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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1053 fasta sequence
[ATCCCTGCAACCCCAAAGTTCTCCTGTCGCCGGGGTCGGCGGCGAGGCGGCGACGCCATGGCCGCACGGCCCACAGGTCGCCGCCGCCGCGGCCTCGCCGTCGTCGTATCAAGTAACATCGCGCTCTTTGCGGGCGGCGACGAAGCCGACGATGGTCCCGGATTCTCCGGGGGGAGATCGAATGCTTCTCTCCGCCGCCGAGCGCCGCGGCAGGGCGGCTCTGAACGAGGGGGAGCTCGGAGCCCTTTTGATTGGGAGTGCGGAAACCCTCGGTGGCGGCTCGTAACTCGTAGCCCCTGGCTCCGACCACGTCTCCGCCTGATGGAGGTGGCATCCAGAGAGAGAACATCGAGCACGTACCTGCTGATGCAGCCTGGAAGTTGTTACCCCTGGAATCCCTGACATGGAGAACCAACCTTGTTCTGTAGTTTTTATGCGATGCATAGAAGTCCTCCACAGCCATTGAGATGCTGGTCCTTGCTTCCTTGCCAACTAACGATCCCAGGTCCAGGATCACCCCGACGTGGAATTCATCTGCTCCAGGGTCGTTCGTCGCATTCAGAGCTACGGCACATGAATGGGCGAAGAGCATCAGCAAGAGGATGGCTCCAGGAGGTGCTTTCTCCATTACAGGACTACCTGCTGAAAACTTGAGAAGACTTTACCGTCTCTGCAAGACTACAATGGTCAAGAACTCAAGATCACTATCATGTATATCATAGTATGATACTTGGAAGTATTTGAACCGTCTAATTTGATGCGTTTCATGACGCGTTTATCGCAGATGGATCCAAAACCATATATGGAATGATTCGTAGGTGGTTTGTAGAATGAACAGTCCATGGAATAGATTCCAGAAACTGTTAATGACTAATTGGCGCCGTTAGGAGCAAATCCTGATTGTTCAGCATCTGGGAATTTCTCTTTAATTGCCTCGAGCAAGCGATGGCAAGTCAACTCTACTGATTATACTGAATTGGTCAGTACAATTACTGTATTCTAACGACTTGTATTAATCCTTGACTCGTCCGTGAAAATCGACTGCTCATACTC]
[+] EMBL AK120077 [ATCCCTGCAACCCCAAAGTTCTCCTGTCGCCGGGGTCGGCGGCGAGGCGGCGACGCCATGGCCGCACGGCCCACAGGTCGCCGCCGCCGCGGCCTCGCCGTCGTCGTATCAAGTAACATCGCGCTCTTTGCGGGCGGCGACGAAGCCGACGATGGTCCCGGATTCTCCGGGGGGAGATCGAATGCTTCTCTCCGCCGCCGAGCGCCGCGGCAGGGCGGCTCTGAACGAGGGGGAGCTCGGAGCCCTTTTGATTGGGAGTGCGGAAACCCTCGGTGGCGGCTCGTAACTCGTAGCCCCTGGCTCCGACCACGTCTCCGCCTGATGGAGGTGGCATCCAGAGAGAGAACATCGAGCACGTACCTGCTGATGCAGCCTGGAAGTTGTTACCCCTGGAATCCCTGACATGGAGAACCAACCTTGTTCTGTAGTTTTTATGCGATGCATAGAAGTCCTCCACAGCCATTGAGATGCTGGTCCTTGCTTCCTTGCCAACTAACGATCCCAGGTCCAGGATCACCCCGACGTGGAATTCATCTGCTCCAGGGTCGTTCGTCGCATTCAGAGCTACGGCACATGAATGGGCGAAGAGCATCAGCAAGAGGATGGCTCCAGGAGGTGCTTTCTCCATTACAGGACTACCTGCTGAAAACTTGAGAAGACTTTACCGTCTCTGCAAGACTACAATGGTCAAGAACTCAAGATCACTATCATGTATATCATAGTATGATACTTGGAAGTATTTGAACCGTCTAATTTGATGCGTTTCATGACGCGTTTATCGCAGATGGATCCAAAACCATATATGGAATGATTCGTAGGTGGTTTGTAGAATGAACAGTCCATGGAATAGATTCCAGAAACTGTTAATGACTAATTGGCGCCGTTAGGAGCAAATCCTGATTGTTCAGCATCTGGGAATTTCTCTTTAATTGCCTCGAGCAAGCGATGGCAAGTCAACTCTACTGATTATACTGAATTGGTCAGTACAATTACTGTATTCTAACGACTTGTATTAATCCTTGA ]
[+] EMBL AK060993 [ CCTGTCGCCGGGGTCGGCGGCGAGGCGGCGACGCCATGGCCGCACGGCCCACAGGTCGCCGCCGCCGCGGCCTCGCCGTCGTCGTATCAAGTAACATCGCGCTCTTTGCGGGCGGCGACGAAGCCGACGATGGTCCCGGATTCTCCGGGGGGAGATCGAATGCTTCTCTCCGCCGCCGAGCGCCGCGGCAGGGCGGCTCTGAACGAGGGGGAGCTCGGAGCCCTTTTGATTGGGAGTGCGGAAACCCTCGGTGGCGGCTCGTAACTCGTAGCCCCTGGCTCCGACCACGTCTCCGCCTGATGGAGGTGGCATCCAGAGAGAGAACATCGAGCACGTACCTGCTGATGCAGCCTGGAAGTTGTTACCCCTGGAATCCCTGACATGGAGAACCAACCTTGTTCTGTAGTTTTTATGCGATGCATAGAAGTCCTCCACAGCCATTGAGATGCTGGTCCTTGCTTCCTTGCCAACTAACGATCCCAGGTCCAGGATCACCCCGACGTGGAATTCATCTGCTCCAGGGTCGTTCGTCGCATTCAGAGCTACGGCACATGAATGGGCGAAGAGCATCAGCAAGAGGATGGCTCCAGGAGGTGCTTTCTCCATTACAGGACTACCTGCTGAAAACTTGAGAAGACTTTACCGTCTCTGCAAGACTACAATGGTCAAGAACTCAAGATCACTATCATGTATATCATAGTATGATACTTGGAAGTATTTGAACCGTCTAATTTGATGCGTTTCATGACGCGTTTATCGCAGATGGATCCAAAACCATATATGGAATGATTCGTAGGTGGTTTGTAGAATGAACAGTCCATGGAATAGATTCCAGAAACTGTTAATGACTAATTGGCGCCGTTAGGAGCAAATCCTGATTGTTCAGCATCTGGGAATTTCTCTTTAATTGCCTCGAGCAAGCGATGGCAAGTCAACTCTACTGATTATACTGAATTGGTCAGTACAATTACTGTATTCTAACGACTTGTATTAATCCTTGACTCGTCCGTGAAAATCGACTGCTCATACTC]
consensusID : consensus_3973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence
[TAAACCGGTGAGGAAGAGCGAGCAATTCACTTATTCTTCGAACACAAGGTTTTACCCAGAACATCGAGCACGTACCTGCTGATGCAGCCTGGAAGTTGTTACCCCTGGAATCCCTGACATGGAGAACCAACCTTGTTCTGTAGTTTTTATGCGATGCATAGAAGTCCTCCACAGCCATTGAGATGCTGGTCCTTGCTTCCTTGCCAACTAACGATCCCAGGTCCAGGATCACCCCGACGTGGAATTCATCTGCTCCAGGGTCGTTCGTCGCATTCAGAGCTACGGCACATGAATGGGCGAAGAGCATCAGCAAGAGGATGGCTCCAGGAGGTGCTTTCTCCATTACAGGACTACCTGCTGAAAACTTGAGAAGACTTTACCGTCTCTGCAAGACTACNATGGTCAAGAACTCAAGATCACTATCATGTATATCATAGTATGATACTTGGAAGTATTTGAACCGTCTAATTTGATGCGTTTCATGACGCGTTTATCGCAGATGGATCCAAAACCATATATGGAATGATTCGTAGGTGGTTTGTAGAATGAACAGTCCATGGAATAGATTCCAGAAACTGTTAATGACTAATTGGCGCC]
[+] EMBL CA755601 [TAAACCGGTGAGGAAGAGCGAGCAATTCACTTATTCTTCGAACACAAGGTTTTACCCAGAACATCGAGCACGTACCTGCTGATGCAGCCTGGAAGTTGTTACCCCTGGAATCCCTGACATGGAGAACCAACCTTGTTCTGTAGTTTTTATGCGATGCATAGAAGTCCTCCACAGCCATTGAGATGCTGGTCCTTGCTTCCTTGCCAACTAACGATCCCAGGTCCAGGATCACCCCGACGTGGAATTCATCTGCTCCAGGGTCGTTCGTCGCATTCAGAGCTACGGCACATGAATGGGCGAAGAGCATCAGCAAGAGGATGGCTCCAGGAGGTGCTTTCTCCATTACAGGACTACCTGCTGAAAACTTGAGAAGACTTTACCGTCTCTGCAAGACTACNATGGTCAAGAACTCAAGATCACTATCATGTATATCATAGTATGATACTTGGAAGTATTTGAACCGTCTAATTTGATGCGTTTCATGACGCGTTTATCGCAGATGGATCCAAAACCATATATGGAATGATTCGTAGGTGGTTTGTAGAATGAACAGTCCATGGAATAGATTCCAGAAACTGTTAATGACTAATTGGCGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3973#0 ATCCCTGCAACCCCAAAGTTCTCCTGTCGCCGGGGTCGGCGGCGAGGCGGCGACGCCATG 60
consensus_3973#1 ------------------------------------------------------------
consensus_3973#0 GCCGCACGGCCCACAGGTCGCCGCCGCCGCGGCCTCGCCGTCGTCGTATCAAGTAACATC 120
consensus_3973#1 ------------------------------------------------------------
consensus_3973#0 GCGCTCTTTGCGGGCGGCGACGAAGCCGACGATGGTCCCGGATTCTCCGGGGGGAGATCG 180
consensus_3973#1 ------------------------------------------------------------
consensus_3973#0 AATGCTTCTCTCCGCCGCCGAGCGCCGCGGCAGGGCGGCTCTGAACGAGGGGGAGCTCGG 240
consensus_3973#1 ------------------------------------------------------------
consensus_3973#0 AGCCCTTTTGATTGGGAGTGCGGAAACCCTCGGTGGCGGCTCGTAACTCGTAGCCCCTGG 300
consensus_3973#1 -----------------------------------TAAACCGGTGAGGAAGAGCGAGCAA 25
* ** * ***
consensus_3973#0 CTCCGACCACGTCTCCGCCTGATGGAGGTGGCATCCAGAGAGAGAACATCGAGCACGTAC 360
consensus_3973#1 TTC--ACTTATTCTTCGAACA--CAAGGTTTTACCCAG------AACATCGAGCACGTAC 75
** ** *** ** **** * **** ****************
consensus_3973#0 CTGCTGATGCAGCCTGGAAGTTGTTACCCCTGGAATCCCTGACATGGAGAACCAACCTTG 420
consensus_3973#1 CTGCTGATGCAGCCTGGAAGTTGTTACCCCTGGAATCCCTGACATGGAGAACCAACCTTG 135
************************************************************
consensus_3973#0 TTCTGTAGTTTTTATGCGATGCATAGAAGTCCTCCACAGCCATTGAGATGCTGGTCCTTG 480
consensus_3973#1 TTCTGTAGTTTTTATGCGATGCATAGAAGTCCTCCACAGCCATTGAGATGCTGGTCCTTG 195
************************************************************
consensus_3973#0 CTTCCTTGCCAACTAACGATCCCAGGTCCAGGATCACCCCGACGTGGAATTCATCTGCTC 540
consensus_3973#1 CTTCCTTGCCAACTAACGATCCCAGGTCCAGGATCACCCCGACGTGGAATTCATCTGCTC 255
************************************************************
consensus_3973#0 CAGGGTCGTTCGTCGCATTCAGAGCTACGGCACATGAATGGGCGAAGAGCATCAGCAAGA 600
consensus_3973#1 CAGGGTCGTTCGTCGCATTCAGAGCTACGGCACATGAATGGGCGAAGAGCATCAGCAAGA 315
************************************************************
consensus_3973#0 GGATGGCTCCAGGAGGTGCTTTCTCCATTACAGGACTACCTGCTGAAAACTTGAGAAGAC 660
consensus_3973#1 GGATGGCTCCAGGAGGTGCTTTCTCCATTACAGGACTACCTGCTGAAAACTTGAGAAGAC 375
************************************************************
consensus_3973#0 TTTACCGTCTCTGCAAGACTACAATGGTCAAGAACTCAAGATCACTATCATGTATATCAT 720
consensus_3973#1 TTTACCGTCTCTGCAAGACTACNATGGTCAAGAACTCAAGATCACTATCATGTATATCAT 435
********************** *************************************
consensus_3973#0 AGTATGATACTTGGAAGTATTTGAACCGTCTAATTTGATGCGTTTCATGACGCGTTTATC 780
consensus_3973#1 AGTATGATACTTGGAAGTATTTGAACCGTCTAATTTGATGCGTTTCATGACGCGTTTATC 495
************************************************************
consensus_3973#0 GCAGATGGATCCAAAACCATATATGGAATGATTCGTAGGTGGTTTGTAGAATGAACAGTC 840
consensus_3973#1 GCAGATGGATCCAAAACCATATATGGAATGATTCGTAGGTGGTTTGTAGAATGAACAGTC 555
************************************************************
consensus_3973#0 CATGGAATAGATTCCAGAAACTGTTAATGACTAATTGGCGCCGTTAGGAGCAAATCCTGA 900
consensus_3973#1 CATGGAATAGATTCCAGAAACTGTTAATGACTAATTGGCGCC------------------ 597
******************************************
consensus_3973#0 TTGTTCAGCATCTGGGAATTTCTCTTTAATTGCCTCGAGCAAGCGATGGCAAGTCAACTC 960
consensus_3973#1 ------------------------------------------------------------
consensus_3973#0 TACTGATTATACTGAATTGGTCAGTACAATTACTGTATTCTAACGACTTGTATTAATCCT 1020
consensus_3973#1 ------------------------------------------------------------
consensus_3973#0 TGACTCGTCCGTGAAAATCGACTGCTCATACTC 1053
consensus_3973#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||