These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1906 fasta sequence [GTTTTACCTGCAGATGCGAGCAGCCGCCGGCGGCGGCGGTCGGAGAGCGAGTGGAGGGGAGGATGCTGTGCCGCCGGCGGCGCGTGGGGGCGGCGGTGCGGTGGCTGTCGCGGCTGGCGCCGCCCGCGCCGGCGGAGGCGGACCCGGTGGTGGTCCGCGTGGACGGGAGCAACGTGGCCCGCCTCGGGAAGCCCAAGCCCGGCCCGAGGCCGCGGCAGCTGCTGTCGCTGCCGCCGTTCCCGGGCGGCGGGGTCGGCGACCCGCTCCCCGGGAGGAAGGCGGCGGCGCCGCGGCGGGTGACGGCGGTCAGCTGGGTGAAGCACTACCTCGCCGACGTGCCGCAGGAGGTCGTGCAGGCGCACTTCAACAAGAGGCTGGTTTATTCCGAGTGCTCAGATCATGAGGTTTCAGTTGAGACTATTAAGAACCAGAAGCATCATCTCAAGAAGATCAAGCATAATGATGTGATGGAGCCTGGCATGAGAATTCACCTTCCTGTGTCAGTGGCAGAGGGCGAGATTAAGAAGCGGTATGAGACCATTCCAACTGCCACATTGCATCCCAATAAAGATGAGATTGAATACTTGAGAAGGCTTGTCATACACAAGGATTCTGCCATACTTGTACTTAACAAGCCCCCAAAAGTGCCCATGAAGGGAAATTTGCCAGTGCATAACAGCATGGATGTGCTTGCAGCAGCAGCTCTGTCATATGGAAATGAAGAAGGTCCAAAATTGGTTCATCGACTGGACAGAGAAAGTAGTGGTTTGCTGTTGTTCGGGAGAACAAAAGAAAGCTTTACTCGATTGCATTGGCTTTTCACTAGCGTCAATTTAGCAAAAACGAATTCTCAGGTATGGAATGCTGCCTGTGAAGCATACATGCAGAGGTATTGGGCATTGGTGATTGGGACCCCTAAAGAAAGAGAAGGGATTATTTCTGCACCTCTTTCAAAGGTACTTCTTGATGATGGGAAAGCCGAGCGTGTCATTCTGGCACATCCATCTGGCATAGATGGTGCACAAGAAGCTGTAACAGCATATCGGGTGATGGGACCAACCATTCATGGGTGCTCATGGATTGAGCTACGCCCATTGACAGGCCGAAAGCATCAGCTCCGAGTACATTGTGCAGAAGCTCTAGGCACACCCATTGTCGGAGACTACAAGTACGGGTGGTTTGTGCACCAAAGGTGGAAGCAGAATCCCCAACCAGACTTTGAACCGTTTACTGGGGAGCCATACAAGCTGAGGCGCCCAGAAGGCTTGGAAATCCAGAAGGGCAGTGTTCTCTCTAAAGTCCCTCTGCTGCACCTGCATTGCCGGGAAATGGTCATCCCCAACATCGCGAAATTCCTGAGCAGCAATGGAGAATGGCATGAAAATGGTGCTCCATGGTCCAAGGAGAAGCCCAATCTCCTCAGGTTCATCGCACCGATGCCTGCACATATGAAAATTAGCTGGAATATCATGTCCTCATATCTGGTGTAAGAGCATCTCCATGTGCCATTGTTGGTAACATCAAGTTTCATTCCATGTAGTTTTACTGAGAAGCAGCTAGGCTTCTAGTTCATTATTTTCTAGATTCTATAGCTACATCTTCTCACAGTCTGGGTGAGAATCTGTTCTGCACTGCTTCGGGAGCCTAAGATTTTAGGATATAAGCTGCCGCTGCTAGAAGCTCAGCTCCCCCGAATAGTGCCATAGCTGTTTTTTTCAGGAATGCCAGATTGTAGCATCTGAACCATTGCAAAAGAAACAGTTGGTGTGAATATAGATCAATTTTCTAAGAGTATACATCCTACCAAAGTTTTAAATCTTTGTTTCTTTTTTGTAAGCATGATGTAATTCTGAACAATAATTACTGTACGTTGCAGCATTTTACTACTAATGAAATGCCACTGCTA] [+] EMBL AK120052 [GTTTTACCTGCAGATGCGAGCAGCCGCCGGCGGCGGCGGTCGGAGAGCGAGTGGAGGGGAGGATGCTGTGCCGCCGGCGGCGCGTGGGGGCGGCGGTGCGGTGGCTGTCGCGGCTGGCGCCGCCCGCGCCGGCGGAGGCGGACCCGGTGGTGGTCCGCGTGGACGGGAGCAACGTGGCCCGCCTCGGGAAGCCCAAGCCCGGCCCGAGGCCGCGGCAGCTGCTGTCGCTGCCGCCGTTCCCGGGCGGCGGGGTCGGCGACCCGCTCCCCGGGAGGAAGGCGGCGGCGCCGCGGCGGGTGACGGCGGTCAGCTGGGTGAAGCACTACCTCGCCGACGTGCCGCAGGAGGTCGTGCAGGCGCACTTCAACAAGAGGCTGGTTTATTCCGAGTGCTCAGATCATGAGGTTTCAGTTGAGACTATTAAGAACCAGAAGCATCATCTCAAGAAGATCAAGCATAATGATGTGATGGAGCCTGGCATGAGAATTCACCTTCCTGTGTCAGTGGCAGAGGGCGAGATTAAGAAGCGGTATGAGACCATTCCAACTGCCACATTGCATCCCAATAAAGATGAGATTGAATACTTGAGAAGGCTTGTCATACACAAGGATTCTGCCATACTTGTACTTAACAAGCCCCCAAAAGTGCCCATGAAGGGAAATTTGCCAGTGCATAACAGCATGGATGTGCTTGCAGCAGCAGCTCTGTCATATGGAAATGAAGAAGGTCCAAAATTGGTTCATCGACTGGACAGAGAAAGTAGTGGTTTGCTGTTGTTCGGGAGAACAAAAGAAAGCTTTACTCGATTGCATTGGCTTTTCACTAGCGTCAATTTAGCAAAAACGAATTCTCAGGTATGGAATGCTGCCTGTGAAGCATACATGCAGAGGTATTGGGCATTGGTGATTGGGACCCCTAAAGAAAGAGAAGGGATTATTTCTGCACCTCTTTCAAAGGTACTTCTTGATGATGGGAAAGCCGAGCGTGTCATTCTGGCACATCCATCTGGCATAGATGGTGCACAAGAAGCTGTAACAGCATATCGGGTGATGGGACCAACCATTCATGGGTGCTCATGGATTGAGCTACGCCCATTGACAGGCCGAAAGCATCAGCTCCGAGTACATTGTGCAGAAGCTCTAGGCACACCCATTGTCGGAGACTACAAGTACGGGTGGTTTGTGCACCAAAGGTGGAAGCAGAATCCCCAACCAGACTTTGAACCGTTTACTGGGGAGCCATACAAGCTGAGGCGCCCAGAAGGCTTGGAAATCCAGAAGGGCAGTGTTCTCTCTAAAGTCCCTCTGCTGCACCTGCATTGCCGGGAAATGGTCATCCCCAACATCGCGAAATTCCTGAGCAGCAATGGAGAATGGCATGAAAATGGTGCTCCATGGTCCAAGGAGAAGCCCAATCTCCTCAGGTTCATCGCACCGATGCCTGCACATATGAAAATTAGCTGGAATATCATGTCCTCATATCTGGTGTAAGAGCATCTCCATGTGCCATTGTTGGTAACATCAAGTTTCATTCCATGTAGTTTTACTGAGAAGCAGCTAGGCTTCTAGTTCATTATTTTCTAGATTCTATAGCTACATCTTCTCACAGTCTGGGTGAGAATCTGTTCTGCACTGCTTCGGGAGCCTAAGATTTTAGGATATAAGCTGCCGCTGCTAGAAGCTCAGCTCCCCCGAATAGTGCCATAGCTGTTTTTTTCAGGAATGCCAGATTGTAGCATCTGAACCATTGCAAAAGAAACAGTTGGTGTGAATATAGATCAATTTTCTAAGAGTATACATCCTACCAAAGTTTTAAATCTTTGTTTCTTTTTTGTAAGCATGATGTAATTCTGAACAATAATTACTGTACGTTGCAGCATTTTACTACTAATGAAATGCCACTGCTA] [+] EMBL AK059686 [ AGAAGCATCATCTCAAGAAGATCAAGCATAATGATGTGATGGAGCCTGGCATGAGAATTCACCTTCCTGTGTCAGTGGCAGAGGGCGAGATTAAGAAGCGGTATGAGACCATTCCAACTGCCACATTGCATCCCAATAAAGATGAGATTGAATACTTGAGAAGGCTTGTCATACACAAGGATTCTGCCATACTTGTACTTAACAAGCCCCCAAAAGTGCCCATGAAGGGAAATTTGCCAGTGCATAACAGCATGGATGTGCTTGCAGCAGCAGCTCTGTCATATGGAAATGAAGAAGGTCCAAAATTGGTTCATCGACTGGACAGAGAAAGTAGTGGTTTGCTGTTGTTCGGGAGAACAAAAGAAAGCTTTACTCGATTGCATTGGCTTTTCACTAGCGTCAATTTAGCAAAAACGAATTCTCAGGTATGGAATGCTGCCTGTGAAGCATACATGCAGAGGTATTGGGCATTGGTGATTGGGACCCCTAAAGAAAGAGAAGGGATTATTTCTGCACCTCTTTCAAAGGTACTTCTTGATGATGGGAAAGCCGAGCGTGTCATTCTGGCACATCCATCTGGCATAGATGGTGCACAAGAAGCTGTAACAGCATATCGGGTGATGGGACCAACCATTCATGGGTGCTCATGGATTGAGCTACGCCCATTGACAGGCCGAAAGCATCAGCTCCGAGTACATTGTGCAGAAGCTCTAGGCACACCCATTGTCGGAGACTACAAGTACGGGTGGTTTGTGCACCAAAGGTGGAAGCAGAATCCCCAACCAGACTTTGAACCGTTTACTGGGGAGCCATACAAGCTGAGGCGCCCAGAAGGCTTGGAAATCCAGAAGGGCAGTGTTCTCTCTAAAGTCCCTCTGCTGCACCTGCATTGCCGGGAAATGGTCATCCCCAACATCGCGAAATTCCTGAGCAGCAATGGAGAATGGCATGAAAATGGTGCTCCATGGTCCAAGGAGAAGCCCAATCTCCTCAGGTTCATCGCACCGATGCCTGCACATATGAAAATTAGCTGGAATATCATGTCCTCATATCTGGTGTAAGAGCATCTCCATGTGCCATTGTTGGTAACATCAAGTTTCATTCCATGTAGTTTTACTGAGAAGCAGCTAGGCTTCTAGTTCATTATTTTCTAGATTCTATAGCTACATCTTCTCACAGTCTGGGTGAGAATCTGTTCTGCACTGCTTCGGGAGCCTAAGATTTTAGGATATAAGCTGCCGCTGCTAGAAGCTCAGCTCCCCCGAATAGCGCCATAGCTGTTTTTTTCAGGAATGCCAGATTGTAGCATCTGAACCATTGCAAAAGAAACAGTTGGTGTGAATATAGATCAATTTTCTAAGAGTATACATCCTACCAAAGTTTTAAATCTTTGTTTCTTTTTTGTAAGCATGATGTAATTCTGAACAATAATTACTGTACGTTGCAGCATTTTACTACTAATGAAATGCCACTGCTA] consensusID : consensus_3969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence [GGGTGAGAATCTGTTCTGCACTGCTTCGGGAGCCTAAGATTTTAGGATATAAGCTGCCGCTGCTAGAAGCTCAGCTCCCCCGAATAGTGCCATAGCTGTTTTTTTCAGGAATGCCAGATTGTAGCATCTGAACCATTGCAAAAGAAACAGTTGGTGTGAATATAGATCAATTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF311982 [GGGTGAGAATCTGTTCTGCACTGCTTCGGGAGCCTAAGATTTTAGGATATAAGCTGCCGCTGCTAGAAGCTCAGCTCCCCCGAATAGTGCCATAGCTGTTTTTTTCAGGAATGCCAGATTGTAGCATCTGAACCATTGCAAAAGAAACAGTTGGTGTGAATATAGATCAATTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3969#0 GTTTTACCTGCAGATGCGAGCAGCCGCCGGCGGCGGCGGTCGGAGAGCGAGTGGAGGGGA 60 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 GGATGCTGTGCCGCCGGCGGCGCGTGGGGGCGGCGGTGCGGTGGCTGTCGCGGCTGGCGC 120 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 CGCCCGCGCCGGCGGAGGCGGACCCGGTGGTGGTCCGCGTGGACGGGAGCAACGTGGCCC 180 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 GCCTCGGGAAGCCCAAGCCCGGCCCGAGGCCGCGGCAGCTGCTGTCGCTGCCGCCGTTCC 240 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 CGGGCGGCGGGGTCGGCGACCCGCTCCCCGGGAGGAAGGCGGCGGCGCCGCGGCGGGTGA 300 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 CGGCGGTCAGCTGGGTGAAGCACTACCTCGCCGACGTGCCGCAGGAGGTCGTGCAGGCGC 360 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 ACTTCAACAAGAGGCTGGTTTATTCCGAGTGCTCAGATCATGAGGTTTCAGTTGAGACTA 420 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 TTAAGAACCAGAAGCATCATCTCAAGAAGATCAAGCATAATGATGTGATGGAGCCTGGCA 480 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 TGAGAATTCACCTTCCTGTGTCAGTGGCAGAGGGCGAGATTAAGAAGCGGTATGAGACCA 540 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 TTCCAACTGCCACATTGCATCCCAATAAAGATGAGATTGAATACTTGAGAAGGCTTGTCA 600 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 TACACAAGGATTCTGCCATACTTGTACTTAACAAGCCCCCAAAAGTGCCCATGAAGGGAA 660 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 ATTTGCCAGTGCATAACAGCATGGATGTGCTTGCAGCAGCAGCTCTGTCATATGGAAATG 720 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 AAGAAGGTCCAAAATTGGTTCATCGACTGGACAGAGAAAGTAGTGGTTTGCTGTTGTTCG 780 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 GGAGAACAAAAGAAAGCTTTACTCGATTGCATTGGCTTTTCACTAGCGTCAATTTAGCAA 840 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 AAACGAATTCTCAGGTATGGAATGCTGCCTGTGAAGCATACATGCAGAGGTATTGGGCAT 900 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 TGGTGATTGGGACCCCTAAAGAAAGAGAAGGGATTATTTCTGCACCTCTTTCAAAGGTAC 960 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 TTCTTGATGATGGGAAAGCCGAGCGTGTCATTCTGGCACATCCATCTGGCATAGATGGTG 1020 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 CACAAGAAGCTGTAACAGCATATCGGGTGATGGGACCAACCATTCATGGGTGCTCATGGA 1080 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 TTGAGCTACGCCCATTGACAGGCCGAAAGCATCAGCTCCGAGTACATTGTGCAGAAGCTC 1140 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 TAGGCACACCCATTGTCGGAGACTACAAGTACGGGTGGTTTGTGCACCAAAGGTGGAAGC 1200 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 AGAATCCCCAACCAGACTTTGAACCGTTTACTGGGGAGCCATACAAGCTGAGGCGCCCAG 1260 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 AAGGCTTGGAAATCCAGAAGGGCAGTGTTCTCTCTAAAGTCCCTCTGCTGCACCTGCATT 1320 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 GCCGGGAAATGGTCATCCCCAACATCGCGAAATTCCTGAGCAGCAATGGAGAATGGCATG 1380 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 AAAATGGTGCTCCATGGTCCAAGGAGAAGCCCAATCTCCTCAGGTTCATCGCACCGATGC 1440 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 CTGCACATATGAAAATTAGCTGGAATATCATGTCCTCATATCTGGTGTAAGAGCATCTCC 1500 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 ATGTGCCATTGTTGGTAACATCAAGTTTCATTCCATGTAGTTTTACTGAGAAGCAGCTAG 1560 consensus_3969#1 ------------------------------------------------------------ consensus_3969#0 GCTTCTAGTTCATTATTTTCTAGATTCTATAGCTACATCTTCTCACAGTCTGGGTGAGAA 1620 consensus_3969#1 ---------------------------------------------------GGGTGAGAA 9 ********* consensus_3969#0 TCTGTTCTGCACTGCTTCGGGAGCCTAAGATTTTAGGATATAAGCTGCCGCTGCTAGAAG 1680 consensus_3969#1 TCTGTTCTGCACTGCTTCGGGAGCCTAAGATTTTAGGATATAAGCTGCCGCTGCTAGAAG 69 ************************************************************ consensus_3969#0 CTCAGCTCCCCCGAATAGTGCCATAGCTGTTTTTTTCAGGAATGCCAGATTGTAGCATCT 1740 consensus_3969#1 CTCAGCTCCCCCGAATAGTGCCATAGCTGTTTTTTTCAGGAATGCCAGATTGTAGCATCT 129 ************************************************************ consensus_3969#0 GAACCATTGCAAAAGAAACAGTTGGTGTGAATATAGATCAATTTTCTAAGAGTATACATC 1800 consensus_3969#1 GAACCATTGCAAAAGAAACAGTTGGTGTGAATATAGATCAATTTTCTAAAAAAAAAAAAA 189 ************************************************* * * * * consensus_3969#0 CTACCAAAGTTTTAAATCTTTGTTTCTTTTTTGTAAGCATGATGTAATTCTGAACAATAA 1860 consensus_3969#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 219 * *** *** consensus_3969#0 TTACTGTACGTTGCAGCATTTTACTACTAATGAAATGCCACTGCTA 1906 consensus_3969#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||