These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3978#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1000 fasta sequence [GTCCTTAGCTTAGCTAGGACTAGGAGTAGTAGCTACCTAGCTGAAGCTTAGCTGCCTAGTGGGGAGTAGCTTAGCTTAGCTAGCTAGCTAGCTATAGGCGAGATGCTGGGCTGCTTCTCCCGGCTGCGGCGGCCGGCGTCGGCGGGGGCGGCGCCGGCGCCCATGGCGCAGTCTGACGACGCGTCGACGTCGACCTCGGCTGGCGGCGGCGGCGGCTGCACCGCGGAGACCTCGCCGTGCTCCTCGTCCTCCTCGCTCCGGTGCAAGAACTCGGGCGGCGTCGGCGGTGAAGACGACGACGATGGTGTCGGCGGCGGCGGCGCCGTCGTCGCTGAGAACGCCTCGGCGCTGTCCGACTCCGGGCTGTCGTCGGCCATCGCGTCGCGCCGGTTCTTCCTCTCCTCGCCCGGCAGGTCCAACTCCATCGTCGACTCGTCGGCGCACGGCGCCGCCGTCGGCGTGGGCGCGGCCGGGGTGGCGGTGCCGACGTACTCGCCGGACCCGCACGCCGACTTCCTCAGGTCGATGGAGGAGATGGTGGCGGCGCTGCGGCTGGACGCGCGCCGCCGCGGCGACAGGGCGCGGCTCCACGAGCTGCTCCTCTGCTACCTCGCGCTCAACGACCGGCGCGCCCACAAGTACGTCGTCAGCGCCTTCACCGACCTCCTCCTCCGCATCACCGCCGCCGCCAACCTCGACGACGGCGAGCCGCCGCGCCATGGCCGCCACCTGCACGAGTCACATTGAACCCTTTTGCTTTCTTGATTTCTTAATTCTCTTCCATTTTTTTGATTTTTTTTTGGGTCTCACTTTTCTATTTGAATTGCTGCGTACGAACAGATTTTTGGTACGAGATTCTTCGAACGATCGACTGAAAATCTCGTTGCATGCAAAATCGCAAGCAAAATGTTTTGTACTCTAAAATGTCGGGGTCGTCTAGCTAGCTGTAAATATGTCTGGAAATTTCGTACCAAAGTTCAGTTCGTATGCAAAAGCTTTT] [+] EMBL AK108557 [GTCCTTAGCTTAGCTAGGACTAGGAGTAGTAGCTACCTAGCTGAAGCTTAGCTGCCTAGTGGGGAGTAGCTTAGCTTAGCTAGCTAGCTAGCTATAGGCGAGATGCTGGGCTGCTTCTCCCGGCTGCGGCGGCCGGCGTCGGCGGGGGCGGCGCCGGCGCCCATGGCGCAGTCTGACGACGCGTCGACGTCGACCTCGGCTGGCGGCGGCGGCGGCTGCACCGCGGAGACCTCGCCGTGCTCCTCGTCCTCCTCGCTCCGGTGCAAGAACTCGGGCGGCGTCGGCGGTGAAGACGACGACGATGGTGTCGGCGGCGGCGGCGCCGTCGTCGCTGAGAACGCCTCGGCGCTGTCCGACTCCGGGCTGTCGTCGGCCATCGCGTCGCGCCGGTTCTTCCTCTCCTCGCCCGGCAGGTCCAACTCCATCGTCGACTCGTCGGCGCACGGCGCCGCCGTCGGCGTGGGCGCGGCCGGGGTGGCGGTGCCGACGTACTCGCCGGACCCGCACGCCGACTTCCTCAGGTCGATGGAGGAGATGGTGGCGGCGCTGCGGCTGGACGCGCGCCGCCGCGGCGACAGGGCGCGGCTCCACGAGCTGCTCCTCTGCTACCTCGCGCTCAACGACCGGCGCGCCCACAAGTACGTCGTCAGCGCCTTCACCGACCTCCTCCTCCGCATCACCGCCGCCGCCAACCTCGACGACGGCGAGCCGCCGCGCCATGGCCGCCACCTGCACGAGTCACATTGAACCCTTTTGCTTTCTTGATTTCTTAATTCTCTTCCATTTTTTTGATTTTTTTTTGGGTCTCACTTTTCTATTTGAATTGCTGCGTACGAACAGATTTTTGGTACGAGATTCTTCGAACGATCGACTGAAAATCTCGTTGCATGCAAAATCGCAAGCAAAATGTTTTGTACTCTAAAATGTCGGGGTCGTCTAGCTAGCTGTAAATATGTCTGGAAATTTCGTACCAAAGTTCAGTTCGTATGCAAAAGCTTTT] consensusID : consensus_3978#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 491 fasta sequence [AGAGGACGAGACAAGGGGATCGCAAGCAAAATGTTTTGTACTCTAAAATGTNGGGGTCGTCTAGCTAGCTGTAAATATGTCTGGAAATTTCGTACCAAAGTTCAGTTCGTATGCAAAAGCTTTTCACTTTTTCTAAGGCGTGAGCGTGTTGGTGAAGACAGTATGATATCGGCTTCCCCAAATGTGCTGCTTTGTGTTTGCCTTTTTGGCCATCTTTGTGAGTCATCTTTTCACTGTTTCGCTCATTTCATCTTTCCTGCTCTCTCTCTCTGCTGGTTATCTGAACTTCCTACTAATTATAAGGCTGAATTTGTTGTTGTGTGGTTGATGTTGTAATAAGCTGTATTAACCATTATGATTGCTACTAGTACTAAATATTTGGGATGTGTATGTACAATCTTATTGGCTTTCCATCACAATCTCTGCCACTAATTGTATATGTCTTCAGAGAATTCAGCATTCTGTTTACTTCTTACCAAAAAAAAAAAAAA] [-] EMBL CA761671 [AGAGGACGAGACAAGGGGATCGCAAGCAAAATGTTTTGTACTCTAAAATGTNGGGGTCGTCTAGCTAGCTGTAAATATGTCTGGAAATTTCGTACCAAAGTTCAGTTCGTATGCAAAAGCTTTTCACTTTTTCTAAGGCGTGAGCGTGTTGGTGAAGACAGTATGATATCGGCTTCCCCAAATGTGCTGCTTTGTGTTTGCCTTTTTGGCCATCTTTGTGAGTCATCTTTTCACTGTTTCGCTCATTTCATCTTTCCTGCTCTCTCTCTCTGCTGGTTATCTGAACTTCCTACTAATTATAAGGCTGAATTTGTTGTTGTGTGGTTGATGTTGTAATAAGCTGTATTAACCATTATGATTGCTACTAGTACTAAATATTTGGGATGTGTATGTACAATCTTATTGGCTTTCCATCACAATCTCTGCCACTAATTGTATATGTCTTCAGAGAATTCAGCATTCTGTTTACTTCTTACCAAAAAAAAAAAAAA] [-] EMBL OS38034 [ TCGTCTAGCTAGCTG AAATATGGTGGGAAATTCCGTACCAAAGTTCAGTTCGTATGCAAAAGCTTTTCACTTTTTCTAAGGCGTGAGCGTGTTGGTGAAGACAGTATGATATGGGCTTCCCCAAATGTGCTGCTTTGTGTTTGCCTTTTTGGCCATCTTTGTGAGTCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3978#0 GTCCTTAGCTTAGCTAGGACTAGGAGTAGTAGCTACCTAGCTGAAGCTTAGCTGCCTAGT 60 consensus_3978#1 ------------------------------------------------------------ consensus_3978#0 GGGGAGTAGCTTAGCTTAGCTAGCTAGCTAGCTATAGGCGAGATGCTGGGCTGCTTCTCC 120 consensus_3978#1 ------------------------------------------------------------ consensus_3978#0 CGGCTGCGGCGGCCGGCGTCGGCGGGGGCGGCGCCGGCGCCCATGGCGCAGTCTGACGAC 180 consensus_3978#1 ------------------------------------------------------------ consensus_3978#0 GCGTCGACGTCGACCTCGGCTGGCGGCGGCGGCGGCTGCACCGCGGAGACCTCGCCGTGC 240 consensus_3978#1 ------------------------------------------------------------ consensus_3978#0 TCCTCGTCCTCCTCGCTCCGGTGCAAGAACTCGGGCGGCGTCGGCGGTGAAGACGACGAC 300 consensus_3978#1 ------------------------------------------------------------ consensus_3978#0 GATGGTGTCGGCGGCGGCGGCGCCGTCGTCGCTGAGAACGCCTCGGCGCTGTCCGACTCC 360 consensus_3978#1 ------------------------------------------------------------ consensus_3978#0 GGGCTGTCGTCGGCCATCGCGTCGCGCCGGTTCTTCCTCTCCTCGCCCGGCAGGTCCAAC 420 consensus_3978#1 ------------------------------------------------------------ consensus_3978#0 TCCATCGTCGACTCGTCGGCGCACGGCGCCGCCGTCGGCGTGGGCGCGGCCGGGGTGGCG 480 consensus_3978#1 --------------------------------------AGAGGACGAGACAAGGGGATCG 22 * ** ** * * *** ** consensus_3978#0 GTGCCGACGTACTCGCCGGACCCGCACGCCGACTTCCTCAGGTCGATGGAGGAGATGG-T 539 consensus_3978#1 CAAGCAAAATGTTTTGTACTCTAAAATGTNGGGGTCGTCTAGCTAGCTGTAAATATGTCT 82 * * * * * * * * ** ** * * * *** * consensus_3978#0 GGCGGCGCTGCGGCTGGACGCGCGCCGC-CGCGGCGACAGGGCGCGGCTCCACGAGCTGC 598 consensus_3978#1 GGAAATTTCGTACCAAAGTTCAGTTCGTATGCAAAAGCTTTTCACTTTTTC-TAAGGCGT 141 ** * * * ** ** * * * * * ** * consensus_3978#0 TCCTCTGCTACCTCGCGCTCAACGACCGGCGCGCCCACAAGTACGTCGTCAGCGCCTTCA 658 consensus_3978#1 GAGCGTGTTGGTGAAGACAGTATGATATCGGCTTCCCCAAATGTGCTGCTT-TGTGTTTG 200 ** * * * ** ** ** *** * * * * ** consensus_3978#0 CCGACCTCCTCCTCCGCATCACCGCCGCCGCCAACCTCGACGACGGCGAGCCGCCGCGCC 718 consensus_3978#1 CCTTTTTGGCCATCTTTGTGA--GTCATCTTT--TCACTGTTTCGCTCATTTCATCTTTC 256 ** * * ** * * * * * * * ** * * consensus_3978#0 ATGGCCGCCACCTGCACGAGTCACATTGAACCCTTTTGCTTTCTTGATTTCTTAATTCTC 778 consensus_3978#1 CTGCTCTCTCTCTCTGCTGGTTAT-CTGAACT-TCCTACTAATTATAAGGCTGAATTTGT 314 ** * * ** * ** * ***** * * ** * * ** **** consensus_3978#0 TTCCATTTTTTTGATTTTTTTTTGGGTCTCACTTTTCTATTTGAATTGCTGCGTACGAAC 838 consensus_3978#1 TGTTGTGTGGTTGATGTTGTAATAAGCTGTA-TTAACCATTATGATTGCTAC-TAGTACT 372 * * * ***** ** * * * * ** * *** ****** * ** * consensus_3978#0 AGATTTTTGGTACGAGATTCTTCGAACGATCGACTGAAAATCTCGTTGCATGCAAAATCG 898 consensus_3978#1 AAATATTTGGGATGTG----TATGTACAATCTTATTGGCTTTCCATCACAATCTCTGCCA 428 * ** ***** * * * * * ** *** * * * * ** * * consensus_3978#0 CAAGCAAAATGTTTTGTACTCTAAAATGTCGGGGTCGT-CTAGCTAGCTGTAAATATGTC 957 consensus_3978#1 CTAATTGTATAT---GTCTTCAGAGAATTCAGCATTCTGTTTACTTCTTACCAAAAAAAA 485 * * ** * ** ** * * ** * * * * ** * ** * consensus_3978#0 TGGAAATTTCGTACCAAAGTTCAGTTCGTATGCAAAAGCTTTT 1000 consensus_3978#1 AAAAAA------------------------------------- 491 *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||