cluster # 3994

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Oryza sativa
cluster # 3994 cluster # 3994 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3994#0 length = 769 sequences # 2

consensus_3994#1 length = 556 sequences # 1

consensusID : consensus_3994#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 769
fasta sequence

                              [CAAAAAAACAAAACAAAAAAAGTAGTTGATCTCCTCGCGGCGGCGCTCTCTCTCTCTCTCCGCCGGCGACGATGGCCACGGCGAACGGCGTCGACCTCGCGACGGCGGGGCTCCTGCGGCTGCTGGCGATGGGGATGGGGCCGTCCGTGCAGATTCCGGGAGAAGGCGGGGTTCCGGTGATGATGGTGCAGCACATCATCATCGGCGACGACGGCGGCGACCTGTTCTCCGGCGGGCTCGGCGGCGGCGTGCCCCCCGCGTCGAAGGCGGCGATCGCCTCGCTGAAGGAGGTGAAGGCCGGGGAGGACGGCGAAGGCGGGGACTCGCTGGGCGACTGCGCGATCTGCCTGGACGCCTTCGCCGCCGGGAAGGAGATGCCGTGCGGGCACCGGTTCCACAGCGAGTGCCTAGAGCGGTGGCTCGGCGTCCACGGGAGCTGCCCCGTCTGCCGCCGCGAGCTCCCAGCGGCGGAACAACAACCACCAGAGGAGCAGCAGAGCGGCGGCGCGGACGCCGGCGAGAGGCGGAGGCCGAGGGCGGTGGTGGTGAGCTACGTGGTGCTCGGAGACGGCGGCCGCGGCGGGGAGAGAGGGGAGCCATGGAACATTAGGATAGAGGACGTGGATTAGGACCAGGATTATATTCTTCAAATTGGTTTCAATTGGTTTTAAGGTGGTCGATTTTTCTTTCGGTTTTTGTATATACACTACTAGCTGCGAGGGGAGAAAAATCGATTGTGAATATTTTTTAAATGTGGAAAATGAAAGTA]

[+] EMBL AK120260             [CAAAAAAACAAAACAAAAAAAGTAGTTGATCTCCTCGCGGCGGCGCTCTCTCTCTCTCTCCGCCGGCGACGATGGCCACGGCGAACGGCGTCGACCTCGCGACGGCGGGGCTCCTGCGGCTGCTGGCGATGGGGATGGGGCCGTCCGTGCAGATTCCGGGAGAAGGCGGGGTTCCGGTGATGATGGTGCAGCACATCATCATCGGCGACGACGGCGGCGACCTGTTCTCCGGCGGGCTCGGCGGCGGCGTGCCCCCCGCGTCGAAGGCGGCGATCGCCTCGCTGAAGGAGGTGAAGGCCGGGGAGGACGGCGAAGGCGGGGACTCGCTGGGCGACTGCGCGATCTGCCTGGACGCCTTCGCCGCCGGGAAGGAGATGCCGTGCGGGCACCGGTTCCACAGCGAGTGCCTAGAGCGGTGGCTCGGCGTCCACGGGAGCTGCCCCGTCTGCCGCCGCGAGCTCCCAGCGGCGGAACAACAACCACCAGAGGAGCAGCAGAGCGGCGGCGCGGACGCCGGCGAGAGGCGGAGGCCGAGGGCGGTGGTGGTGAGCTACGTGGTGCTCGGAGACGGCGGCCGCGGCGGGGAGAGAGGGGAGCCATGGAACATTAGGATAGAGGACGTGGATTAGGACCAGGATTATATTCTTCAAATTGGTTTCAATTGGTTTTAAGGTGGTCGATTTTTCTTTCGGTTTTTGTATATACACTACTAGCTGCGAGGGGAGAAAAATCGATTGTGAATATTTTTTAAATGTGGAAAATGAAAGTA]
[+] EMBL C29177               [                      TAGTTNATCTCCTCGCGGCGGCGCTCTCTCTCTCTCTCCGCCGGCNACGATGGCCACGGCGAACGGCGTCGACCTCGCNACGGCGGGGCTCCTGCGGCTGCTGGCGATGGGGATGGGGCCGTCCGTGCAGATTCCGGGAGAAGGCGGGGTTCCGGTNATGATGGTGCAGCACATCATCATCGGCGACGACGGCGGCNACCTGTTCTCCGGCGGGCTCGGCGNCGGCGTGCCCCCCGCTTCGAAGGCGGCGATCG TTCGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]




>consensus_3994#0
CAAAAAAACAAAACAAAAAAAGTAGTTGATCTCCTCGCGGCGGCGCTCTCTCTCTCTCTC
CGCCGGCGACGATGGCCACGGCGAACGGCGTCGACCTCGCGACGGCGGGGCTCCTGCGGC
TGCTGGCGATGGGGATGGGGCCGTCCGTGCAGATTCCGGGAGAAGGCGGGGTTCCGGTGA
TGATGGTGCAGCACATCATCATCGGCGACGACGGCGGCGACCTGTTCTCCGGCGGGCTCG
GCGGCGGCGTGCCCCCCGCGTCGAAGGCGGCGATCGCCTCGCTGAAGGAGGTGAAGGCCG
GGGAGGACGGCGAAGGCGGGGACTCGCTGGGCGACTGCGCGATCTGCCTGGACGCCTTCG
CCGCCGGGAAGGAGATGCCGTGCGGGCACCGGTTCCACAGCGAGTGCCTAGAGCGGTGGC
TCGGCGTCCACGGGAGCTGCCCCGTCTGCCGCCGCGAGCTCCCAGCGGCGGAACAACAAC
CACCAGAGGAGCAGCAGAGCGGCGGCGCGGACGCCGGCGAGAGGCGGAGGCCGAGGGCGG
TGGTGGTGAGCTACGTGGTGCTCGGAGACGGCGGCCGCGGCGGGGAGAGAGGGGAGCCAT
GGAACATTAGGATAGAGGACGTGGATTAGGACCAGGATTATATTCTTCAAATTGGTTTCA
ATTGGTTTTAAGGTGGTCGATTTTTCTTTCGGTTTTTGTATATACACTACTAGCTGCGAG
GGGAGAAAAATCGATTGTGAATATTTTTTAAATGTGGAAAATGAAAGTA

consensusID : consensus_3994#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence

                              [TGGCGCGGCGCTCTCTCTCTTTTCCCCGCCGACGATGCCCACGGCGACGGCGTCGACCTCGCGACGCGGGGCTCCTGCAGGCTGCTGACGATGGGAGATGGGCACGTCCGATGCAGATTCCAGGCAGAAGTGCGTGGGTTCTCGTTGATGAGTGGTCAGCACATCATCATCGTGCGACGACGGACGCACGACCTGTTCTCCGGCGGGCTCGCGCGGCGTGCCACCCCGCGTCAGAAGGCGGCAGATCGCCTCGCATGAAGGAGCGTGAAGGCCGGGGAGGACGAGCGAAGGCGGGGACTCAGCTGGCGCGACTGCGCGATCTGCCTGGACGCCATTCAGCCGCCCGGGAAGGAGACTGCCGTCGCAGGGACACACGGTTCCACAGCGAGCTCGCCATCAGAACAGGTGGCTCGGCGTCCACGGGAGCTGCCCCGTCTGCCGCCGCGAGCTCCCCCCGGCGGATACAAACAACCACCAGAGGAGCAGCAGAACGGCGGCGCGGGACAGCCGGCGAGAGGCGGAGGCCGAGGTCGGTGCTGGTGAGCTACGTGGTGCT]

[+] EMBL BI796117             [TGGCGCGGCGCTCTCTCTCTTTTCCCCGCCGACGATGCCCACGGCGACGGCGTCGACCTCGCGACGCGGGGCTCCTGCAGGCTGCTGACGATGGGAGATGGGCACGTCCGATGCAGATTCCAGGCAGAAGTGCGTGGGTTCTCGTTGATGAGTGGTCAGCACATCATCATCGTGCGACGACGGACGCACGACCTGTTCTCCGGCGGGCTCGCGCGGCGTGCCACCCCGCGTCAGAAGGCGGCAGATCGCCTCGCATGAAGGAGCGTGAAGGCCGGGGAGGACGAGCGAAGGCGGGGACTCAGCTGGCGCGACTGCGCGATCTGCCTGGACGCCATTCAGCCGCCCGGGAAGGAGACTGCCGTCGCAGGGACACACGGTTCCACAGCGAGCTCGCCATCAGAACAGGTGGCTCGGCGTCCACGGGAGCTGCCCCGTCTGCCGCCGCGAGCTCCCCCCGGCGGATACAAACAACCACCAGAGGAGCAGCAGAACGGCGGCGCGGGACAGCCGGCGAGAGGCGGAGGCCGAGGTCGGTGCTGGTGAGCTACGTGGTGCT]




>consensus_3994#1
TGGCGCGGCGCTCTCTCTCTTTTCCCCGCCGACGATGCCCACGGCGACGGCGTCGACCTC
GCGACGCGGGGCTCCTGCAGGCTGCTGACGATGGGAGATGGGCACGTCCGATGCAGATTC
CAGGCAGAAGTGCGTGGGTTCTCGTTGATGAGTGGTCAGCACATCATCATCGTGCGACGA
CGGACGCACGACCTGTTCTCCGGCGGGCTCGCGCGGCGTGCCACCCCGCGTCAGAAGGCG
GCAGATCGCCTCGCATGAAGGAGCGTGAAGGCCGGGGAGGACGAGCGAAGGCGGGGACTC
AGCTGGCGCGACTGCGCGATCTGCCTGGACGCCATTCAGCCGCCCGGGAAGGAGACTGCC
GTCGCAGGGACACACGGTTCCACAGCGAGCTCGCCATCAGAACAGGTGGCTCGGCGTCCA
CGGGAGCTGCCCCGTCTGCCGCCGCGAGCTCCCCCCGGCGGATACAAACAACCACCAGAG
GAGCAGCAGAACGGCGGCGCGGGACAGCCGGCGAGAGGCGGAGGCCGAGGTCGGTGCTGG
TGAGCTACGTGGTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3994#0      CAAAAAAACAAAACAAAAAAAGTAGTTGATCTCCTCGCGGCGGCGCTCTCTCTCTCTCTC 60
consensus_3994#1      -------------------------------------TGGCGCGGCGCTCTCTCTCTTTT 23
                                                            ****  ** ********** * 

consensus_3994#0      CGCCGGCGACGATGGCCACGGCGAACGGCGTCGACCTCGCGACGGCGGGGCTCCTGC-GG 119
consensus_3994#1      CCCCGCCGACGATGCCCACGGCGA-CGGCGTCGACCTCGCGACG-CGGGGCTCCTGCAGG 81
                      * *** ******** ********* ******************* ************ **

consensus_3994#0      CTGCTGGCGATGGG-GATGGGGCCGTCCG-TGCAGATTCCGGG-AGAAG---GCGGGGTT 173
consensus_3994#1      CTGCTGACGATGGGAGATGGGCACGTCCGATGCAGATTCCAGGCAGAAGTGCGTGGGTTC 141
                      ****** ******* ******  ****** ********** ** *****   * *** * 

consensus_3994#0      CCGGTGATGATGGTGCAGCACATCATCATCG-GCGACGACGGCGGC--GACCTGTTCTCC 230
consensus_3994#1      TCGTTGATGAGTGGTCAGCACATCATCATCGTGCGACGACGGACGCACGACCTGTTCTCC 201
                       ** ******  *  **************** **********  **  ************

consensus_3994#0      GGCGGGCTCGGCGGCGGCGTGCC-CCCCGCGTC-GAAGGCGGC-GATCGCCTCGC-TGAA 286
consensus_3994#1      GGCGGGCTCGC--GCGGCGTGCCACCCCGCGTCAGAAGGCGGCAGATCGCCTCGCATGAA 259
                      **********   ********** ********* ********* *********** ****

consensus_3994#0      GGAG-GTGAAGGCCGGGGAGGACG-GCGAAGGCGGGGACTC-GCTGG-GCGACTGCGCGA 342
consensus_3994#1      GGAGCGTGAAGGCCGGGGAGGACGAGCGAAGGCGGGGACTCAGCTGGCGCGACTGCGCGA 319
                      **** ******************* **************** ***** ************

consensus_3994#0      TCTGCCTGGACGCCTTC--GCCGCC-GGGAAGGAGA-TGCCGT-GCGGGCAC---CGGTT 394
consensus_3994#1      TCTGCCTGGACGCCATTCAGCCGCCCGGGAAGGAGACTGCCGTCGCAGGGACACACGGTT 379
                      ************** *   ****** ********** ****** ** ** **   *****

consensus_3994#0      CCACAGCGAGTGC----CTAGAGC-GGTGGCTCGGCGTCCACGGGAGCTGCCCCGTCTGC 449
consensus_3994#1      CCACAGCGAGCTCGCCATCAGAACAGGTGGCTCGGCGTCCACGGGAGCTGCCCCGTCTGC 439
                      **********  *      *** * ***********************************

consensus_3994#0      CGCCGCGAGCTCCCAGCGGCGGA-ACAA-CAACCACCAGAGGAGCAGCAGAGCGGCGGCG 507
consensus_3994#1      CGCCGCGAGCTCCCCCCGGCGGATACAAACAACCACCAGAGGAGCAGCAGAACGGCGGCG 499
                      **************  ******* **** ********************** ********

consensus_3994#0      CGGAC--GCCGGCGAGAGGCGGAGGCCGAGGGCGGTGGTGGTGAGCTACGTGGTGCTCGG 565
consensus_3994#1      CGGGACAGCCGGCGAGAGGCGGAGGCCGAGGTCGGTGCTGGTGAGCTACGTGGTGCT--- 556
                      ***    ************************ ***** *******************   

consensus_3994#0      AGACGGCGGCCGCGGCGGGGAGAGAGGGGAGCCATGGAACATTAGGATAGAGGACGTGGA 625
consensus_3994#1      ------------------------------------------------------------
                                                                                  

consensus_3994#0      TTAGGACCAGGATTATATTCTTCAAATTGGTTTCAATTGGTTTTAAGGTGGTCGATTTTT 685
consensus_3994#1      ------------------------------------------------------------
                                                                                  

consensus_3994#0      CTTTCGGTTTTTGTATATACACTACTAGCTGCGAGGGGAGAAAAATCGATTGTGAATATT 745
consensus_3994#1      ------------------------------------------------------------
                                                                                  

consensus_3994#0      TTTTAAATGTGGAAAATGAAAGTA 769
consensus_3994#1      ------------------------