These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3947#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 592 fasta sequence [CCGCGCAAAGGAAAGGCACCCAAGAACCAAACCAAGTCGAAGCAGCGCCATTTCATCGAGCCGTCGCGACGCGCANAAACGAAGCAGCAGAGAGATCATGGCCATGGAGAGGTTCTTGACATCGCTGGTCTTCTGCGAGTGCGAGGCGCCTGGCATGGACGTCTTCGCCTACGCCGCCGGCACGTCGCTGACAGCCGCCGTGAACAAGGTCTCCACCGCCAGCCCCGGCGGCCGTGTCGTCGGGCCGGCGGTCTCGGCGGCGGCGCCATCATCGGAGGCTAAGAAGGANGCCGCCGGCAAGGCGCCGCGGCGGCTGCTGCAGGCGGCGTTACTCTCCGGCGTTCGATGGCCTCAACAGCTTCGAGACCATCGTGNATGACACTGATGATGATCATTGGATCACCCGAGAATGGATTATTGCCTTCGTNTTTGTGTTTAAGCTATGAGCAAGTACTACTAATATNCTTTCATTTGATTGNTGAAATATAANCAATTTTTAACCATGTAGTATTGTAAAAACATAGATTATCTTTGTTACTGATGGCCATTGTATATGATTGGTACTGAAGGATAAATTTTAGAGATCAAAAAA] [+] EMBL AU078045 [CCGCGCAAAGGAAAGGCACCCAAGAACCAAACCAAGTCGAAGCAGCGCCATTTCATCGAGCCGTCGCGACGCGCANAAACGAAGCAGCAGAGAGATCATGGCCATGGAGAGGTTCTTGACATCGCTGGTCTTCTGCGAGTGCGAGGCGCCTGGCATGGACGTCTTCGCCTACGCCGCCGGCACGTCGCTGACAGCCGCCGTGAACAAGGTCTCCACCGCCAGCCCCGGCGGCCGTGTCGTCGGGCCGGCGGTCTCGGCGGCGGCGCCATCATCGGAGGCTAAGAAGGANGCCGCCGGCAAGGCGCCGCGGCGGCTGCTGCAGGCGGCGTTACTCTCCGGCGTTCGATGGCCTCAACAGCTTCGAGACCATCGTGNATGACACTGATGATGATCATTGGATCACCCGAGAATGGATTATTGCCTTCGTNTTTGTGTTTAAGCTATGAGCAAGTACTACTAATATNCTTTCATTTGATTGNTGAAATATAANC ] [+] EMBL AU076248 [ AAACCAAGTCGAAGCAGCGCCATTTCATCGAGCCGTCGCGACGCGCAGAANCGAAGCAGCAGAGAGATCATGGCCATGGAGAGGTTCTTGACATCGCTGGTCTTCTGCGAGTGCGAGGCGCCTGGCATGGACGTCTTCGCCTACGCCGCCGGCACGTCGCTGACAGCCGCCGTGAACAAGGTCTCCACCGCCAGCCCCGGCGGCCGTGTCGTCGGGCCGGCGGTCTCGGCGGCGGCGCCATCATCGGAGGCTAAGAAGGACGCCGCCGGCAAGGCGCCGCGGCGGCTGCTGCAGGCGGCG TACTCTCCGGCGTTCGATGGCCTCAACAGCTTCGAGACCATCGTG ATG CACTGATGATGATCATT GATCACCCG GAAT GATTATTGCCTTCGTTTTTGTGTTTAAGCTAT AGCAAGTACTACTAATATTCTTTCATTTGATTGTTG AATATAATCAATTTTTAACCATGTAGTATTGTAAAAACATAGATTATCTTTGTTACTGATGGCCATTGTATATGATTGGTACTGAAGGATAAATTTTAGAGATCAAAAAA] consensusID : consensus_3947#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [CCTGGCATGGACGTCTTCGCCTACGCCGCCGGCACGTCGCTGACAGCCGCCGTGAACAAGGTCTCCACCGCCAGCCCCGGCGGCCGTGTCGTCGGGCCGGCGGTCTCGGCGGCGGCGCCATCATCGGAGGCTAAGAAGGACGCCGCCGGCAAGGCGCCGCGGCGGCTGCTGCAGGCGGCGTACTCTCCGGCGTTCGATGGCCTCAACAGCTTCGAGACCATCGTGATGCACTGATGATGATCATTGATCACCCGGAATGATTATTGCCTTCGTTTTTGTGTTTAAGCTATAGCAAGTACTACTAATATTCTTTCATTTGATTGTTGAATATAATCAATTTTTAACCATGTNGTNTTGTAAAAACATAAAAAAAAAAAAAAAA] [+] EMBL AU078046 [CCTGGCATGGACGTCTTCGCCTACGCCGCCGGCACGTCGCTGACAGCCGCCGTGAACAAGGTCTCCACCGCCAGCCCCGGCGGCCGTGTCGTCGGGCCGGCGGTCTCGGCGGCGGCGCCATCATCGGAGGCTAAGAAGGACGCCGCCGGCAAGGCGCCGCGGCGGCTGCTGCAGGCGGCGTACTCTCCGGCGTTCGATGGCCTCAACAGCTTCGAGACCATCGTGATGCACTGATGATGATCATTGATCACCCGGAATGATTATTGCCTTCGTTTTTGTGTTTAAGCTATAGCAAGTACTACTAATATTCTTTCATTTGATTGTTGAATATAATCAATTTTTAACCATGTNGTNTTGTAAAAACATAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3947#0 CCGCGCAAAGGAAAGGCACCCAAGAACCAAACCAAGTCGAAGCAGCGCCATTTCATCGAG 60 consensus_3947#1 ------------------------------------------------------------ consensus_3947#0 CCGTCGCGACGCGCANAAACGAAGCAGCAGAGAGATCATGGCCATGGAGAGGTTCTTGAC 120 consensus_3947#1 ------------------------------------------------------------ consensus_3947#0 ATCGCTGGTCTTCTGCGAGTGCGAGGCGCCTGGCATGGACGTCTTCGCCTACGCCGCCGG 180 consensus_3947#1 ----------------------------CCTGGCATGGACGTCTTCGCCTACGCCGCCGG 32 ******************************** consensus_3947#0 CACGTCGCTGACAGCCGCCGTGAACAAGGTCTCCACCGCCAGCCCCGGCGGCCGTGTCGT 240 consensus_3947#1 CACGTCGCTGACAGCCGCCGTGAACAAGGTCTCCACCGCCAGCCCCGGCGGCCGTGTCGT 92 ************************************************************ consensus_3947#0 CGGGCCGGCGGTCTCGGCGGCGGCGCCATCATCGGAGGCTAAGAAGGANGCCGCCGGCAA 300 consensus_3947#1 CGGGCCGGCGGTCTCGGCGGCGGCGCCATCATCGGAGGCTAAGAAGGACGCCGCCGGCAA 152 ************************************************ *********** consensus_3947#0 GGCGCCGCGGCGGCTGCTGCAGGCGGCGTTACTCTCCGGCGTTCGATGGCCTCAACAGCT 360 consensus_3947#1 GGCGCCGCGGCGGCTGCTGCAGGCGGCGT-ACTCTCCGGCGTTCGATGGCCTCAACAGCT 211 ***************************** ****************************** consensus_3947#0 TCGAGACCATCGTGNATGACACTGATGATGATCATTGGATCACCCGAGAATGGATTATTG 420 consensus_3947#1 TCGAGACCATCGTGAT--GCACTGATGATGATCATTG-ATCACCCG-GAATG-ATTATTG 266 ************** ****************** ******** ***** ******* consensus_3947#0 CCTTCGTNTTTGTGTTTAAGCTATGAGCAAGTACTACTAATATNCTTTCATTTGATTGNT 480 consensus_3947#1 CCTTCGTTTTTGTGTTTAAGCTAT-AGCAAGTACTACTAATATTCTTTCATTTGATTGTT 325 ******* **************** ****************** ************** * consensus_3947#0 GAAATATAANCAATTTTTAACCATGTAGTATTGTAAAAACATAGATTATCTTTGTTACTG 540 consensus_3947#1 GAA-TATAATCAATTTTTAACCATGTNGTNTTGTAAAAACATAAAAAAAAAAAAAAAA-- 382 *** ***** **************** ** ************* * * * consensus_3947#0 ATGGCCATTGTATATGATTGGTACTGAAGGATAAATTTTAGAGATCAAAAAA 592 consensus_3947#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||