cluster # 3991

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Oryza sativa
cluster # 3991 cluster # 3991 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3991#0 length = 641 sequences # 1

consensus_3991#1 length = 628 sequences # 1
consensus_3991#2 length = 197 sequences # 1

consensusID : consensus_3991#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence

                              [GGTCAGGCTCTACATGGCATTAAACCACCCCTGTTGGCTGAATTACTCCTGCCTGGTTCCTTATTGGAAGGTGAACGTAACAAACAGTAAGCCAAAGCTGCTCTGTTGGAGACAATAAAATCTCATCTTGTCAAGGCTCAATCCCGTATGAAATACTTTGCCGATCAACATAGCCAAGAACGCACACTTGAAGTTGGCGATATGGTCTACCTTAAAATGCAACCATATCGACATAATTCACTGGGTCTTCATCCTTCCTTGAAACTTCACTCCAGGTACTATGGGCCATTCAGAGTTCTGGAGCGCATTGGTTCAGTTGCTTACAAGCTTTTGCTACCTGCTACTAGCCAAATACATCCTGTCTTCCATGTCAGCCAGTCAAAGAAACATCTGGGCTCTCATCCAGAACATACCAAAAGCAAAAAAAAGATTGATGCTGATGGCAGGATTCTCTCTACCCCATTGGCAGTGCTCGATCGTCCCCTTATACCTAGACACAATGAACCAGTGGGTCAGTGGAAATTCATGGGGCTACCCACCAGAATCGCTGCAACTGGGAGGATGTGCGTTTATTACAAGTATTCCTCTTCACTCCAGAGGACCTGATCTAGGGGGGAAATTGTAGACTGATAAATCCACTT]

[+] EMBL CA753308             [GGTCAGGCTCTACATGGCATTAAACCACCCCTGTTGGCTGAATTACTCCTGCCTGGTTCCTTATTGGAAGGTGAACGTAACAAACAGTAAGCCAAAGCTGCTCTGTTGGAGACAATAAAATCTCATCTTGTCAAGGCTCAATCCCGTATGAAATACTTTGCCGATCAACATAGCCAAGAACGCACACTTGAAGTTGGCGATATGGTCTACCTTAAAATGCAACCATATCGACATAATTCACTGGGTCTTCATCCTTCCTTGAAACTTCACTCCAGGTACTATGGGCCATTCAGAGTTCTGGAGCGCATTGGTTCAGTTGCTTACAAGCTTTTGCTACCTGCTACTAGCCAAATACATCCTGTCTTCCATGTCAGCCAGTCAAAGAAACATCTGGGCTCTCATCCAGAACATACCAAAAGCAAAAAAAAGATTGATGCTGATGGCAGGATTCTCTCTACCCCATTGGCAGTGCTCGATCGTCCCCTTATACCTAGACACAATGAACCAGTGGGTCAGTGGAAATTCATGGGGCTACCCACCAGAATCGCTGCAACTGGGAGGATGTGCGTTTATTACAAGTATTCCTCTTCACTCCAGAGGACCTGATCTAGGGGGGAAATTGTAGACTGATAAATCCACTT]




>consensus_3991#0
GGTCAGGCTCTACATGGCATTAAACCACCCCTGTTGGCTGAATTACTCCTGCCTGGTTCC
TTATTGGAAGGTGAACGTAACAAACAGTAAGCCAAAGCTGCTCTGTTGGAGACAATAAAA
TCTCATCTTGTCAAGGCTCAATCCCGTATGAAATACTTTGCCGATCAACATAGCCAAGAA
CGCACACTTGAAGTTGGCGATATGGTCTACCTTAAAATGCAACCATATCGACATAATTCA
CTGGGTCTTCATCCTTCCTTGAAACTTCACTCCAGGTACTATGGGCCATTCAGAGTTCTG
GAGCGCATTGGTTCAGTTGCTTACAAGCTTTTGCTACCTGCTACTAGCCAAATACATCCT
GTCTTCCATGTCAGCCAGTCAAAGAAACATCTGGGCTCTCATCCAGAACATACCAAAAGC
AAAAAAAAGATTGATGCTGATGGCAGGATTCTCTCTACCCCATTGGCAGTGCTCGATCGT
CCCCTTATACCTAGACACAATGAACCAGTGGGTCAGTGGAAATTCATGGGGCTACCCACC
AGAATCGCTGCAACTGGGAGGATGTGCGTTTATTACAAGTATTCCTCTTCACTCCAGAGG
ACCTGATCTAGGGGGGAAATTGTAGACTGATAAATCCACTT

consensusID : consensus_3991#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [TGGCCCATTCAGAGTTTTGGAGCGCATTGGTTCAGTTGCTTACAAGCTTTTGTTCCCTGTTACTAGCCAAATACATCCTGTTTTCCATGTCAGCCAGTTAAAGAAACATCTGGGTTTTGGTGCTGTCCCTGAACAAGCCCTCCCTTTGATTGATGCTGAGGGCAGGATTTTTTTTCCCCCATTGGCAGTGTTCGATCGTCCCCTTATCCCTAGAAACAATGACCCAGTGGTGCAGTGGAAAATTCATTGGGTTACCTTCCCAGAATCAGTTGCAACTTGGGAGGATGTTGCGTTTATTCCCAAAGTATTTCCTTTTTTCACTCCAGGAGGACATGGTTTTTAAGGGGGGAGAATTGTGAGCCCTGAAGAAGATTCAGACTTAAAGTTCAGAGTTAAGAGATAGCTGGAATAGATTCACCGGTGGAGATTGGGAGATCCCGATTCGCGAGAAGGTTATGAAGATGGTGTGGCCCAGATTCCCCGCGACGAGTTCCAGAGGGGAAGAATTCCCGTCCTGTGGGGGTCATCGTCGTTGTCGTTTAGCTAGGGGCGTACTCAATATAAGCCCGAGCTTTTGGCTGTAACTTTTTATCAAACTTGACCCCTAATATAATTTCCCGTCTTGTTC]

[-] EMBL CB631598             [TGGCCCATTCAGAGTTTTGGAGCGCATTGGTTCAGTTGCTTACAAGCTTTTGTTCCCTGTTACTAGCCAAATACATCCTGTTTTCCATGTCAGCCAGTTAAAGAAACATCTGGGTTTTGGTGCTGTCCCTGAACAAGCCCTCCCTTTGATTGATGCTGAGGGCAGGATTTTTTTTCCCCCATTGGCAGTGTTCGATCGTCCCCTTATCCCTAGAAACAATGACCCAGTGGTGCAGTGGAAAATTCATTGGGTTACCTTCCCAGAATCAGTTGCAACTTGGGAGGATGTTGCGTTTATTCCCAAAGTATTTCCTTTTTTCACTCCAGGAGGACATGGTTTTTAAGGGGGGAGAATTGTGAGCCCTGAAGAAGATTCAGACTTAAAGTTCAGAGTTAAGAGATAGCTGGAATAGATTCACCGGTGGAGATTGGGAGATCCCGATTCGCGAGAAGGTTATGAAGATGGTGTGGCCCAGATTCCCCGCGACGAGTTCCAGAGGGGAAGAATTCCCGTCCTGTGGGGGTCATCGTCGTTGTCGTTTAGCTAGGGGCGTACTCAATATAAGCCCGAGCTTTTGGCTGTAACTTTTTATCAAACTTGACCCCTAATATAATTTCCCGTCTTGTTC]




>consensus_3991#1
TGGCCCATTCAGAGTTTTGGAGCGCATTGGTTCAGTTGCTTACAAGCTTTTGTTCCCTGT
TACTAGCCAAATACATCCTGTTTTCCATGTCAGCCAGTTAAAGAAACATCTGGGTTTTGG
TGCTGTCCCTGAACAAGCCCTCCCTTTGATTGATGCTGAGGGCAGGATTTTTTTTCCCCC
ATTGGCAGTGTTCGATCGTCCCCTTATCCCTAGAAACAATGACCCAGTGGTGCAGTGGAA
AATTCATTGGGTTACCTTCCCAGAATCAGTTGCAACTTGGGAGGATGTTGCGTTTATTCC
CAAAGTATTTCCTTTTTTCACTCCAGGAGGACATGGTTTTTAAGGGGGGAGAATTGTGAG
CCCTGAAGAAGATTCAGACTTAAAGTTCAGAGTTAAGAGATAGCTGGAATAGATTCACCG
GTGGAGATTGGGAGATCCCGATTCGCGAGAAGGTTATGAAGATGGTGTGGCCCAGATTCC
CCGCGACGAGTTCCAGAGGGGAAGAATTCCCGTCCTGTGGGGGTCATCGTCGTTGTCGTT
TAGCTAGGGGCGTACTCAATATAAGCCCGAGCTTTTGGCTGTAACTTTTTATCAAACTTG
ACCCCTAATATAATTTCCCGTCTTGTTC

consensusID : consensus_3991#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 197
fasta sequence

                              [CCGCCCACGCGTCCGGAAGATCGTGTGGCCCAGATTCGCCGCGACGAGCTACAGAGGGGAAGAATTGCCGTACTGTGGGCGTCATCGTCGTTGTCGTTTAGCTATGGGCGTACTCAATATAAGCCCGAGCTTTTGGCTGTAACTTTTTATCAACTTGAACCCTAATATAATTTCCCCTCTTGTTCTTGCGGCCAAAA]

[+] EMBL BM038745             [CCGCCCACGCGTCCGGAAGATCGTGTGGCCCAGATTCGCCGCGACGAGCTACAGAGGGGAAGAATTGCCGTACTGTGGGCGTCATCGTCGTTGTCGTTTAGCTATGGGCGTACTCAATATAAGCCCGAGCTTTTGGCTGTAACTTTTTATCAACTTGAACCCTAATATAATTTCCCCTCTTGTTCTTGCGGCCAAAA]




>consensus_3991#2
CCGCCCACGCGTCCGGAAGATCGTGTGGCCCAGATTCGCCGCGACGAGCTACAGAGGGGA
AGAATTGCCGTACTGTGGGCGTCATCGTCGTTGTCGTTTAGCTATGGGCGTACTCAATAT
AAGCCCGAGCTTTTGGCTGTAACTTTTTATCAACTTGAACCCTAATATAATTTCCCCTCT
TGTTCTTGCGGCCAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3991#1      TGGCCCATTCAGAGTTTTGGAGCGCATTGGTTCAGTTGCTTACAAGCTTTTGTTCCCTGT 60
consensus_3991#2      ------------------------------------------------------------
consensus_3991#0      ------------------------------------------------------------
                                                                                  

consensus_3991#1      TACTAGCCAAATACATCCTGTTTTCCATGTCAGCCAGTTAAAGAAACATCTGGGTTTTGG 120
consensus_3991#2      ------------------------------------------------------------
consensus_3991#0      ----GGTCAGGCTCTACATGGCATTAAACCACCCCTGTTGGCTGAATTACTCCTGCCTGG 56
                                                                                  

consensus_3991#1      TGCTGTCCCTGAACAAGCCCTCCCTTTGATTGATGCTGAGGGCAGGATTTTTTTTCCCCC 180
consensus_3991#2      ------------------------------------------------------------
consensus_3991#0      TTCCTTATTGGAAGGTGAACGTAACAAACAGTAAGCCAAAGCTGCTCTGTTGGAGACAAT 116
                                                                                  

consensus_3991#1      ATTGGCAGTGTTCGATCGTCCCCTTATCCCTAGAAACAATGACCCAGTGGTGCAGTGGAA 240
consensus_3991#2      ------------------------------------------------------------
consensus_3991#0      AAAATCTCATCTTGTCAAGGCTCAATCCCGTATGAAATACTTTGCCGATCAACATAGCCA 176
                                                                                  

consensus_3991#1      AATTCATTGGGTTACCTTCCCAGAATCAGTTGCAACTTGGGAGGATGTTGCGTTTATTCC 300
consensus_3991#2      ------------------------------------------------------------
consensus_3991#0      AGAACGCACACTTGAAGTTGGCGATATGGTCTACCTTAAAATGCAACCATATCGACATAA 236
                                                                                  

consensus_3991#1      CAAAGTATTTCCTTTTTTCACTCCAGGAGGACATGGTTTTTAAGGGGGGAGAATTGTGAG 360
consensus_3991#2      ------------------------------------------------------------
consensus_3991#0      TTCACTGGGTCTTCATCCTTCCTTGAAACTTCACTCCAGGTACTATGGGCCATTCAGAGT 296
                                                                                  

consensus_3991#1      CCCTGAAGAAGATTCAGACTTAAAGTTCAGAGTTAAGAGATAGCTGGAATAGATTCACCG 420
consensus_3991#2      ------------------------------------------------------------
consensus_3991#0      TCTGGAGCGCATTGGTTCAGTTGCTTACAAGCTTTTGCTACCTGCTACTAGCCAAATACA 356
                                                                                  

consensus_3991#1      GTGGAGATTGGGAGATCCCGATTCGCGAGAAGGTTATGAAGATGGTGTGGCCCAGATTCC 480
consensus_3991#2      ----------------------CCGCCCACGCGTCCGGAAGATCGTGTGGCCCAGATTCG 38
consensus_3991#0      TCCTGTCTTCCATGTCAGCCAGTCAAAGAAACATCTGGGCTCTCATCCAGAACATACCAA 416
                                             *         *   *    *  *   *  ** *    

consensus_3991#1      CCGCGACGA-------GTTCCAGAGGGGAAGAATTCCCGTCCTG---TGGGGGTCATCG- 529
consensus_3991#2      CCGCGACGA-------GCTACAGAGGGGAAGAATTGCCGTACTG---TGGGCGTCATCG- 87
consensus_3991#0      AAGCAAAAAAAAGATTGATGCTGATGGCAGGATTCTCTCTACCCCATTGGCAGTGCTCGA 476
                        ** *  *       * * * ** ** * ** *  *  * *     ***  **  *** 

consensus_3991#1      TCGTTGTCGTTTAGCTAGGGGC---GTAC-------TCAATATAAGCCC---GAGCTTTT 576
consensus_3991#2      TCGTTGTCGTTTAGCTATGGGC---GTAC-------TCAATATAAGCCC---GAGCTTTT 134
consensus_3991#0      TCGTCCCCTTATACCTAGACACAATGAACCAGTGGGTCAGTGGAAATTCATGGGGCTACC 536
                      ****   * * ** ***    *   * **       *** *  **   *   * ***   

consensus_3991#1      GGCTGTAACTTTT-----TATCAAACTTGACCCCTAATATAATTTCCCGTCTT-GTTC-- 628
consensus_3991#2      GGCTGTAACTTTT-----TATCAA-CTTGAACCCTAATATAATTTCCCCTCTT-GTTCTT 187
consensus_3991#0      CACCAGAATCGCTGCAACTGGGAGGATGTGCGTTTATTACAAGTATTCCTCTTCACTCCA 596
                        *   **    *     *   *   *       ** ** ** *   * ****   **  

consensus_3991#1      ---------------------------------------------
consensus_3991#2      GCGGCCAAAA----------------------------------- 197
consensus_3991#0      GAGGACCTGATCTAGGGGGGAAATTGTAGACTGATAAATCCACTT 641