These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3989#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1686 fasta sequence [CTTCCTCTCTAGAAATCAAGGGGAGGGCACCGCCACCGGAAGAGGGCAAGAAGAACGGCGAGAAGATGGCGGCCGCCGCCGCGATCCCGATCCCGATCCCCTGCGTCGCGGAGCCCACCGCGGCGTCCCGCGTCTCGCCGGGCTCGTCCCCCGCCCGCTCCGACGCCTCCGAGGGCGCCGCGTTCTACGCCGCCGACACCGAGGCCGAGCCGGAGGCGTCCGTCGGGAGGAGCACGCAGATGCTGCTCGCGATGGCCGCCATGGGCGGCCGCGGGGGGCCCTACGGCCGCCGCCCGGCGTCTTCCTACGGCAGCTGCGCCGCGTGGAGCGCCGGGTCGCTCACCGACCACCGCCCCGCCTCGCCGTCCCCAATCTGCAGCCCCGTGAGCAGCAATGGAGGGGAGGGCTGCCGCGACGGTGATGACGCCTCCTCGTTCGTCACGCCACGGCTGGAAGAAGACCAAGAAAGGCTGCCAAACAGAGGAGATTTCATAAATCCGTCTACCACACCACGACACATCAGACTGCAAACGCCCAGACAACCTTCCCTTCTGGATAGGAGATTTGAGAGAACTAATCCAGTGCCACCAAGATTCATCCACAAGGCCACGCCAGCTAGATTGATGCGCCGAGCTCGCTCCTCACATAATTACCGTAGGCGTTTGGGGGCAATGGATGCTATCAATGAATGGAGATTGCCCAAAGTCAGTGAAGAAGAGGATGAAGCAGTGGATCAAACGGATTGGCAGGCTGATACTCTGTCTTCTCGTATATCCTCAGCTCGTGATTGGAACTTTGAGGCTGGTGGTGCCTATGAGGGAAGTGATCATAATGGCGGTGCGTTTAACCATTCAGATGGCGAAAATAGCCCAGTTGCAGTGCAAAGAATGGGGAGATGGCCCCAGGGTTCTGCGGTAAAACATAAGGAAAATTTTGTCCACGCCAAGTTGGTTGCCTGGAAGAATGCGGAGATTGAAAAGCTCATAGACAAGCTGAGAAGGAAAGAGGCCGATATCGATGAATGGCAGATGAATCAGGTTACACAGGCAAAGGAGAAGATGAAAAGAATTGAGATCAAGTTGGAGAAGAAGAGAGCGAGAGCAGCAGAGAAGATGCAAAAGGCAATAAAAGATGCACAAAAGAAAGCTGATAAGAAGAAAATCAAGGAGCATGCAGCAACCGACAATCAGATAGCTAGTGTTGAGAGAGCAATGGTGAAGATGTCTAGGACAGGAAAGCTCCCCTGGTCACTGGCTTTTCTGTAAACGAGTTCTTCACTTGTGGTAGATCCAAGCAAGCCGATTGTTTTGAAACCTCTTGCCGAGATGCCAGCACGGAGAGACTAAAATGAGCGCACATGCTGTCAGTACTCAGAAGCAGTGCCAACTACTGAAATCAGAAAATTTGTTGTATATAATAGCAGTGGTTTGTCGTCCTTAGATGATAGAAGTTTCAGGCTGTATACCTGATTGGCATTTGAACACTGTTCTTAAACATGACACGAACAGTCAGGGCCAAATTATAGTACTTTCCCTTCTGTTGTGGTTTCAAGTACTGTTCTCAGGCACAACATTATTTCCCCAGTAGGATTTGGATGTACATGTACAGTGGCAAACTGACAAGTTTCTTGTTTTGGTATGATCTGATAATCCCTATATGCTCTCCTTTTCCATGCTGTTAAAAAAA] [+] EMBL AK120166 [CTTCCTCTCTAGAAATCAAGGGGAGGGCACCGCCACCGGAAGAGGGCAAGAAGAACGGCGAGAAGATGGCGGCCGCCGCCGCGATCCCGATCCCGATCCCCTGCGTCGCGGAGCCCACCGCGGCGTCCCGCGTCTCGCCGGGCTCGTCCCCCGCCCGCTCCGACGCCTCCGAGGGCGCCGCGTTCTACGCCGCCGACACCGAGGCCGAGCCGGAGGCGTCCGTCGGGAGGAGCACGCAGATGCTGCTCGCGATGGCCGCCATGGGCGGCCGCGGGGGGCCCTACGGCCGCCGCCCGGCGTCTTCCTACGGCAGCTGCGCCGCGTGGAGCGCCGGGTCGCTCACCGACCACCGCCCCGCCTCGCCGTCCCCAATCTGCAGCCCCGTGAGCAGCAATGGAGGGGAGGGCTGCCGCGACGGTGATGACGCCTCCTCGTTCGTCACGCCACGGCTGGAAGAAGACCAAGAAAGGCTGCCAAACAGAGGAGATTTCATAAATCCGTCTACCACACCACGACACATCAGACTGCAAACGCCCAGACAACCTTCCCTTCTGGATAGGAGATTTGAGAGAACTAATCCAGTGCCACCAAGATTCATCCACAAGGCCACGCCAGCTAGATTGATGCGCCGAGCTCGCTCCTCACATAATTACCGTAGGCGTTTGGGGGCAATGGATGCTATCAATGAATGGAGATTGCCCAAAGTCAGTGAAGAAGAGGATGAAGCAGTGGATCAAACGGATTGGCAGGCTGATACTCTGTCTTCTCGTATATCCTCAGCTCGTGATTGGAACTTTGAGGCTGGTGGTGCCTATGAGGGAAGTGATCATAATGGCGGTGCGTTTAACCATTCAGATGGCGAAAATAGCCCAGTTGCAGTGCAAAGAATGGGGAGATGGCCCCAGGGTTCTGCGGTAAAACATAAGGAAAATTTTGTCCACGCCAAGTTGGTTGCCTGGAAGAATGCGGAGATTGAAAAGCTCATAGACAAGCTGAGAAGGAAAGAGGCCGATATCGATGAATGGCAGATGAATCAGGTTACACAGGCAAAGGAGAAGATGAAAAGAATTGAGATCAAGTTGGAGAAGAAGAGAGCGAGAGCAGCAGAGAAGATGCAAAAGGCAATAAAAGATGCACAAAAGAAAGCTGATAAGAAGAAAATCAAGGAGCATGCAGCAACCGACAATCAGATAGCTAGTGTTGAGAGAGCAATGGTGAAGATGTCTAGGACAGGAAAGCTCCCCTGGTCACTGGCTTTTCTGTAAACGAGTTCTTCACTTGTGGTAGATCCAAGCAAGCCGATTGTTTTGAAACCTCTTGCCGAGATGCCAGCACGGAGAGACTAAAATGAGCGCACATGCTGTCAGTACTCAGAAGCAGTGCCAACTACTGAAATCAGAAAATTTGTTGTATATAATAGCAGTGGTTTGTCGTCCTTAGATGATAGAAGTTTCAGGCTGTATACCTGATTGGCATTTGAACACTGTTCTTAAACATGACACGAACAGTCAGGGCCAAATTATAGTACTTTCCCTTCTGTTGTGGTTTCAAGTACTGTTCTCAGGCACAACATTATTTCCCCAGTAGGATTTGGATGTACATGTACAGTGGCAAACTGACAAGTTTCTTGTTTTG ] [-] EMBL CF329188 [ GAGCAATGGTGAAGATGTCTAGGACAGGAAAGCTCCCCTGGTCACTGGCTTTTCTGTAAACGAGTTCTTCACTTGTGGTAGATCCAAGCAAGCCGATTGTTTTGAAACCTCTTGCCGAGATGCCAGCACGGAGAGACTAAAATGAGCGCACATGCTGTCAGTACTCAGAAGCAGTGCCAACTACTGAAATCAGAAAATTTGTTGTATATAATAGCAGTGGTTTGTCGTCCTTAGATGATAGAAGTTTCAGGCTGTATACCTGATTGGCATTTGAACACTGTTCTTAAACATGACACGAACAGTCAGGGCCAAATTATAGTACTTTCCCTTCTGTTGTGGTTTCAAGTACTGTTCTCAGGCACAACATTATTTCCCCAGTAGGATTTGGATGTACATGTACAGTGGCAAACTGACAAGTTTCTTGTTTTGGTATGATCTGATAATCCCTATATGCTCTCCTTTTCCATGCTGTTAAAAAAA] consensusID : consensus_3989#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [TGACTGGACTGAAGGAGTAGAAACTAATCCAGTGCCACCAAGATTCATCCACAAGGCCACGCCAGCTAGGTTGATGCGCCGAGCTCGCTCCTCACATAATTACCGTAGGCGTTTGGGGGCAATGGATGCTATCAATGAATGGAGATTGCCCAAAGTCAGTGAAGAAGAGGATGAAGCAGTGGATCAAACGGATTGGCAGGCTGATACTCTGTCTTCTCGTATATCCTCAGGTACTGATCTAAATCTCATGAGTCTCGTCAGTTCTGAAAAATATTTTTTATGACAATTCTTTCATCTGCAGCT] [+] EMBL CF329187 [TGACTGGACTGAAGGAGTAGAAACTAATCCAGTGCCACCAAGATTCATCCACAAGGCCACGCCAGCTAGGTTGATGCGCCGAGCTCGCTCCTCACATAATTACCGTAGGCGTTTGGGGGCAATGGATGCTATCAATGAATGGAGATTGCCCAAAGTCAGTGAAGAAGAGGATGAAGCAGTGGATCAAACGGATTGGCAGGCTGATACTCTGTCTTCTCGTATATCCTCAGGTACTGATCTAAATCTCATGAGTCTCGTCAGTTCTGAAAAATATTTTTTATGACAATTCTTTCATCTGCAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3989#0 CTTCCTCTCTAGAAATCAAGGGGAGGGCACCGCCACCGGAAGAGGGCAAGAAGAACGGCG 60 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 AGAAGATGGCGGCCGCCGCCGCGATCCCGATCCCGATCCCCTGCGTCGCGGAGCCCACCG 120 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 CGGCGTCCCGCGTCTCGCCGGGCTCGTCCCCCGCCCGCTCCGACGCCTCCGAGGGCGCCG 180 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 CGTTCTACGCCGCCGACACCGAGGCCGAGCCGGAGGCGTCCGTCGGGAGGAGCACGCAGA 240 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 TGCTGCTCGCGATGGCCGCCATGGGCGGCCGCGGGGGGCCCTACGGCCGCCGCCCGGCGT 300 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 CTTCCTACGGCAGCTGCGCCGCGTGGAGCGCCGGGTCGCTCACCGACCACCGCCCCGCCT 360 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 CGCCGTCCCCAATCTGCAGCCCCGTGAGCAGCAATGGAGGGGAGGGCTGCCGCGACGGTG 420 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 ATGACGCCTCCTCGTTCGTCACGCCACGGCTGGAAGAAGACCAAGAAAGGCTGCCAAACA 480 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 GAGGAGATTTCATAAATCCGTCTACCACACCACGACACATCAGACTGCAAACGCCCAGAC 540 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 AACCTTCCCTTCTGGATAGGAGATTTGAGAGAACTAATCCAGTGCCACCAAGATTCATCC 600 consensus_3989#1 --------TGACTGGACTGAAGG--AGTAGAAACTAATCCAGTGCCACCAAGATTCATCC 50 ***** * ** * ***************************** consensus_3989#0 ACAAGGCCACGCCAGCTAGATTGATGCGCCGAGCTCGCTCCTCACATAATTACCGTAGGC 660 consensus_3989#1 ACAAGGCCACGCCAGCTAGGTTGATGCGCCGAGCTCGCTCCTCACATAATTACCGTAGGC 110 ******************* **************************************** consensus_3989#0 GTTTGGGGGCAATGGATGCTATCAATGAATGGAGATTGCCCAAAGTCAGTGAAGAAGAGG 720 consensus_3989#1 GTTTGGGGGCAATGGATGCTATCAATGAATGGAGATTGCCCAAAGTCAGTGAAGAAGAGG 170 ************************************************************ consensus_3989#0 ATGAAGCAGTGGATCAAACGGATTGGCAGGCTGATACTCTGTCTTCTCGTATATCCTCAG 780 consensus_3989#1 ATGAAGCAGTGGATCAAACGGATTGGCAGGCTGATACTCTGTCTTCTCGTATATCCTCAG 230 ************************************************************ consensus_3989#0 CTCGTGATTGGAACTTTGAGGCTGGTGGTGCCTATGAGGGAAGTGATCATAATGGCGGTG 840 consensus_3989#1 GTACTGATCTAAATCTCATGAGTCTCGTCAGTTCTGA--AAAATATTTTTTATGACAATT 288 * **** ** * * * * * *** ** * * * *** * * consensus_3989#0 CGTTTAACCATTCAGATGGCGAAAATAGCCCAGTTGCAGTGCAAAGAATGGGGAGATGGC 900 consensus_3989#1 CTTTCATCTG--CAGCT------------------------------------------- 303 * ** * * *** * consensus_3989#0 CCCAGGGTTCTGCGGTAAAACATAAGGAAAATTTTGTCCACGCCAAGTTGGTTGCCTGGA 960 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 AGAATGCGGAGATTGAAAAGCTCATAGACAAGCTGAGAAGGAAAGAGGCCGATATCGATG 1020 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 AATGGCAGATGAATCAGGTTACACAGGCAAAGGAGAAGATGAAAAGAATTGAGATCAAGT 1080 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 TGGAGAAGAAGAGAGCGAGAGCAGCAGAGAAGATGCAAAAGGCAATAAAAGATGCACAAA 1140 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 AGAAAGCTGATAAGAAGAAAATCAAGGAGCATGCAGCAACCGACAATCAGATAGCTAGTG 1200 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 TTGAGAGAGCAATGGTGAAGATGTCTAGGACAGGAAAGCTCCCCTGGTCACTGGCTTTTC 1260 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 TGTAAACGAGTTCTTCACTTGTGGTAGATCCAAGCAAGCCGATTGTTTTGAAACCTCTTG 1320 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 CCGAGATGCCAGCACGGAGAGACTAAAATGAGCGCACATGCTGTCAGTACTCAGAAGCAG 1380 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 TGCCAACTACTGAAATCAGAAAATTTGTTGTATATAATAGCAGTGGTTTGTCGTCCTTAG 1440 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 ATGATAGAAGTTTCAGGCTGTATACCTGATTGGCATTTGAACACTGTTCTTAAACATGAC 1500 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 ACGAACAGTCAGGGCCAAATTATAGTACTTTCCCTTCTGTTGTGGTTTCAAGTACTGTTC 1560 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 TCAGGCACAACATTATTTCCCCAGTAGGATTTGGATGTACATGTACAGTGGCAAACTGAC 1620 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 AAGTTTCTTGTTTTGGTATGATCTGATAATCCCTATATGCTCTCCTTTTCCATGCTGTTA 1680 consensus_3989#1 ------------------------------------------------------------ consensus_3989#0 AAAAAA 1686 consensus_3989#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||