These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3974#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1424 fasta sequence [ACCACTAAAAATTAAAGTGAGCTAAGCCAACACTTTGGCGGCAGAAACTTGCAGCTAAGCATTGTCCCTCCTCATCTGCAAAGGCAGAGGAGATACATTCCCTCGTCCTCTTTCGCTTGATATCAAGTTATCAACAGTGCTCTCCTATCCGTGAGCCGTGCACAACTGCACACGATGGTGTTGATTCGTCTTACTATGCTGATCTTTATCGCCATCCTCCTTGCCGGCCGCACATGCGTACTTGTTGTTGCCGGCGGTGGAATGCCGGCAACCTTCGTGTTCGGTGACTCGCTCGTCGACGCCGGCAACAACAACTATCTCGTCTCCCTGTCCAAGGCAAACTACCCACCAAACGGCATCGACTTCGACGGACACCAGCCCACCGGCCGGTACACCAACGGCCGCACCATCGTGGATATACTAGGGCAGGAAATGTCGGGAGGATTTGTGCCGCCCTACCTGGCGCCGGAGACCGCCGGCGACGTCCTGCTTAAGGGCGTCAACTACGCGTCCGGCGGCGGAGGCATTCTGAACCAAACCGGGAGCATCTTCGGTGGGCGCATCAATCTGGACGCCCAGATCGACAACTACGCCAACAACCGGCACGAGCTGATCAAGCGGCACGGGGAGTTGGAGGCGGTGACCCTGCTCCGTGGCGCGCTCTTCTCGGTCACGATGGGATCCAACGATTTCATCAACAACTACCTCACCCCAATCTTCGGCGTGCCGGAGCGCGCCGTGACGCCACCGGAGGTCTTCGTCGACGCCCTCATATCCAAATACCGGGAGCAGCTCATAAGGCTGTACCTGCTGGACGCCCGTAAGATCGTGGTGGCGAACGTTGGGCCGATCGGGTGCATCCCGTACCTGAGGGACACGACGCCGACGGTCGGAACGGCGTGCGCCAAGTTCCCTAACCAGCTTGCCCGCAACTTCAACCGCAAGCTGCGCGGCCTGGTGGACGAGCTGAGCGCCAACCTCACCGGCTCCCGCTTCCTCTACGCCGACGTCTACCGCGTCTTCTCCGACATCATCGCCAACTACAAGTCGCACGGGTTCGAGGTGGCGGACTCGGCGTGCTGCTACGTGAGCGGGAGGTTCGGCGGGTTGCTGCCGTGCGGGCCGACGTCGCAGTACTGCGCGGACAGGTCCAAGTACGTGTTCTGGGACCCGTACCACCCAAGCGACGCCGCGAACGCGCTCATCGCCCGCCGGATCACCGACGGCGAGCCGGCGGACATCTTCCCGATCAACGTGCGCCAGCTGATCACGAGCTGATACCGATAATTCGGTTGTAGTACTAGCCTTCACGGGCTAGGAGTAGTAGAAGGAACTTGCAGGATAGCTATTGATTTCTGTCCGTTTGGACGCATATTTTGGGGAGACGCACTGATGGATATGTGCATGTGATGCCATTGATGGAC] [+] EMBL AK060625 [ACCACTAAAAATTAAAGTGAGCTAAGCCAACACTTTGGCGGCAGAAACTTGCAGCTAAGCATTGTCCCTCCTCATCTGCAAAGGCAGAGGAGATACATTCCCTCGTCCTCTTTCGCTTGATATCAAGTTATCAACAGTGCTCTCCTATCCGTGAGCCGTGCACAACTGCACACGATGGTGTTGATTCGTCTTACTATGCTGATCTTTATCGCCATCCTCCTTGCCGGCCGCACATGCGTACTTGTTGTTGCCGGCGGTGGAATGCCGGCAACCTTCGTGTTCGGTGACTCGCTCGTCGACGCCGGCAACAACAACTATCTCGTCTCCCTGTCCAAGGCAAACTACCCACCAAACGGCATCGACTTCGACGGACACCAGCCCACCGGCCGGTACACCAACGGCCGCACCATCGTGGATATACTAGGGCAGGAAATGTCGGGAGGATTTGTGCCGCCCTACCTGGCGCCGGAGACCGCCGGCGACGTCCTGCTTAAGGGCGTCAACTACGCGTCCGGCGGCGGAGGCATTCTGAACCAAACCGGGAGCATCTTCGGTGGGCGCATCAATCTGGACGCCCAGATCGACAACTACGCCAACAACCGGCACGAGCTGATCAAGCGGCACGGGGAGTTGGAGGCGGTGACCCTGCTCCGTGGCGCGCTCTTCTCGGTCACGATGGGATCCAACGATTTCATCAACAACTACCTCACCCCAATCTTCGGCGTGCCGGAGCGCGCCGTGACGCCACCGGAGGTCTTCGTCGACGCCCTCATATCCAAATACCGGGAGCAGCTCATAAGGCTGTACCTGCTGGACGCCCGTAAGATCGTGGTGGCGAACGTTGGGCCGATCGGGTGCATCCCGTACCTGAGGGACACGACGCCGACGGTCGGAACGGCGTGCGCCAAGTTCCCTAACCAGCTTGCCCGCAACTTCAACCGCAAGCTGCGCGGCCTGGTGGACGAGCTGAGCGCCAACCTCACCGGCTCCCGCTTCCTCTACGCCGACGTCTACCGCGTCTTCTCCGACATCATCGCCAACTACAAGTCGCACGGGTTCGAGGTGGCGGACTCGGCGTGCTGCTACGTGAGCGGGAGGTTCGGCGGGTTGCTGCCGTGCGGGCCGACGTCGCAGTACTGCGCGGACAGGTCCAAGTACGTGTTCTGGGACCCGTACCACCCAAGCGACGCCGCGAACGCGCTCATCGCCCGCCGGATCACCGACGGCGAGCCGGCGGACATCTTCCCGATCAACGTGCGCCAGCTGATCACGAGCTGATACCGATAATTCGGTTGTAGTACTAGCCTTCACGGGCTAGGAGTAGTAGAAGGAACTTGCAGGATAGCTATTGATTTCTGTCCGTTTGGACGCATATTTTGGGGAGACGCACTGATGGATATGTGCATGTGATGCCATTGATGGAC] [-] EMBL CB671170 [ CAACTACCTCACCCCAATCTTCGGCGTGCCGGAGCGCGCCGTGACGCCACCGGAGGTCTTCGTCGACGCCCTCATATCCAAATACCGGGAGCAGCTCATAAGGCTGTACCTGCTGGACGCCCGTAAGATCGTGGTGGCGAACGTTGGGCCGATCGGGTGCATCCCGTACCTGAGGGACACGACGCCGACGGTCGGAACGGCGTGCGCCGAGTTCCCTAACCAGCTTGCCCGCAACTTCAACCGCAAGCTGCGCGGCCTGGTGGACGAGCTGAGCGCCAACCTCACCGGCTCCCGCTTCCTCTACGCCGACGTCTACCGCGTCTTCTCCGACATCATCGCCAACTACAAGTCGCACGGGTTCGAGGTGGCGGACTCGGCGTGCTGCTACGTGAGCGGGAGGTTCGGCGGGTTGCTGCCGTGCGGGCCGACGTCGCAGTACTGCGCGGACAGGTCCAAGTACGTGTTCTGGGACCCGTACCACCCAAGCGACGCCGCGAACGCGCTCATCGCCCGCCGGATCATCGACGGCGAGCCGGCGGACATCTTCCCGATCAACGTGCGCCAGCGGATCACGAGCTGATACCGATAATTCGGTTGTAGTACTAGCCTTCACGGGCTAGGAGTAGTAGAAGGATCTAGGGGGATAGCTATTGATTTCTG ] consensusID : consensus_3974#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 767 fasta sequence [AAATTAAAGTGAGCTAAGCCAACACTTTGGCGGCAGAAACTTGCAGCTAAGCATTGTCCCTCCTCATCTGCAAAGGCAGAGGAGATACATTCTCTCGTCCTCTTTCGCTTGATATCAAGTTATCAACAGTGCTCTCCTATCCGTGAGCCGTGCACAACTGCACACGATGGTGTTGATTCGTCTTACTATGCTGATCTTTATCGCCATCCTCCTTGCCGGCCGCACATGCGTACTTGTTGTTGCCGGCGGTGGAATGCCGGCAACCTTCGTGTTCGGTGACTCGCTCGTCGACGCCGGCAACAACAACTATCTCGTCTCCCTGTCCAAGGCAAACTACCCACCAAACGGCATCGACTTCGACGGACACCAGCCCACCGGCCGGTACACCAACGGCCGCACCATCGTGGATATACTAGGATTAGGTGGAGATTTCTCAGATGATACAACGATCTGACCTGCACGGACGCATTAGATCACCTAGGAACAGGAGATATAGGCAAAAGCTAATTCTCACAGCAATGTTTACGATCTTCATTGCCGGAACATGCATGGCTAATTGGGCTCATAAACTTTGGTTTAATTTTCAGGGCAGGAAATGTCGGGAGGATTTGTGCCGCCCTACCTGGCGCCGGAGACCGCCGGCGACGTCCTGCTTAAGGGCGTCAACTACGCGTCCGGCGGCGGAGGCATTCTGAACCAAACCGGGAGCATCTTCGGTGGGCGCATCAATCTGGACGCCCAGATCGACAACTACGCCCACAACCGGC] [+] EMBL CB671169 [AAATTAAAGTGAGCTAAGCCAACACTTTGGCGGCAGAAACTTGCAGCTAAGCATTGTCCCTCCTCATCTGCAAAGGCAGAGGAGATACATTCTCTCGTCCTCTTTCGCTTGATATCAAGTTATCAACAGTGCTCTCCTATCCGTGAGCCGTGCACAACTGCACACGATGGTGTTGATTCGTCTTACTATGCTGATCTTTATCGCCATCCTCCTTGCCGGCCGCACATGCGTACTTGTTGTTGCCGGCGGTGGAATGCCGGCAACCTTCGTGTTCGGTGACTCGCTCGTCGACGCCGGCAACAACAACTATCTCGTCTCCCTGTCCAAGGCAAACTACCCACCAAACGGCATCGACTTCGACGGACACCAGCCCACCGGCCGGTACACCAACGGCCGCACCATCGTGGATATACTAGGATTAGGTGGAGATTTCTCAGATGATACAACGATCTGACCTGCACGGACGCATTAGATCACCTAGGAACAGGAGATATAGGCAAAAGCTAATTCTCACAGCAATGTTTACGATCTTCATTGCCGGAACATGCATGGCTAATTGGGCTCATAAACTTTGGTTTAATTTTCAGGGCAGGAAATGTCGGGAGGATTTGTGCCGCCCTACCTGGCGCCGGAGACCGCCGGCGACGTCCTGCTTAAGGGCGTCAACTACGCGTCCGGCGGCGGAGGCATTCTGAACCAAACCGGGAGCATCTTCGGTGGGCGCATCAATCTGGACGCCCAGATCGACAACTACGCCCACAACCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3974#0 ACCACTAAAAATTAAAGTGAGCTAAGCCAACACTTTGGCGGCAGAAACTTGCAGCTAAGC 60 consensus_3974#1 --------AAATTAAAGTGAGCTAAGCCAACACTTTGGCGGCAGAAACTTGCAGCTAAGC 52 **************************************************** consensus_3974#0 ATTGTCCCTCCTCATCTGCAAAGGCAGAGGAGATACATTCCCTCGTCCTCTTTCGCTTGA 120 consensus_3974#1 ATTGTCCCTCCTCATCTGCAAAGGCAGAGGAGATACATTCTCTCGTCCTCTTTCGCTTGA 112 **************************************** ******************* consensus_3974#0 TATCAAGTTATCAACAGTGCTCTCCTATCCGTGAGCCGTGCACAACTGCACACGATGGTG 180 consensus_3974#1 TATCAAGTTATCAACAGTGCTCTCCTATCCGTGAGCCGTGCACAACTGCACACGATGGTG 172 ************************************************************ consensus_3974#0 TTGATTCGTCTTACTATGCTGATCTTTATCGCCATCCTCCTTGCCGGCCGCACATGCGTA 240 consensus_3974#1 TTGATTCGTCTTACTATGCTGATCTTTATCGCCATCCTCCTTGCCGGCCGCACATGCGTA 232 ************************************************************ consensus_3974#0 CTTGTTGTTGCCGGCGGTGGAATGCCGGCAACCTTCGTGTTCGGTGACTCGCTCGTCGAC 300 consensus_3974#1 CTTGTTGTTGCCGGCGGTGGAATGCCGGCAACCTTCGTGTTCGGTGACTCGCTCGTCGAC 292 ************************************************************ consensus_3974#0 GCCGGCAACAACAACTATCTCGTCTCCCTGTCCAAGGCAAACTACCCACCAAACGGCATC 360 consensus_3974#1 GCCGGCAACAACAACTATCTCGTCTCCCTGTCCAAGGCAAACTACCCACCAAACGGCATC 352 ************************************************************ consensus_3974#0 GACTTCGACGGACACCAGCCCACCGGCCGGTACACCAACGGCCGCACCATCGTGGATATA 420 consensus_3974#1 GACTTCGACGGACACCAGCCCACCGGCCGGTACACCAACGGCCGCACCATCGTGGATATA 412 ************************************************************ consensus_3974#0 CTAGGGCAGGAAATGTCGGGAGGATTTGTGCCGCCCTACCTGGCGCCGGAGACCGCCGGC 480 consensus_3974#1 CTAGGATTAG-------GTGGAGATTT-------CTCAGATGATACAACGATCTGACCTG 458 ***** * * * ***** * * ** * * * * consensus_3974#0 GACGTCCTGCTTAAGGGCGTCAACTACGCGTCCGGCGGCGGAGGCATT--CTGAACCAAA 538 consensus_3974#1 CACGGACGCATTAGA----TCACCTAGG-AACAGGAGATATAGGCAAAAGCTAATTCTCA 513 *** * *** *** *** * * ** * ***** ** * * * consensus_3974#0 CCGGGAGCATCTTCGGTGGGCGCATCAATCTGGACGCCCAGATCGACAACTACGCCAACA 598 consensus_3974#1 C-AGCAATGTTTACGAT-----CTTCATTGCCGGAACATGCATGGCTAATTGGGCTCATA 567 * * * * * ** * * *** * * * ** * ** * ** * * consensus_3974#0 ACCGGCACGAGCTGATCAAGCGGCACGGGGAGTTGGAGGCGGTGACCCTGCTCCGTGGCG 658 consensus_3974#1 A---ACTTTGGTTTAATTTTCAGGGCAGGAAATGTCGGGAGGA--------TTTGTGCCG 616 * * * * * * * * ** * * ** ** * *** ** consensus_3974#0 CGCTCTTCTCGGTCACGATGGGATCCAACGATTTCATCAACAACTACCTCACCCCAATCT 718 consensus_3974#1 C--CCTACCTGGCGCCGGAGACCGCCGGCGACGTCCTGCTTAAGGGCGTCAACTACGCGT 674 * ** * ** ** * ** *** ** * ** * *** * * consensus_3974#0 TCGGCGTGCCGGAGCGCGCCGTGACGCCACCGGAG-GTCTTCGTCGACGCCCTCATATCC 777 consensus_3974#1 CCGGCG-GCGGAGGCATTCTGAACCAAACCGGGAGCATCTTCGGTGGGCGCATCA-ATCT 732 ***** ** * ** * * * * **** ****** * * *** *** consensus_3974#0 AAATACCGGGAGCAGCTCATAAGGCTGTACCTGCTGGACGCCCGTAAGATCGTGGTGGCG 837 consensus_3974#1 GGACGCCCAGATCGACAACTACGCCCACAACCGGC------------------------- 767 * ** ** * * ** * * * * * consensus_3974#0 AACGTTGGGCCGATCGGGTGCATCCCGTACCTGAGGGACACGACGCCGACGGTCGGAACG 897 consensus_3974#1 ------------------------------------------------------------ consensus_3974#0 GCGTGCGCCAAGTTCCCTAACCAGCTTGCCCGCAACTTCAACCGCAAGCTGCGCGGCCTG 957 consensus_3974#1 ------------------------------------------------------------ consensus_3974#0 GTGGACGAGCTGAGCGCCAACCTCACCGGCTCCCGCTTCCTCTACGCCGACGTCTACCGC 1017 consensus_3974#1 ------------------------------------------------------------ consensus_3974#0 GTCTTCTCCGACATCATCGCCAACTACAAGTCGCACGGGTTCGAGGTGGCGGACTCGGCG 1077 consensus_3974#1 ------------------------------------------------------------ consensus_3974#0 TGCTGCTACGTGAGCGGGAGGTTCGGCGGGTTGCTGCCGTGCGGGCCGACGTCGCAGTAC 1137 consensus_3974#1 ------------------------------------------------------------ consensus_3974#0 TGCGCGGACAGGTCCAAGTACGTGTTCTGGGACCCGTACCACCCAAGCGACGCCGCGAAC 1197 consensus_3974#1 ------------------------------------------------------------ consensus_3974#0 GCGCTCATCGCCCGCCGGATCACCGACGGCGAGCCGGCGGACATCTTCCCGATCAACGTG 1257 consensus_3974#1 ------------------------------------------------------------ consensus_3974#0 CGCCAGCTGATCACGAGCTGATACCGATAATTCGGTTGTAGTACTAGCCTTCACGGGCTA 1317 consensus_3974#1 ------------------------------------------------------------ consensus_3974#0 GGAGTAGTAGAAGGAACTTGCAGGATAGCTATTGATTTCTGTCCGTTTGGACGCATATTT 1377 consensus_3974#1 ------------------------------------------------------------ consensus_3974#0 TGGGGAGACGCACTGATGGATATGTGCATGTGATGCCATTGATGGAC 1424 consensus_3974#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||