These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3944#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence [TCGGTATATAAGCCCCAGATTTCGAATTCCTCTCTGCGGCTGCGCTTTGCTCCTCCCCTCAATCCTCCTCTCCGCTCTCGCTCTCAGTCTCAGATCAGGAGGGAGGGGATCGATATTCGATCATCGATGGCCACCTTCGAGCTGTACCGGAGGTCCACCATCGGTATGTGCCTCACCGACACGCTGGACGACATGGTCTCCAGTGGGGCGCTCAGCCCCGAGCTCGCCATCCAAGTCCTCGTGCAGTTTGACAAGTCCATGACTAGCGCTTTGGAGCATCAGGTGAAGAGCAAGGTTACTGTCAAGGGCCATCTGCACACCTACAGGTTCTGCGACAATGTGTGGACTTTCATCCTAACAGATGCAATTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTGGCCTGCGATTCCAAATTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCTTCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTCGCTCGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGGTGAGTGATGGACCGATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACCTAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAACAGGATGGTCANATTACCTTGGTN] [+] EMBL CB097192 [TCGGTATATAAGCCCCAGATTTCGAATTCCTCTCTGCGGCTGCGCTTTGCTCCTCCCCTCAATCCTCCTCTCCGCTCTCGCTCTCAGTCTCAGATCAGGAGGGAGGGGATCGATATTCGATCATCGATGGCCACCTTCGAGCTGTACCGGAGGTCCACCATCGGTATGTGCCTCACCGACACGCTGGACGACATGGTCTCCAGTGGGGCGCTCAGCCCCGAGCTCGCCATCCAAGTCCTCGTGCAGTTTGACAAGTCCATGACTAGCGCTTTGGAGCATCAGGTGAAGAGCAAGGTTACTGTCAAGGGCCATCTGCACACCTACAGGTTCTGCGACAATGTGTGGACTTTCATCCTAACAGATGCAATTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTGGCCTGCGATTCCAAATTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCTTCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTCGCTCGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGGTGAGTGATGGACCGATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACCTAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAACAGGATGGTCANATTACCTTGGTN] consensusID : consensus_3944#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [GAGCATCAGGTGAAGAGCCAAGGTTACTGTCAAGGCCATCTGCACACCTACAGGTTCTGCGACATGTGTGGACTTTCATCCTAACAGATCAATTTTCAAGAACGAAGAGATTACAGAGACCATAAACAAGGTGAAGATCGTGGCCTGCGATTCCAATTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCTTCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTGGTTCGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGTTGAGTGATGGACCGATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACCTAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAACCAGGATGTTCAGATTTAAAAAAAAA] [+] EMBL BI800890 [GAGCATCAGGTGAAGAGCCAAGGTTACTGTCAAGGCCATCTGCACACCTACAGGTTCTGCGACATGTGTGGACTTTCATCCTAACAGATCAATTTTCAAGAACGAAGAGATTACAGAGACCATAAACAAGGTGAAGATCGTGGCCTGCGATTCCAATTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCTTCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTGGTTCGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGTTGAGTGATGGACCGATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACCTAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAACCAGGATGTTCAGATTTAAAAAAAAA] consensusID : consensus_3944#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [GGCTCCCATCCAAGTCTCGCCAGTTGACAAGTCCATGACTAGCCTTTGGACCATCAGTAAGACCAAGGTTACTGTCAAGGCCATCTGCACACTACAGGTTCTGCGACATGTGTGGACTTTCATCCTAACAGATGCATTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTGCCTGCGATTCCAATTGCTGGAGACTAAAGAAGAGTAATTTCCGGAAGACCCCATCCTGCTTCTCTTGATGCTCCAGACCTGGCCACCTGAAATATAATCTGCATCTGTTTTCCGGCTCGTATCATGAATCGCCCAGTTCCCAGGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCCCCACCCCCCACCACTCAGGGATCGA] [+] EMBL BI798012 [GGCTCCCATCCAAGTCTCGCCAGTTGACAAGTCCATGACTAGCCTTTGGACCATCAGTAAGACCAAGGTTACTGTCAAGGCCATCTGCACACTACAGGTTCTGCGACATGTGTGGACTTTCATCCTAACAGATGCATTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTGCCTGCGATTCCAATTGCTGGAGACTAAAGAAGAGTAATTTCCGGAAGACCCCATCCTGCTTCTCTTGATGCTCCAGACCTGGCCACCTGAAATATAATCTGCATCTGTTTTCCGGCTCGTATCATGAATCGCCCAGTTCCCAGGGTAGGAGTACTAGAGTATCATGTTCATAGTTTCTGTCCCCACCCCCCACCACTCAGGGATCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3944#0 TCGGTATATAAGCCCCAGATTTCGAATTCCTCTCTGCGGCTGCGCTTTGCTCCTCCCCTC 60 consensus_3944#1 ------------------------------------------------------------ consensus_3944#2 ------------------------------------------------------------ consensus_3944#0 AATCCTCCTCTCCGCTCTCGCTCTCAGTCTCAGATCAGGAGGGAGGGGATCGATATTCGA 120 consensus_3944#1 ------------------------------------------------------------ consensus_3944#2 ------------------------------------------------------------ consensus_3944#0 TCATCGATGGCCACCTTCGAGCTGTACCGGAGGTCCACCATCGGTATGTGCCTCACCGAC 180 consensus_3944#1 ------------------------------------------------------------ consensus_3944#2 ------------------------------------------------------------ consensus_3944#0 ACGCTGGACGACATGGTCTCCAGTGGGGCGCTCAGCCCCGAGCTCGCCATCCAAGTCCTC 240 consensus_3944#1 ------------------------------------------------------------ consensus_3944#2 ------------------------------------------------GGCTCCCATCCA 12 consensus_3944#0 GTGCAGTTTGACAAGTCCATGACTAGCGCTTTGGAGCATCAGGTGAAGAGC-AAGGTTAC 299 consensus_3944#1 ---------------------------------GAGCATCAGGTGAAGAGCCAAGGTTAC 27 consensus_3944#2 AGTCTCGCCAGTTGACAAGTCCATGACTAGCCTTTGGACCATCAGTAAGACCAAGGTTAC 72 * * ** * * * ******** consensus_3944#0 TGTCAAGGGCCATCTGCACACCTACAGGTTCTGCGACAATGTGTGGACTTTCATCCTAAC 359 consensus_3944#1 TGTCAAGG-CCATCTGCACACCTACAGGTTCTGCGACA-TGTGTGGACTTTCATCCTAAC 85 consensus_3944#2 TGTCAAGG-CCATCTGCACAC-TACAGGTTCTGCGACA-TGTGTGGACTTTCATCCTAAC 129 ******** ************ **************** ********************* consensus_3944#0 AGATGCAATTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTGGC 419 consensus_3944#1 AGAT-CAATTTTCAAGAACGAAGAGATTACAGAGACCATAAACAAGGTGAAGATCGTGGC 144 consensus_3944#2 AGATGCA-TTTTCAAGAACGAAGAGATTACAGAGACAATAAACAAGGTGAAGATCGTG-C 187 **** ** **************************** ********************* * consensus_3944#0 CTGCGATTCCAAATTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCT 479 consensus_3944#1 CTGCGATTCCAA-TTGCTGGAGACTAAAGAAGAGTAATTTGCGGAAGAGCCCATCCTGCT 203 consensus_3944#2 CTGCGATTCCAA-TTGCTGGAGACTAAAGAAGAGTAATTTCCGGAAGACCCCATCCTGCT 246 ************ *************************** ******* *********** consensus_3944#0 TCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTCGCT 539 consensus_3944#1 TCTCTTGATGCTGCAGACCTGGCGCACCTGAAATATAATCTTGCATCTGTTTTCCTGGTT 263 consensus_3944#2 TCTCTTGATGCTCCAGACCTGGC-CACCTGAAATATAATCT-GCATCTGTTTTCC-GGCT 303 ************ ********** ***************** ************* * * consensus_3944#0 CGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTT 599 consensus_3944#1 CGTATCATGAATCTGAACAGTTTCCATGGTAGGAGTACTAGAGTATCATGTTCATAGTTT 323 consensus_3944#2 CGTATCATGAATC-GCCCAGTTCCCAGGGTAGGAGTACTAGAGTATCATGTTCATAGTTT 362 ************* * ***** *** ********************************* consensus_3944#0 CTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGGTGAGTGATGGACC 659 consensus_3944#1 CTGTCTGCCATCCGCATCACTCATGGATCGATTTCTCTCTTCTCTGTTGAGTGATGGACC 383 consensus_3944#2 CTGTCCCCACCCCCCACCACTCAGGGATCGA----------------------------- 393 ***** * ** ** ****** ******* consensus_3944#0 GATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACC 719 consensus_3944#1 GATTTCTCTCCTCTGTTGATAATGAAGAGTGTGATGTGTGACATGAGTGTGCTCTGTACC 443 consensus_3944#2 ------------------------------------------------------------ consensus_3944#0 TAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAAC-AGGAT 778 consensus_3944#1 TAATCATGCTCTCGCCGAAGGCAGACCTAACATTTGAATTCTAAATCTTTGAACCAGGAT 503 consensus_3944#2 ------------------------------------------------------------ consensus_3944#0 GGTCANATTACCTTGGTN- 796 consensus_3944#1 GTTCAGATTTAAAAAAAAA 522 consensus_3944#2 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||