These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3987#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 782 fasta sequence [CGTCGTCTACCTCGCGCCGCTCACCTCTCGCCGTCGTCGAAGCCACACGCGCGCCACAATTTCTTTTAATCCTCGGTGAGACGAGAGCACGAGACCCATCCCCAACGATCCCACATCCACGGCGCTGACTTCTCCAGCTCCACTCCACGTCTCCCAGCACGAGGGGAGGAGAAGAATCAAATCAAATCAATCAGTCGCAATCGAGGGGAATCCCACAATTCTGGACAATCCGAGACCCTGCCGCTCCGCTGGATTCCCCGACTCCCCTTCTTGGATTGGGCTAAACTGGGATGATTGGATTGCCGGCCGCGGTTTGAGCTGAGGAGATTCTTGCACACCAGGGGGGGAGGGATGGAGGTGAGCAAGGAGGAGTTCTTGAGGCAGTTCGGTGGCGACTATGGCTACCCGGGCGCGCCCAAGGGCGTCGACGAGATGCGCGCCGCCGAGTTCAAGCGGCTTGAAGGGATGGCTTACCTGGACCATGCCGGTGCGACGCTGTATTCAGAGGCGCAGATGGCGGATGTCTTGAAAGACCTTGCATCCAATGTATATGGGAACCCACATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTACTGCTGCACGCCATCAGGTTTTAAAATACTTCAATGCATCTCCCAGAGAATACAAGTGCATATTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCATGGAGTAGAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTGTGCTTGGGGATAGAGA] [+] EMBL CF320287 [CGTCGTCTACCTCGCGCCGCTCACCTCTCGCCGTCGTCGAAGCCACACGCGCGCCACAATTTCTTTTAATCCTCGGTGAGACGAGAGCACGAGACCCATCCCCAACGATCCCACATCCACGGCGCTGACTTCTCCAGCTCCACTCCACGTCTCCCAGCACGAGGGGAGGAGAAGAATCAAATCAAATCAATCAGTCGCAATCGAGGGGAATCCCACAATTCTGGACAATCCGAGACCCTGCCGCTCCGCTGGATTCCCCGACTCCCCTTCTTGGATTGGGCTAAACTGGGATGATTGGATTGCCGGCCGCGGTTTGAGCTGAGGAGATTCTTGCACACCAGGGGG ] [+] EMBL CB642109 [ CTCGCGCTGCTCACCTCTCGCCGTCGTCGAAGCCACACGCGCGCCACAATTTCTTTTAATCCTCGGTGAGACGAGAGCACGAGACCCATCCCCATTGATCCCACATCCACGGCGCTGACTTCTCCAGCTCCACTCCACGTTTCCCAGCACGAGGGGAGGAGAAGAATCAAATCAAATCAATCAGTCGCAATCGAGGGGAATCCCACAATTCTGGACAATCCGAGACCCTCCCGCTCCGCTGGATTCCCCGCCTCCCCTTCTTGGATTGGGCTCAGCTGGGATGATTGGATTGCCGGTCGCGGTTTGAGCTGAGGAGATTCTTGCAGTCGAGGGGGGGAGGGATGGAGGTGAGCAAGGAGGAGTTCTTGAGGCAGTTCGGTGGCGACTATGGCTACCCGGGCGCGCCCAAGGGCGTCGACGAGATGCGCGCCGCCGAGTTCAAGCGGCTTGAAGGGATGGCTTACCTGGACCATGCCGGTGCGACGCTGTATTCAGAGGCGCAGATGGCGGATGTCTTGAAAGACCTTGCATCCAATGTATATGGGAACCCACATAGTCAGAGTGATTCAAGCATGGCTGCGAGTGACCTCGTTACTGCTGCACGCCATCAGGTTTTAAAATACTTCAATGCATCTCCCAGAGAATACAAGTGCATATTTACCTCTGGGGCAACAGCAGCTCTGAAACTTGTTGGTGAATGTTTTCCATGGAGTAGAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTGTGCTTGGGGATAGAGA] consensusID : consensus_3987#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [GGAGGAGAAGAATCAAATCAAATCAATCAGTCGCAATCGAGGGGAATCCCACAATTCTGGACAATCCGAGACCCTCCCGCTCCGCTGGATTCCCCGCCTCCCCTTCTTGGATTGGGCTCAGCTGGGATGATTGGATTGCCGGTCGCGGTTTGAGCTGAGGAGATTCTTGCAGTCGAGGGGGGGAGGGATGGAGGTGAGCAAGGAGGAGTTCTTGAGGCAGTTCGGTGGCGACTATGGCTACCCGGGCGCGCCCAAGGGCGTCGACGAGATGCGCGCCGCCGAGTTCAAGCGGCTTGAAGGTGCGCCTAATCTCGACCTTGTCGATTCCCTTTTTGCCAAATTCTGGGAGGAAAAGTGGAATTCTATTAGTGTTTTGTGAGAACAAAAGGATGGATAGGAACTTGTGGCGTTCGGTCAGATGACCGCGTTTCTTGCTGTAACTCACTGTTGTATCGATAAATCTATTAGGTTTGTTGTTGCGGAGAGTGAAGAATCTAGCATCCTACCGAATTTTGCTACATAAGCTTCAACAATTGTGCTTGTTTTGATGTTTGGAACTGCAGTAGTGTGAGCTGCAAACTATGTAATAAGAATTGGCTATAGCTTCTATGAAAAAAA] [-] EMBL CF320288 [GGAGGAGAAGAATCAAATCAAATCAATCAGTCGCAATCGAGGGGAATCCCACAATTCTGGACAATCCGAGACCCTCCCGCTCCGCTGGATTCCCCGCCTCCCCTTCTTGGATTGGGCTCAGCTGGGATGATTGGATTGCCGGTCGCGGTTTGAGCTGAGGAGATTCTTGCAGTCGAGGGGGGGAGGGATGGAGGTGAGCAAGGAGGAGTTCTTGAGGCAGTTCGGTGGCGACTATGGCTACCCGGGCGCGCCCAAGGGCGTCGACGAGATGCGCGCCGCCGAGTTCAAGCGGCTTGAAGGTGCGCCTAATCTCGACCTTGTCGATTCCCTTTTTGCCAAATTCTGGGAGGAAAAGTGGAATTCTATTAGTGTTTTGTGAGAACAAAAGGATGGATAGGAACTTGTGGCGTTCGGTCAGATGACCGCGTTTCTTGCTGTAACTCACTGTTGTATCGATAAATCTATTAGGTTTGTTGTTGCGGAGAGTGAAGAATCTAGCATCCTACCGAATTTTGCTACATAAGCTTCAACAATTGTGCTTGTTTTGATGTTTGGAACTGCAGTAGTGTGAGCTGCAAACTATGTAATAAGAATTGGCTATAGCTTCTATGAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3987#0 CGTCGTCTACCTCGCGCCGCTCACCTCTCGCCGTCGTCGAAGCCACACGCGCGCCACAAT 60 consensus_3987#1 ------------------------------------------------------------ consensus_3987#0 TTCTTTTAATCCTCGGTGAGACGAGAGCACGAGACCCATCCCCAACGATCCCACATCCAC 120 consensus_3987#1 ------------------------------------------------------------ consensus_3987#0 GGCGCTGACTTCTCCAGCTCCACTCCACGTCTCCCAGCACGAGGGGAGGAGAAGAATCAA 180 consensus_3987#1 --------------------------------------------GGAGGAGAAGAATCAA 16 **************** consensus_3987#0 ATCAAATCAATCAGTCGCAATCGAGGGGAATCCCACAATTCTGGACAATCCGAGACCCTG 240 consensus_3987#1 ATCAAATCAATCAGTCGCAATCGAGGGGAATCCCACAATTCTGGACAATCCGAGACCCTC 76 *********************************************************** consensus_3987#0 CCGCTCCGCTGGATTCCCCGACTCCCCTTCTTGGATTGGGCTAAACTGGGATGATTGGAT 300 consensus_3987#1 CCGCTCCGCTGGATTCCCCGCCTCCCCTTCTTGGATTGGGCTCAGCTGGGATGATTGGAT 136 ******************** ********************* * *************** consensus_3987#0 TGCCGGCCGCGGTTTGAGCTGAGGAGATTCTTGCACACCAGGGGGGGAGGGATGGAGGTG 360 consensus_3987#1 TGCCGGTCGCGGTTTGAGCTGAGGAGATTCTTGCAGTCGAGGGGGGGAGGGATGGAGGTG 196 ****** **************************** * ********************* consensus_3987#0 AGCAAGGAGGAGTTCTTGAGGCAGTTCGGTGGCGACTATGGCTACCCGGGCGCGCCCAAG 420 consensus_3987#1 AGCAAGGAGGAGTTCTTGAGGCAGTTCGGTGGCGACTATGGCTACCCGGGCGCGCCCAAG 256 ************************************************************ consensus_3987#0 GGCGTCGACGAGATGCGCGCCGCCGAGTTCAAGCGGCTTGAAGGGATGGCTTACCTGGAC 480 consensus_3987#1 GGCGTCGACGAGATGCGCGCCGCCGAGTTCAAGCGGCTTGAAGGTGCGCCTAATCTCGAC 316 ******************************************** * ** * ** *** consensus_3987#0 CATGCCGGTGCGAC----GCTGTATTCAGAGGCGCAGATGGCGGATGTCTTGAAAGACCT 536 consensus_3987#1 CTTGTCGATTCCCTTTTTGCCAAATTCTGGGAGGAAAA--GTGGAATTCTATTAGTGTTT 374 * ** ** * * ** **** * * * * * * *** *** * * consensus_3987#0 TGC---ATCCAATGTAT--ATGGGAACCCACATAGTCAGAGTGATTCAA-GCATGGCTGC 590 consensus_3987#1 TGTGAGAACAAAAGGATGGATAGGAACTTGTGGCGTTCGGTCAGATGACCGCGTTTCTTG 434 ** * * ** * ** ** ***** ** * * * ** * ** consensus_3987#0 GAGTGACCTCGTTACTGCTGCACGCCATCAGGTTTTAAAATACTTCAATGCATCTCCCAG 650 consensus_3987#1 CTGTAAC----TCACTGTTGTAT-CGATAAATCTATTAGGTTTGTTGTTGCGGAGAGTGA 489 ** ** * **** ** * * ** * * * * * * *** consensus_3987#0 AGAATACAAGTGCATATTTACCTCTGGGGCAACAGC---AGCTCTGAAACTTGTTGGTGA 707 consensus_3987#1 AGAATCTAGCATCCTACCGAATTTTGCTACATAAGCTTCAACAATTGTGCTTGTT--TTG 547 ***** * * ** * * ** ** *** * * * ****** * consensus_3987#0 ATGTTTTCCA-TGGAGTAGAGAAAGCTGTTACATGTACACGATGGAGAATCACAATAGTG 766 consensus_3987#1 ATGTTTGGAACTGCAGTAGTGTGAGCTGCAAACTATGTA--ATAAGAATTGGCTATAGCT 605 ****** * ** ***** * ***** * * * * ** * * * **** consensus_3987#0 TGCTTGGGGATAGAGA 782 consensus_3987#1 TCTATGAAAAAAA--- 618 * ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||