGATGGCCACCTTCGAGCTGTACCGGAGGTCCACCATCGGTATGTGCCTCACCGAC 180
consensus_3944#1 ------------------------------------------------------------
consensus_3944#2 ------------------------------------------------------------
consensus_3944#0 ACGCTGGACGACATGGTCTCCAGTGGGGCGCTCAGCCCCGAGCTCGCCATCCAAGTCCTC 240
consensus_3944#1 ------------------------------------------------------------
consensus_3944#2 ------------------------------------------------GGCTCCCATCCA 12
consensus_3944#0 GTGCAGTTTGACAAGTCCATGACTAGCGCTTTGGAGCATCAGGTGAAGAGC-AAGGTTAC 299
consensus_3944#1 ---------------------------------GAGCATCAGGTGAAGAGCCAAGGTTAC 27
consensus_3944#2 AGTCTCGCCAGTTGACAAGTCCATGACTAGCCTTTGGACCATCAGTAAGACCAAGGTTAC 72
* * ** * * * ********
consensus_3944#0 TGTCAAGGGCCATCTGCACACCTACAGGTTCTGCGACAATGTGTGGACTTTCATCCTAAC 359
consensus_3944#1 TGTCAAGG-CCATCTGCACACCTACAGGTTCTGCGACA-TGTGTGGACTTTCATCCTAAC 85
consensus_3944#2 TGTCAAGG-CCATCTGCACAC-TACAGGTTCTGCGACA-TGTGTGGACTTTCATCCTAAC 129
******** ************ **************** *********************
consensus_3944#0 AGATGCAATTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTGGC 419
consensus_3944#1 AGAT-CAATTTTCAAGAACGAAGAGATTACAGAGACCATAAACAAGGTGAAGATCGTGGC 144
consensus_3944#2 AGATGCA-TTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTG-C 187
**** ** **************************** ********************* *
consensus_3944#0 CTGCGATTCCAAATTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCT 479
consensus_3944#1 CTGCGATTCCAA-TTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCT 203
consensus_3944#2 CTGCGATTCCAA-TTGCTGGAGACTAAAGAAGAGTAATTTCCGGAAGACCCCATCCTGCT 246
************ *************************** ******* ***********
consensus_3944#0 TCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTCGCT 539
consensus_3944#1 TCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTGGTT 263
consensus_3944#2 TCTCTTGATGCTCCAGACCTGGC-CACCTGAAATATAATCT-GCATCTGTTTTCC-GGCT 303
************ ********** ***************** ************* * *
consensus_3944#0 CGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTT 599
consensus_3944#1 CGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTT 323
consensus_3944#2 CGTATCATGAATC-GCCCAGTTCCCAGGGTAGGAGTACTAGAGTATCATGTTCATAGTTT 362
************* * ***** *** *********************************
consensus_3944#0 CTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGGTGAGTGATGGACC 659
consensus_3944#1 CTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGTTGAGTGATGGACC 383
consensus_3944#2 CTGTCCCCACCCCCCACCACTCAGGGATCGA----------------------------- 393
***** * ** ** ****** *******
consensus_3944#0 GATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACC 719
consensus_3944#1 GATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACC 443
consensus_3944#2 ------------------------------------------------------------
consensus_3944#0 TAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAAC-AGGAT 778
consensus_3944#1 TAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAACCAGGAT 503
consensus_3944#2 ------------------------------------------------------------
consensus_3944#0 GGTCANATTACCTTGGTN- 796
consensus_3944#1 GTTCAGATTTAAAAAAAAA 522
consensus_3944#2 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||